Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Forward (+)

3656896 .. 3665779

Gene Structure 8884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1045600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGGCGATGCGCGAGCTCGTGACCGGCGGAGCAGCTTGTGCGGTTCCGGGCCAATCTTCTTCCTCCAATCCTTTCGGCGCCCTCGCCAACGCCCTCATCGGCTCCTCCTCCAAGCAGGAGGGGTTGAAGGAGATACCTTCGTCGACGCCCACTGCTTCCGAGCCGCAGTTTTATCCCGACGGCCATGGACACCTGCAACAGCTCCCCGGCTCCGAGCTCGACCAGCCGTTTATGCAGCCCCGCACTCAGAGCTCGGAGTTTCTTCGAAACTTCAACTCGGTTGATGGCAACAGACTGCTTGACAATGCGTGGGACGAGATACAGAGTTCTCGGCCCGAGCCTATGCATATGCCTCAACACGACCGCATTTATGATATGAGACCTCAGCTTCAACCGACTTTGGATGGGCCACCACAAAGGGTGTTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGTCGTGGTGGAATGCCTTTTCGTCCCACTCCACTTCCAGTGTTAGGATTGTCTGCTGGTGACAAACAATGTATACGTGATCGCACCAGCATCATGGCCCGGCACTTCTTTGCTGATAAAAGTGAAGATTTTATTAATGGGCAGGTCAATGCACTTTTATCTTCTTTAGATATTGACAGTGATGTCAACAGTAAAGGACCTCTGCCTGCAAGGTTTCGGGAACTGGACGATTATTGGAATGAATCCCAAGCTATAACAAAACCTGGTGCTCACGCTGCGCAAGGATGGGTCACTGAATTTAGCCAACATAGGTTAGATCATGGTGATCCCAATACGTGGGCTCACTCATTTGAGCGACAACATGGTGCCAATGGTTGGGCTTCTGAATTTGAGCAGGAACAGTCCCAGTTGATGTCTGCAGATCATATGAGAGGTGTAAATATGGCAAACTTAGCTGCAATGGAGCAAACTCGTATACTTGCAAATACGCTAGCTCAGAATGAAGAACCAAAGTTTCAGAAGTCAAGGTTTCTCCAGTTTGTGTCAAAAATGAGTCGTGGTGAACTCATTATCGATGATAATCAAGTCAAGCCGGCAACATCATCTGGGGACTGGGCATCGGAATATCAACGGCAGTATAATGCGGGTCCTAGTTGGGCTGACGAATATGCACGTGGTGAGCTATCTCATGGACCCAATCAATGGGCAAATGAGTTTAATTCTGAACAAGAGCAGCATGGGTCAGTTGATGATCAGTGGGTCAATCAGTTTTCTAAGTTGCATGTCGATGACTGGGCTGAGGATTTTGGAAATCAGGTTGGTGAAGGACTCTTGGGGGACAGTTCTGCTGATAGCTGGGCTAATGCATACAATGAGTACATGAATGAGCAAGTAGCTACGAAACAGCGTAATGATGCTGCAAGGGGAGTTTATGTATTTTCCGATATGAATCCTTACGTTGGTCACCCAAACCCACTAAAAGTAGGCCAGGAAATGTTCCACAAGGGTCTTTTGAGTGAAGCAGTGCTGGCATTAGAAGCCGAAGTTCTCAAAAACCCCGACAATGCTGAAGGTTGGAGGCTACTTGGAATAGCGCATGCAGAAAATGATGATGATCAACAGGCTATAGCAGGTATGATGCGTGCACAGGAGGCTGATCCAACAAATCTCGAAGTGCTTCTTGCTCTTGGAGTGAGTCATACAAATGAAATGGAGCAGGCGTCTGCTTTGAAATATTTACATGGATGGTTACGCCATCACCAAAAGTATGGGGTACTTACCAACCCAGAGCTGTCTGATTCCTTGTATTATGCTGATGTTGCTAGATTATTCAATGAAGCTGCTCAGATGTCACCTGATGATGCTGATGTGCACATAGTACTTGGTGTCCTTTACAATTTGTCAAGAGAATATGACAAAGCTATCAATTCCTTCCGGACAGCTTTGAAACTAAAGCCACAAGATTACTCTCTGTGGAACAAGCTTGGAGCAACACAAGCCAACAGTGTTCAGAGTGCTGATGCGATATTCGCGTATCAACAGGCATTAGATTTGAAGCCAAATTATGTTCGTGCATGGGCAAATATGGGTATCAGTTATGCCAACCAGGGCATGTATGAGGATTCCATACGTTACTATGTCCGAGCACTGACCATGAATCCAAAGGCAGACAACGGTTGGCAATATTTGAGAATTTCGTTGAGCTGTGCTTCTAGGAACGACATGTTGGAAGCATGCGATTCTCGGAATCTAGATGTTCTCCAGAAAGAGTTTCCGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

