Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001304.1

Orthogroup ID

OG0009332

Physical Location & Seq

Genomic Coordinates Forward (+)

151578 .. 157039

Gene Structure 5462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001304.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgatgacacgactctccagaacattcccttccgtaaagctcccaaaccctcacccctcctcaattctattaccatgttcaacatcactacccaatatcaaatcagaagcaaaatcgaattctccctcaaaatcaaaaccaaaaccaaaatcgaggtcttggtctgtgtatctcatcctttccaccaatgcacccatcaagacctacgttggtgtcaccaccgatttctctcgccgtctgaaacaacacaatggtgaactaaaaggtggggcaaaggcatcccatgctggaagaccatggatttgtgcgtgcctaatacatggtttcaaggaccaaaatgaagcatgtgcatttgaatcaaaatggaaaactttatcaaggagtttgcctcgcaaaagaaaggacgataacaaggtagagcaagtaagtgatttgtcacttcctctactacaacataggcaagcagctctaaatagagttaaaggaacaccagaaggatcgagagagggagagaaccagagttggcccgagacgcaccgcgacccggctggctctccaccgtcaggtcacctccggccggcgctcatacaccatcgtcttcgtctcgctgtcgccagcagccctctgtccttagatcgtccatgcattgaacggagatggagaatcgacgacgagaagccccgaactttctccagccaccactgcaacttccggcgacggattaagctgaatttgctttccgagctcttcccggcttcattttggcttggttgcatcagtaggaggaagctggccacaattggagtagaaagccacgaacctgctgggttgcaaacgtcgaactccattaccggtcgagcagaggagatcgagcggagggagatcggatgggatgcgttctgtgatgttatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

304

Amino Acids

34.21

Weight (kDa)

10.06

Isoelectric Point (pI)

