Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Reverse (-)

80538637 .. 80545674

Gene Structure 7038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG507600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGGCGATGCGTGAGCTCGTCACCGGCGGAGCAGCCTGCGCCGTTCCGGGCTCATCTTCGTCCGCCAATCCCTTCGGCAATCTCGCCAACGCTCTTCTCAACTCCTCCGCCAAAGGCCAGGACTTGAAGGAGCTGCCTTCTTCGCTGCCCACGAGCTCCGGGGCTCAGTTTTACCCGGAGGCGCATGGCCCGCAGCTGCCGGGGTCGGAGGAGTTTGACCAGCCCTACATGCAACCCGGAACCCAGAGCTCAGACTTTCTCCGCAATTTTAACTCTGTTGGTGGCGGCAATGGACTGCTTGAAAGTGCGTGGGATGAGGTACAAGGCTCTCACCCTCCTCCTCCTATGCACGGCCCTCAGGTTTTGTATGATCGCGGCGCCGCTGCTCAGCTTCAACCCACCACTTTGGATGGGCCGCCACAGAGAGTGCTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGCCGTGGTGGGATACCTTTCCGTCCTACTCAACTTCCAGTGTTGGGATTGTCTGCTGGTGACAAGCAATGCATACGTGATCGCAGCAGCATCATGGCCCGACACTTTTTTGCAGATAAGAGCGAGGATTTTATTAATGGCCAGGTAAACGCACTTCTATGCTCACTAGATATTGACGGTGAAGTCAACAGTAAAGGGCCTCTCCCTGCAAGGTTCCGGGAACTAGAGGGTTATTGGAACGAATCCCAAGCTATCCAGAAACCTGGTGCTCATGCTACAGATGGGTGGATCACAGAATTTAGCCAACACAGAGTAGATCGTGGTGATCCTAATGTGTGGGCTCACTCATTTGAGCAACAACATGGTGCCAATGGTTGGGCATCTGAATTCGAGCAGGAACAGTCTCAGATGATGTCTGCAGATCATATGAGAGGTGGACATATGGCAAGCTTAGCTGCAATGGAGCAGACTCGTATGCTTGCTAATACATTAGCACAGAATGAGGACCCAAAATTTCAGAAGTCAAGGTTTCTCCAGTTTGTATCAAAGATGAGTCGTGGTGAACTTATTATTGATGATAATCAAGTCAAGCAAGCCACGTCATCTACTGCTGGGGATTGGGCAGGAGAATATCAACAGCAGTACAATGCGGGTTCTAATTGGGCTAATGAATATCAGCATGGGGAGGTGGAGATATCTCGTGCCAATCAATGGGCAAATGAGTTTGGTTCTGAACAAGAGCAACATGGGTCAGTTGATGATCAGTGGGTCAATCAATTCTCTAAGTTGCATGTTGATGACTGGGCAGAGGAATTTGGAAATCAGGTTGGTGAAGGAATATTGGGGGACGGTTCTGCTGATAGCTGGGCTAACGCATATGATGAGTTCCTAAATGAGCAAGTAGCTTCCAAGCAGCGATTGGATAGTTCAAGGGGCGTCTATGTCTTTTCTGATATGAACCCTTATGTTGGTCACCCAAACCCACTGAAAGAAGGCCAGGACATGTTCCATAAAGGTCTTTTGAGTGAAGCAGTGCTTGCTTTGGAAGCTGAAGTGCTCAAGAACCCTGACAACGCTGAAGGTTGGAGGCTACTTGGAATAGCACATGCAGAAAATGATGATGATCAACAGGCTATTGCAGCCATGATGCGTGCACAGGAGGCTGATCCAACTAATCTAGAAGTGCTTCTTGCCCTTGGAGTGAGCCATACTAATGAATTGGAGCAGTCGGCTGCTTTGAAATATTTATATGGATGGCTACGTAATCACCCAAAGTATGGAGTGCTTGCGCGACCAGAGTTGTCAGATTCTTTGTACTATGCTGATGTTGCAAGAACTTTCAATGAAGCTGCTCAAATGTCACCTGAGGATGCTGACGTGCATATAGTTCTTGGTGTCCTCTACAACTTGTCAAGAGAATATGACAAAGCCATTGAGTCCTTCAGGACAGCTTTAAAACTGAAGCCGCAGGATTACTCTCTTTGGAACAAGCTTGGAGCAACACAAGCAAACAGTGTTCAGAGTGCTGATGCAATATTGGCTTATCAACAGGCACTAGATTTGAAGCCCAACTATGTTCGTGCATGGGCTAATATGGGTATCAGCTATGCCAACCAGGGCATGTATGAGGATTCCATACGTTACTATGTTCGAGCACTTACCATGAATCCAAAGGCAGATAACGGTTGGCAGTACTTAAGAATTTCTTTAAGTTGTGCTTCTAGGAGTGACATGTTGGAAGCTTGTGATTCTCGGAATCTAGACATTCTCCTGAAGGAGTTTCCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