746

Amino Acids

83.35

Weight (kDa)

4.95

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CcmH_CycH	PF23914	491 - 567	1e-06	Cytochrome c-type biogenesis protein H TPR domain
TPR_CcmH_CycH	PF23914	601 - 710	2.9e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_11	PF13414	659 - 689	3.1e-06	TPR repeat
TPR_1	PF00515	676 - 707	7.9e-08	Tetratricopeptide repeat
TPR_2	PF07719	676 - 707	6.9e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	201
AasI	GACNNNNNNGTC	1 cut(s)	638
Acc16I	TGCGCA	1 cut(s)	735
Acc36I	ACCTGC	3 cut(s)	201, 589, 1577
AccB1I	GGYRCC	2 cut(s)	77, 821
AccB7I	CCANNNNNTGG	3 cut(s)	792, 831, 1158
AccI	GTMKAC	3 cut(s)	143, 529, 931
AccII	CGCG	2 cut(s)	12, 1988
AccIII	TCCGGA	1 cut(s)	1890
AciI	CCGC	6 cut(s)	27, 41, 164, 241, 364, 1100
AclWI	GGATC	2 cut(s)	776, 1607
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	752, 842, 2148
AcuI	CTGAAG	1 cut(s)	1545
AcvI	CACGTG	1 cut(s)	1130
AcyI	GRCGYC	3 cut(s)	78, 146, 1676
AdeI	CACNNNGTG	1 cut(s)	1133
AfaI	GTAC	3 cut(s)	1334, 1731, 1836
AfiI	CCNNNNNNNGG	5 cut(s)	500, 792, 831, 1158, 1415
AflIII	ACRYGT	1 cut(s)	2178
AgsI	TTSAA	8 cut(s)	127, 274, 392, 452, 1687, 1789, 1903, 2011
AjnI	CCWGG	3 cut(s)	718, 1443, 2061
AjuI	GAANNNNNNNTTGG	2 cut(s)	2165, 2197
Alw21I	GWGCWC	7 cut(s)	18, 219, 254, 727, 1603, 1830, 2104
Alw26I	GTCTC	1 cut(s)	373
Alw44I	GTGCAC	2 cut(s)	1599, 1826
AlwI	GGATC	2 cut(s)	776, 1607
Ama87I	CYCGRG	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	1890
AoxI	GGCC	6 cut(s)	49, 181, 332, 407, 552, 1441
ApaLI	GTGCAC	2 cut(s)	1599, 1826
ApeKI	GCWGC	7 cut(s)	32, 235, 731, 911, 1189, 1373, 1796
ApoI	RAATTY	3 cut(s)	752, 842, 2148
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	1632
AspLEI	GCGC	4 cut(s)	12, 80, 736, 1552
AspS9I	GGNCC	7 cut(s)	49, 333, 407, 553, 653, 1103, 1148
AsuC2I	CCSGG	3 cut(s)	48, 207, 556
AsuHPI	GGTGA	8 cut(s)	527, 791, 1028, 1145, 1289, 1412, 1706, 1800
AsuII	TTCGAA	1 cut(s)	265
AsuNHI	GCTAGC	1 cut(s)	946
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	3 cut(s)	653, 1103, 1148
BaeGI	GKGCMC	2 cut(s)	1603, 1830
BaeI	ACNNNNGTAYC	2 cut(s)	125, 158
BanI	GGYRCC	2 cut(s)	77, 821
BanII	GRGCYC	4 cut(s)	18, 219, 254, 799
BauI	CACGAG	1 cut(s)	17