66.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43210
fragaria_vesca	FvH4_7g01930
malus_domestica	MD02G1299300.v1.1
prunus_persica	Prupe.2G025000_v2.0.a1 Prupe.2G025000_v2.0.a1
pyrus_communis	pycom02g25170
rosa_chinensis	RchiOBHm_Chr1g0318641 RchiOBHm_Chr1g0318771
rosa_laevigata	RLG00000030521
rosa_multiflora	Rmu_sc0001304.1_g000040 Rmu_sc0002545.1_g000016
rosa_roxburghii	Rroxscaffold_4G00329010
rosa_rugosa	Rorug01G0022400 Rorug01G0022400
rosa_samantha	Rh1AG035500 Rh1AG238000 Rh1BG031100 Rh1CG034400 Rh1CG222400 Rh1DG036000 Rh5DG414300
rosa_wichuraiana	Rw1G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	829
AccBSI	CCGCTC	1 cut(s)	874
AccII	CGCG	1 cut(s)	540
AciI	CCGC	2 cut(s)	538, 874
AclWI	GGATC	1 cut(s)	505
AcoI	YGGCCR	2 cut(s)	575, 792
AcsI	RAATTY	2 cut(s)	118, 730
AfiI	CCNNNNNNNGG	3 cut(s)	544, 563, 577
AgeI	ACCGGT	1 cut(s)	851
AgsI	TTSAA	4 cut(s)	81, 328, 356, 650
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	5 cut(s)	40, 467, 727, 745, 790
AluI	AGCT	5 cut(s)	40, 467, 727, 745, 790
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	2 cut(s)	524, 608
AlwI	GGATC	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	524, 575, 792
ApeKI	GCWGC	2 cut(s)	464, 618
ApoI	RAATTY	2 cut(s)	118, 730
ArsI	GACNNNNNNTTYG	4 cut(s)	140, 172, 285, 317
AsiGI	ACCGGT	1 cut(s)	851
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	2 cut(s)	331, 525
AsuC2I	CCSGG	2 cut(s)	545, 752
AsuHPI	GGTGA	4 cut(s)	44, 208, 266, 560
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	298, 590
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	2 cut(s)	476, 630
BccI	CCATC	4 cut(s)	203, 600, 651, 882
BceAI	ACGGC	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	545, 752
BcoDI	GTCTC	2 cut(s)	524, 608
BfoI	RGCGCY	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	2 cut(s)	465, 619
BlsI	GCNGC	2 cut(s)	466, 620
Bme1390I	CCNGG	2 cut(s)	545, 752
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	331, 525
BmrFI	CCNGG	2 cut(s)	545, 752
BmsI	GCATC	3 cut(s)	287, 783, 883
BpiI	GAAGAC	2 cut(s)	298, 590
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	1 cut(s)	676
BpuMI	CCSGG	2 cut(s)	545, 752
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	3 cut(s)	544, 563, 577
Bse118I	RCCGGY	2 cut(s)	577, 851
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	4 cut(s)	174, 278, 893, 898
BseLI	CCNNNNNNNGG	3 cut(s)	544, 563, 577
BseRI	GAGGAG	2 cut(s)	49, 878
BseX3I	CGGCCG	1 cut(s)	575
BseXI	GCAGC	2 cut(s)	476, 630
BseYI	CCCAGC	1 cut(s)	824
Bsh1236I	CGCG	1 cut(s)	540
Bsh1285I	CGRYCG	2 cut(s)	578, 856
BshFI	GGCC	3 cut(s)	526, 577, 794
BshTI	ACCGGT	1 cut(s)	851
BsiEI	CGRYCG	2 cut(s)	578, 856
BsiHKAI	GWGCWC	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	6 cut(s)	545, 574, 578, 712, 752, 852
BslI	CCNNNNNNNGG	3 cut(s)	544, 563, 577
BsmAI	GTCTC	2 cut(s)	524, 608
BsmBI	CGTCTC	2 cut(s)	524, 608
BsnI	GGCC	3 cut(s)	526, 577, 794
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	497, 634, 867, 882
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	2 cut(s)	538, 874
BspANI	GGCC	3 cut(s)	526, 577, 794
BspFNI	CGCG	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	1 cut(s)	752
BsrBI	CCGCTC	1 cut(s)	874
BsrFI	RCCGGY	2 cut(s)	577, 851
BssAI	RCCGGY	2 cut(s)	577, 851
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	4 cut(s)	497, 634, 867, 882
BssT1I	CCWWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	752
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	6 cut(s)	310, 462, 550, 579, 616, 792
BstDEI	CTNAG	1 cut(s)	631
BstDSI	CCRYGG	1 cut(s)	296
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	174, 278, 893, 898
BstFNI	CGCG	1 cut(s)	540
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	4 cut(s)	500, 637, 870, 885
BstMAI	GTCTC	2 cut(s)	524, 608
BstMBI	GATC	4 cut(s)	497, 634, 867, 882
BstMCI	CGRYCG	2 cut(s)	578, 856
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 532, 702, 733, 742
BstNSI	RCATGY	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	543, 750
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	476, 630
BstV2I	GAAGAC	2 cut(s)	298, 590
BstZI	CGGCCG	1 cut(s)	575
BsuRI	GGCC	3 cut(s)	526, 577, 794
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	4 cut(s)	174, 278, 893, 898
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	1 cut(s)	700
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	6 cut(s)	310, 462, 550, 579, 616, 792
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	2 cut(s)	577, 851
Cfr13I	GGNCC	2 cut(s)	331, 525
CseI	GACGC	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	851
CviAII	CATG	6 cut(s)	75, 284, 297, 320, 345, 642