BbrPI	CACGTG	1 cut(s)	1130
Bbv12I	GWGCWC	7 cut(s)	18, 219, 254, 727, 1603, 1830, 2104
BbvCI	CCTCAGC	2 cut(s)	384, 1254
BbvI	GCAGC	7 cut(s)	44, 247, 718, 898, 1201, 1360, 1783
BccI	CCATC	5 cut(s)	278, 398, 735, 1695, 1719
BceAI	ACGGC	3 cut(s)	196, 211, 1103
BciT130I	CCWGG	3 cut(s)	720, 1445, 2063
BclI	TGATCA	2 cut(s)	1207, 1570
BcnI	CCSGG	3 cut(s)	48, 207, 556
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	5 cut(s)	947, 1107, 1779, 2169, 2207
BfmI	CTRYAG	2 cut(s)	873, 1581
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	3 cut(s)	201, 589, 1577
BisI	GCNGC	8 cut(s)	33, 164, 236, 732, 912, 1190, 1374, 1797
BlsI	GCNGC	8 cut(s)	34, 165, 237, 733, 913, 1191, 1375, 1798
BmcAI	AGTACT	1 cut(s)	1836
Bme1390I	CCNGG	6 cut(s)	48, 207, 556, 720, 1445, 2063
Bme18I	GGWCC	3 cut(s)	653, 1103, 1148
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	7 cut(s)	49, 333, 407, 553, 653, 1103, 1148
BmiI	GGNNCC	7 cut(s)	45, 79, 103, 211, 823, 1104, 1150
BmrFI	CCNGG	6 cut(s)	48, 207, 556, 720, 1445, 2063
BmrI	ACTGGG	3 cut(s)	856, 1078, 1258
BmsI	GCATC	6 cut(s)	555, 1082, 1360, 1584, 1807, 1966
BmtI	GCTAGC	1 cut(s)	950
BmuI	ACTGGG	3 cut(s)	856, 1078, 1258
BpmI	CTGGAG	2 cut(s)	974, 2201
Bpu10I	CCTNAGC	2 cut(s)	384, 1254
Bpu14I	TTCGAA	1 cut(s)	265
BpuMI	CCSGG	3 cut(s)	48, 207, 556
Bsa29I	ATCGAT	1 cut(s)	1029
BsaAI	YACGTR	3 cut(s)	533, 792, 1130
BsaBI	GATNNNNATC	3 cut(s)	1035, 1404, 1569
BsaHI	GRCGYC	3 cut(s)	78, 146, 1676
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	184, 205, 2062
BsaWI	WCCGGW	1 cut(s)	1890
BsaXI	ACNNNNNCTCC	4 cut(s)	1374, 1404, 1661, 1691
Bsc4I	CCNNNNNNNGG	5 cut(s)	500, 792, 831, 1158, 1415
Bse118I	RCCGGY	2 cut(s)	23, 1048
Bse1I	ACTGG	6 cut(s)	494, 684, 862, 991, 1073, 1253
Bse3DI	GCAATG	1 cut(s)	921
Bse8I	GATNNNNATC	3 cut(s)	1035, 1404, 1569
BseAI	TCCGGA	1 cut(s)	1890
BseBI	CCWGG	3 cut(s)	720, 1445, 2063
BseCI	ATCGAT	1 cut(s)	1029
BseDI	CCNNGG	3 cut(s)	184, 205, 2062
BseGI	GGATG	3 cut(s)	409, 746, 1706
BseJI	GATNNNNATC	3 cut(s)	1035, 1404, 1569
BseLI	CCNNNNNNNGG	5 cut(s)	500, 792, 831, 1158, 1415
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	5 cut(s)	260, 398, 965, 1245, 1814
BseNI	ACTGG	6 cut(s)	494, 684, 862, 991, 1073, 1253
BseRI	GAGGAG	2 cut(s)	94, 97
BseSI	GKGCMC	2 cut(s)	1603, 1830
BseXI	GCAGC	7 cut(s)	44, 247, 718, 898, 1201, 1360, 1783
BseYI	CCCAGC	1 cut(s)	1311
Bsh1236I	CGCG	2 cut(s)	12, 1988
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	6 cut(s)	51, 183, 334, 409, 554, 1443
BshNI	GGYRCC	2 cut(s)	77, 821
BshVI	ATCGAT	1 cut(s)	1029
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	7 cut(s)	18, 219, 254, 727, 1603, 1830, 2104
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	6 cut(s)	24, 47, 207, 556, 1049, 1891
BslFI	GGGAC	5 cut(s)	326, 465, 844, 1079, 1307
BslI	CCNNNNNNNGG	5 cut(s)	500, 792, 831, 1158, 1415
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	5 cut(s)	326, 465, 844, 1079, 1307
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	6 cut(s)	51, 183, 334, 409, 554, 1443
Bso31I	GGTCTC	1 cut(s)	373
BsoBI	CYCGRG	1 cut(s)	335
Bsp119I	TTCGAA	1 cut(s)	265
Bsp1286I	GDGCHC	8 cut(s)	18, 219, 254, 727, 799, 1603, 1830, 2104
Bsp13I	TCCGGA	1 cut(s)	1890
Bsp143I	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	6 cut(s)	27, 41, 164, 241, 364, 1100
BspANI	GGCC	6 cut(s)	51, 183, 334, 409, 554, 1443
BspCNI	CTCAG	5 cut(s)	259, 397, 964, 1246, 1813
BspDI	ATCGAT	1 cut(s)	1029
BspEI	TCCGGA	1 cut(s)	1890
BspFNI	CGCG	2 cut(s)	12, 1988
BspLI	GGNNCC	7 cut(s)	45, 79, 103, 211, 823, 1104, 1150
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	3 cut(s)	201, 589, 1577
BspOI	GCTAGC	1 cut(s)	950
BspPI	GGATC	2 cut(s)	776, 1607
BspT104I	TTCGAA	1 cut(s)	265
BspT107I	GGYRCC	2 cut(s)	77, 821
BspTNI	GGTCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	921
BsrFI	RCCGGY	2 cut(s)	23, 1048
BsrI	ACTGG	6 cut(s)	494, 684, 862, 991, 1073, 1253
BssAI	RCCGGY	2 cut(s)	23, 1048
BssECI	CCNNGG	3 cut(s)	184, 205, 2062
BssMI	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
BssNAI	GTATAC	2 cut(s)	530, 932
BssNI	GRCGYC	3 cut(s)	78, 146, 1676
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	184
Bst1107I	GTATAC	2 cut(s)	530, 932
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	720, 1445, 2063
Bst4CI	ACNGT	6 cut(s)	635, 647, 858, 1298, 1961, 2132
BstACI	GRCGYC	3 cut(s)	78, 146, 1676
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstBAI	YACGTR	3 cut(s)	533, 792, 1130
BstBI	TTCGAA	1 cut(s)	265
BstC8I	GCNNGC	9 cut(s)	14, 663, 948, 1050, 1485, 1554, 1599, 1674, 2191
BstDEI	CTNAG	7 cut(s)	246, 384, 907, 951, 1230, 1254, 1800
BstDSI	CCRYGG	1 cut(s)	184
BstEII	GGTNACC	1 cut(s)	1418
BstF5I	GGATG	3 cut(s)	409, 746, 1706
BstFNI	CGCG	2 cut(s)	12, 1988
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	4 cut(s)	12, 80, 736, 1552