DdeI	CTNAG	1 cut(s)	631
DpnI	GATC	4 cut(s)	499, 636, 869, 884
DpnII	GATC	4 cut(s)	497, 634, 867, 882
EaeI	YGGCCR	2 cut(s)	575, 792
EagI	CGGCCG	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Ecl136II	GAGCTC	1 cut(s)	745
EclXI	CGGCCG	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	331
Eco52I	CGGCCG	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	745
Eco88I	CYCGRG	1 cut(s)	527
Eco91I	GGTNACC	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	296
Esp3I	CGTCTC	2 cut(s)	524, 608
FaeI	CATG	6 cut(s)	78, 287, 300, 323, 348, 645
FaiI	YATR	8 cut(s)	76, 285, 298, 321, 346, 456, 587, 643
FatI	CATG	6 cut(s)	74, 283, 296, 319, 344, 641
Fnu4HI	GCNGC	2 cut(s)	465, 619
FokI	GGATG	4 cut(s)	161, 265, 900, 905
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	2 cut(s)	465, 619
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	2 cut(s)	465, 619
GsaI	CCCAGC	1 cut(s)	828
GsuI	CTGGAG	1 cut(s)	676
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	3 cut(s)	526, 577, 794
HapII	CCGG	6 cut(s)	545, 574, 578, 712, 752, 852
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	6 cut(s)	78, 287, 300, 323, 348, 645
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	3 cut(s)	12, 356, 663
HpaII	CCGG	6 cut(s)	545, 574, 578, 712, 752, 852
HphI	GGTGA	4 cut(s)	44, 208, 266, 560
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	4 cut(s)	106, 240, 742, 887
Hpy188III	TCNNGA	3 cut(s)	18, 199, 501
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	4 cut(s)	671, 674, 720, 841
HpyAV	CCTTC	2 cut(s)	39, 488
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	2 cut(s)	207, 836
HpyCH4V	TGCA	6 cut(s)	191, 350, 645, 705, 774, 832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 532, 702, 733, 742
HpyF3I	CTNAG	1 cut(s)	631
HpySE526I	ACGT	2 cut(s)	207, 836
Hsp92II	CATG	6 cut(s)	78, 287, 300, 323, 348, 645
HspAI	GCGC	1 cut(s)	581
KroI	GCCGGC	1 cut(s)	577
KroNI	GCCGGC	1 cut(s)	579
Kzo9I	GATC	4 cut(s)	497, 634, 867, 882
LguI	GCTCTTC	1 cut(s)	752
LmnI	GCTCC	1 cut(s)	45
Lsp1109I	GCAGC	2 cut(s)	476, 630
LweI	GCATC	3 cut(s)	287, 783, 883
MaeII	ACGT	2 cut(s)	207, 836
MaeIII	GTNAC	3 cut(s)	214, 435, 566
MalI	GATC	4 cut(s)	499, 636, 869, 884
MbiI	CCGCTC	1 cut(s)	874
MboI	GATC	4 cut(s)	497, 634, 867, 882
MboII	GAAGA	3 cut(s)	303, 590, 739
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	4 cut(s)	63, 118, 730, 798
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	1 cut(s)	6
Mox20I	TGGCCA	1 cut(s)	794
Mph1103I	ATGCAT	1 cut(s)	647
MroNI	GCCGGC	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	2 cut(s)	480, 723
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	794
MspI	CCGG	6 cut(s)	545, 574, 578, 712, 752, 852
MspR9I	CCNGG	2 cut(s)	545, 752
MunI	CAATTG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	5 cut(s)	284, 532, 702, 733, 742
NaeI	GCCGGC	1 cut(s)	579
NciI	CCSGG	2 cut(s)	545, 752
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	4 cut(s)	497, 634, 867, 882
NgoMIV	GCCGGC	1 cut(s)	577
NlaIII	CATG	6 cut(s)	78, 287, 300, 323, 348, 645
NmuCI	GTSAC	3 cut(s)	214, 435, 566
NsiI	ATGCAT	1 cut(s)	647
NspI	RCATGY	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	752
PdiI	GCCGGC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	356, 663
PinAI	ACCGGT	1 cut(s)	851
PkrI	GCNGC	2 cut(s)	466, 620
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	747
PspEI	GGTNACC	1 cut(s)	566
PspFI	CCCAGC	1 cut(s)	824
PspPI	GGNCC	2 cut(s)	331, 525
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	747
SapI	GCTCTTC	1 cut(s)	752
SaqAI	TTAA	2 cut(s)	480, 723
SatI	GCNGC	2 cut(s)	465, 619
Sau3AI	GATC	4 cut(s)	497, 634, 867, 882
Sau96I	GGNCC	2 cut(s)	331, 525
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	2 cut(s)	545, 752
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	3 cut(s)	287, 783, 883
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	4 cut(s)	63, 118, 730, 798
SsiI	CCGC	2 cut(s)	538, 874
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	543, 750
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	2 cut(s)	210, 839
TaqI	TCGA	7 cut(s)	116, 152, 500, 666, 839, 856, 870
TasI	AATT	4 cut(s)	63, 118, 730, 798
TfiI	GAWTC	2 cut(s)	356, 663
Tru1I	TTAA	2 cut(s)	480, 723
Tru9I	TTAA	2 cut(s)	480, 723
TscAI	CASTG	1 cut(s)	707
TseFI	GTSAC	3 cut(s)	214, 435, 566
TseI	GCWGC	2 cut(s)	464, 618
Tsp45I	GTSAC	3 cut(s)	214, 435, 566
TspDTI	ATGAA	2 cut(s)	354, 747
TspGWI	ACGGA	3 cut(s)	22, 667, 733
TspRI	CASTG	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	2 cut(s)	118, 730
XceI	RCATGY	1 cut(s)	348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.