BstKTI	GATC	7 cut(s)	538, 775, 784, 880, 1210, 1573, 1615
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
BstMCI	CGRYCG	1 cut(s)	364
BstNI	CCWGG	3 cut(s)	720, 1445, 2063
BstNSI	RCATGY	5 cut(s)	1241, 1556, 2071, 2182, 2193
BstPI	GGTNACC	1 cut(s)	1418
BstSCI	CCNGG	6 cut(s)	46, 205, 554, 718, 1443, 2061
BstSFI	CTRYAG	2 cut(s)	873, 1581
BstSLI	GKGCMC	2 cut(s)	1603, 1830
BstUI	CGCG	2 cut(s)	12, 1988
BstV1I	GCAGC	7 cut(s)	44, 247, 718, 898, 1201, 1360, 1783
BstXI	CCANNNNNNTGG	2 cut(s)	550, 1724
BstZ17I	GTATAC	2 cut(s)	530, 932
Bsu15I	ATCGAT	1 cut(s)	1029
BsuRI	GGCC	6 cut(s)	51, 183, 334, 409, 554, 1443
BsuTUI	ATCGAT	1 cut(s)	1029
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	409, 746, 1706
BtsI	GCAGTG	2 cut(s)	150, 1485
BtsIMutI	CAGTG	8 cut(s)	150, 501, 640, 747, 1217, 1485, 1966, 2102
BveI	ACCTGC	3 cut(s)	201, 589, 1577
Cac8I	GCNNGC	9 cut(s)	14, 663, 948, 1050, 1485, 1554, 1599, 1674, 2191
CfoI	GCGC	4 cut(s)	12, 80, 736, 1552
Cfr10I	RCCGGY	2 cut(s)	23, 1048
Cfr13I	GGNCC	7 cut(s)	49, 333, 407, 553, 653, 1103, 1148
ClaI	ATCGAT	1 cut(s)	1029
CseI	GACGC	2 cut(s)	154, 1665
CsiI	ACCWGGT	1 cut(s)	718
Csp6I	GTAC	3 cut(s)	1333, 1730, 1835
CviQI	GTAC	3 cut(s)	1333, 1730, 1835
DdeI	CTNAG	7 cut(s)	246, 384, 907, 951, 1230, 1254, 1800
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	7 cut(s)	537, 774, 783, 879, 1209, 1572, 1614
DpnII	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
DraIII	CACNNNGTG	1 cut(s)	1133
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
EaeI	YGGCCR	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	3 cut(s)	16, 217, 252
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	4 cut(s)	18, 219, 254, 799
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	3 cut(s)	653, 1103, 1148
Eco53kI	GAGCTC	3 cut(s)	16, 217, 252
Eco57I	CTGAAG	1 cut(s)	1545
Eco72I	CACGTG	1 cut(s)	1130
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	1 cut(s)	1418
EcoICRI	GAGCTC	3 cut(s)	16, 217, 252
EcoO109I	RGGNCCY	2 cut(s)	653, 1103
EcoO65I	GGTNACC	1 cut(s)	1418
EcoRII	CCWGG	3 cut(s)	718, 1443, 2061
EcoT14I	CCWWGG	1 cut(s)	184
EcoT22I	ATGCAT	2 cut(s)	348, 1324
EcoT38I	GRGCYC	4 cut(s)	18, 219, 254, 799
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	184
FalI	AAGNNNNNCTT	2 cut(s)	1620, 1652
FaqI	GGGAC	5 cut(s)	326, 465, 844, 1079, 1307
FauI	CCCGC	2 cut(s)	248, 1093
FauNDI	CATATG	2 cut(s)	348, 882
FbaI	TGATCA	2 cut(s)	1207, 1570
FblI	GTMKAC	3 cut(s)	143, 529, 931
Fnu4HI	GCNGC	8 cut(s)	33, 164, 236, 732, 912, 1190, 1374, 1797
FokI	GGATG	3 cut(s)	416, 753, 1713
FriOI	GRGCYC	4 cut(s)	18, 219, 254, 799
Fsp4HI	GCNGC	8 cut(s)	33, 164, 236, 732, 912, 1190, 1374, 1797
FspBI	CTAG	5 cut(s)	947, 1107, 1779, 2169, 2207
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	4 cut(s)	11, 79, 735, 1551
GluI	GCNGC	8 cut(s)	33, 164, 236, 732, 912, 1190, 1374, 1797
GsaI	CCCAGC	1 cut(s)	1315
GsuI	CTGGAG	2 cut(s)	974, 2201
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	6 cut(s)	51, 183, 334, 409, 554, 1443
HapII	CCGG	6 cut(s)	24, 47, 207, 556, 1049, 1891
HgaI	GACGC	2 cut(s)	154, 1665
HhaI	GCGC	4 cut(s)	12, 80, 736, 1552
Hin1I	GRCGYC	3 cut(s)	78, 146, 1676
Hin6I	GCGC	4 cut(s)	10, 78, 734, 1550
HinP1I	GCGC	4 cut(s)	10, 78, 734, 1550
HincII	GTYRAC	2 cut(s)	144, 643
HindII	GTYRAC	2 cut(s)	144, 643
HindIII	AAGCTT	2 cut(s)	430, 1937
HpaII	CCGG	6 cut(s)	24, 47, 207, 556, 1049, 1891
HphI	GGTGA	8 cut(s)	527, 791, 1028, 1145, 1289, 1412, 1706, 1800
Hpy166II	GTNNAC	7 cut(s)	144, 530, 643, 932, 1019, 1601, 1828
Hpy188III	TCNNGA	8 cut(s)	19, 176, 674, 1625, 1860, 1891, 2207, 2218
Hpy8I	GTNNAC	7 cut(s)	144, 530, 643, 932, 1019, 1601, 1828
Hpy99I	CGWCG	3 cut(s)	145, 148, 182
HpyAV	CCTTC	5 cut(s)	121, 147, 1274, 1520, 1897
HpyCH4III	ACNGT	6 cut(s)	635, 647, 858, 1298, 1961, 2132
HpyCH4IV	ACGT	5 cut(s)	532, 791, 1129, 1413, 2086
HpyF3I	CTNAG	7 cut(s)	246, 384, 907, 951, 1230, 1254, 1800
HpySE526I	ACGT	5 cut(s)	532, 791, 1129, 1413, 2086
Hsp92I	GRCGYC	3 cut(s)	78, 146, 1676
HspAI	GCGC	4 cut(s)	10, 78, 734, 1550
KasI	GGCGCC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	1890
KroI	GCCGGC	1 cut(s)	1048
KroNI	GCCGGC	1 cut(s)	1050
Ksp22I	TGATCA	2 cut(s)	1207, 1570
Kzo9I	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
LmnI	GCTCC	7 cut(s)	29, 107, 207, 215, 919, 1669, 1943
Lsp1109I	GCAGC	7 cut(s)	44, 247, 718, 898, 1201, 1360, 1783
LweI	GCATC	6 cut(s)	555, 1082, 1360, 1584, 1807, 1966
MabI	ACCWGGT	1 cut(s)	718
MaeI	CTAG	5 cut(s)	947, 1107, 1779, 2169, 2207
MaeII	ACGT	5 cut(s)	532, 791, 1129, 1413, 2086
MaeIII	GTNAC	7 cut(s)	19, 515, 745, 1418, 1704, 1806, 2087
MalI	GATC	7 cut(s)	537, 774, 783, 879, 1209, 1572, 1614
MboI	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
MboII	GAAGA	6 cut(s)	48, 51, 254, 593, 609, 971
MhlI	GDGCHC	8 cut(s)	18, 219, 254, 727, 799, 1603, 1830, 2104
MluCI	AATT	7 cut(s)	752, 842, 1174, 1852, 1882, 2017, 2148
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	3 cut(s)	1018, 1278, 1660
MmeI	TCCRAC	3 cut(s)	1511, 1640, 2163
Mph1103I	ATGCAT	2 cut(s)	348, 1324
MroI	TCCGGA	1 cut(s)	1890
MroNI	GCCGGC	1 cut(s)	1048
MroXI	GAANNNNTTC	1 cut(s)	1632
MseI	TTAA	2 cut(s)	591, 1173
MslI	CAYNNNNRTG	2 cut(s)	1242, 1659
MspI	CCGG	6 cut(s)	24, 47, 207, 556, 1049, 1891
MspR9I	CCNGG	6 cut(s)	48, 207, 556, 720, 1445, 2063
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	3 cut(s)	720, 1445, 2063
MvnI	CGCG	2 cut(s)	12, 1988
NaeI	GCCGGC	1 cut(s)	1050
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	3 cut(s)	48, 207, 556
NcoI	CCATGG	1 cut(s)	184
NdeI	CATATG	2 cut(s)	348, 882
NdeII	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
NgoMIV	GCCGGC	1 cut(s)	1048
NheI	GCTAGC	1 cut(s)	946
NlaIV	GGNNCC	7 cut(s)	45, 79, 103, 211, 823, 1104, 1150
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	5 cut(s)	19, 515, 745, 1418, 1806
NsbI	TGCGCA	1 cut(s)	735
NsiI	ATGCAT	2 cut(s)	348, 1324
NspI	RCATGY	5 cut(s)	1241, 1556, 2071, 2182, 2193
NspV	TTCGAA	1 cut(s)	265
PaeI	GCATGC	2 cut(s)	1556, 2193
PaqCI	CACCTGC	1 cut(s)	201
PciI	ACATGT	1 cut(s)	2178
PctI	GAATGC	1 cut(s)	474
PdiI	GCCGGC	1 cut(s)	1050
PdmI	GAANNNNTTC	1 cut(s)	1632
PfeI	GAWTC	7 cut(s)	698, 1405, 1754, 2078, 2113, 2195, 2203
PflMI	CCANNNNNTGG	3 cut(s)	792, 831, 1158
PkrI	GCNGC	8 cut(s)	34, 165, 237, 733, 913, 1191, 1375, 1798
PleI	GAGTC	3 cut(s)	1017, 1278, 1659
PluTI	GGCGCC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	1130
PmlI	CACGTG	1 cut(s)	1130
PpsI	GAGTC	3 cut(s)	1017, 1278, 1659
Ppu21I	YACGTR	3 cut(s)	533, 792, 1130
PpuMI	RGGWCCY	2 cut(s)	653, 1103
PscI	ACATGT	1 cut(s)	2178
PshBI	ATTAAT	1 cut(s)	591
Psp124BI	GAGCTC	3 cut(s)	18, 219, 254
Psp5II	RGGWCCY	2 cut(s)	653, 1103
Psp6I	CCWGG	3 cut(s)	718, 1443, 2061
PspCI	CACGTG	1 cut(s)	1130
PspEI	GGTNACC	1 cut(s)	1418
PspFI	CCCAGC	1 cut(s)	1311
PspGI	CCWGG	3 cut(s)	718, 1443, 2061
PspN4I	GGNNCC	7 cut(s)	45, 79, 103, 211, 823, 1104, 1150
PspPI	GGNCC	7 cut(s)	49, 333, 407, 553, 653, 1103, 1148
PspPPI	RGGWCCY	2 cut(s)	653, 1103
PstI	CTGCAG	1 cut(s)	877
RsaI	GTAC	3 cut(s)	1334, 1731, 1836
RsaNI	GTAC	3 cut(s)	1333, 1730, 1835
RseI	CAYNNNNRTG	2 cut(s)	1242, 1659
SacI	GAGCTC	3 cut(s)	18, 219, 254
SalI	GTCGAC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	591, 1173
SatI	GCNGC	8 cut(s)	33, 164, 236, 732, 912, 1190, 1374, 1797
Sau3AI	GATC	7 cut(s)	535, 772, 781, 877, 1207, 1570, 1612
Sau96I	GGNCC	7 cut(s)	49, 333, 407, 553, 653, 1103, 1148
ScaI	AGTACT	1 cut(s)	1836
SchI	GAGTC	3 cut(s)	1018, 1278, 1660
ScrFI	CCNGG	6 cut(s)	48, 207, 556, 720, 1445, 2063
SduI	GDGCHC	8 cut(s)	18, 219, 254, 727, 799, 1603, 1830, 2104
SexAI	ACCWGGT	1 cut(s)	718
SfaNI	GCATC	6 cut(s)	555, 1082, 1360, 1584, 1807, 1966
SfcI	CTRYAG	2 cut(s)	873, 1581
SfoI	GGCGCC	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	265
SgrDI	CGTCGACG	1 cut(s)	142
SinI	GGWCC	3 cut(s)	653, 1103, 1148
SmiMI	CAYNNNNRTG	2 cut(s)	1242, 1659
SphI	GCATGC	2 cut(s)	1556, 2193
Sse9I	AATT	7 cut(s)	752, 842, 1174, 1852, 1882, 2017, 2148
SsiI	CCGC	6 cut(s)	27, 41, 164, 241, 364, 1100
SspDI	GGCGCC	1 cut(s)	77
SspI	AATATT	2 cut(s)	1691, 2141
SspMI	CTAG	5 cut(s)	947, 1107, 1779, 2169, 2207
SstI	GAGCTC	3 cut(s)	18, 219, 254
StyD4I	CCNGG	6 cut(s)	46, 205, 554, 718, 1443, 2061
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	6 cut(s)	635, 647, 858, 1298, 1961, 2132
TaiI	ACGT	5 cut(s)	535, 794, 1132, 1416, 2089
TaqI	TCGA	6 cut(s)	143, 219, 265, 1029, 1242, 1626
TasI	AATT	7 cut(s)	752, 842, 1174, 1852, 1882, 2017, 2148
TatI	WGTACW	2 cut(s)	1332, 1834
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	7 cut(s)	698, 1405, 1754, 2078, 2113, 2195, 2203
Tru1I	TTAA	2 cut(s)	591, 1173
Tru9I	TTAA	2 cut(s)	591, 1173
TscAI	CASTG	8 cut(s)	157, 501, 640, 754, 1217, 1485, 1966, 2109
TseFI	GTSAC	5 cut(s)	19, 515, 745, 1418, 1806
TseI	GCWGC	7 cut(s)	32, 235, 731, 911, 1189, 1373, 1796
Tsp45I	GTSAC	5 cut(s)	19, 515, 745, 1418, 1806
TspDTI	ATGAA	7 cut(s)	711, 972, 1352, 1418, 1677, 1806, 2126
TspGWI	ACGGA	1 cut(s)	2220
TspRI	CASTG	8 cut(s)	157, 501, 640, 754, 1217, 1485, 1966, 2109
Van91I	CCANNNNNTGG	3 cut(s)	792, 831, 1158
VneI	GTGCAC	2 cut(s)	1599, 1826
VpaK11BI	GGWCC	3 cut(s)	653, 1103, 1148
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	3 cut(s)	752, 842, 2148
XbaI	TCTAGA	1 cut(s)	2206
XceI	RCATGY	5 cut(s)	1241, 1556, 2071, 2182, 2193
XmiI	GTMKAC	3 cut(s)	143, 529, 931
XmnI	GAANNNNTTC	1 cut(s)	1632
XspI	CTAG	5 cut(s)	947, 1107, 1779, 2169, 2207
ZrmI	AGTACT	1 cut(s)	1836
Zsp2I	ATGCAT	2 cut(s)	348, 1324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.