750

Amino Acids

82.94

Weight (kDa)

4.8

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CcmH_CycH	PF23914	495 - 553	1e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_CcmH_CycH	PF23914	606 - 715	2.5e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_1	PF00515	612 - 645	3.6e-06	Tetratricopeptide repeat
TPR_11	PF13414	664 - 694	9.9e-07	TPR repeat
TPR_1	PF00515	681 - 712	8e-08	Tetratricopeptide repeat
TPR_2	PF07719	681 - 712	7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2251
AasI	GACNNNNNNGTC	1 cut(s)	644
AccB1I	GGYRCC	2 cut(s)	377, 827
AccB7I	CCANNNNNTGG	3 cut(s)	837, 1173, 1739
AccII	CGCG	2 cut(s)	375, 1753
AclWI	GGATC	3 cut(s)	758, 782, 1622
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	5 cut(s)	758, 848, 974, 1274, 2163
AcuI	CTGAAG	4 cut(s)	1533, 1560, 1888, 1943
AcyI	GRCGYC	2 cut(s)	378, 1398
AfaI	GTAC	4 cut(s)	321, 1106, 1778, 2156
AfiI	CCNNNNNNNGG	6 cut(s)	350, 506, 837, 1173, 1430, 1739
AflII	CTTAAG	1 cut(s)	2158
AflIII	ACRYGT	2 cut(s)	1464, 2193
AgsI	TTSAA	8 cut(s)	127, 302, 395, 458, 1392, 1702, 1804, 2026
AjiI	CACGTC	2 cut(s)	1062, 1840
AjnI	CCWGG	5 cut(s)	117, 603, 724, 1458, 2076
Alw21I	GWGCWC	7 cut(s)	18, 158, 251, 733, 1521, 1618, 2119
Alw26I	GTCTC	1 cut(s)	870
Alw44I	GTGCAC	1 cut(s)	1614
AlwI	GGATC	3 cut(s)	758, 782, 1622
AoxI	GGCC	8 cut(s)	115, 187, 352, 413, 558, 601, 659, 1456
ApaLI	GTGCAC	1 cut(s)	1614
ApoI	RAATTY	5 cut(s)	758, 848, 974, 1274, 2163
AseI	ATTAAT	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	1647
AspLEI	GCGC	4 cut(s)	41, 184, 380, 1753
AspS9I	GGNCC	6 cut(s)	188, 353, 413, 559, 659, 967
AsuC2I	CCSGG	6 cut(s)	48, 160, 176, 201, 237, 680
AvaII	GGWCC	1 cut(s)	967
AxyI	CCTNAGG	2 cut(s)	357, 1827
BaeGI	GKGCMC	1 cut(s)	1618
BalI	TGGCCA	1 cut(s)	603
BanI	GGYRCC	2 cut(s)	377, 827
BanII	GRGCYC	6 cut(s)	18, 53, 158, 166, 251, 805
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BauI	CACGAG	2 cut(s)	151, 1161
Bbv12I	GWGCWC	7 cut(s)	18, 158, 251, 733, 1521, 1618, 2119
BccI	CCATC	3 cut(s)	404, 737, 1710
BceAI	ACGGC	3 cut(s)	26, 367, 450
BciT130I	CCWGG	5 cut(s)	119, 605, 726, 1460, 2078
BciVI	GTATCC	1 cut(s)	468
BclI	TGATCA	2 cut(s)	1222, 1585
BcnI	CCSGG	6 cut(s)	48, 160, 176, 201, 237, 680
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	6 cut(s)	629, 686, 1640, 2018, 2184, 2222
BfmI	CTRYAG	2 cut(s)	738, 879
BfoI	RGCGCY	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	2158
BfuI	GTATCC	1 cut(s)	468
BlpI	GCTNAGC	2 cut(s)	387, 913
BmcAI	AGTACT	1 cut(s)	2156
Bme18I	GGWCC	1 cut(s)	967
BmgBI	CACGTC	2 cut(s)	1062, 1840
BmgT120I	GGNCC	6 cut(s)	188, 353, 413, 559, 659, 967
BmiI	GGNNCC	5 cut(s)	241, 379, 677, 829, 969
BmrI	ACTGGG	1 cut(s)	1273
BmsI	GCATC	5 cut(s)	561, 851, 1599, 1822, 1981
BmuI	ACTGGG	1 cut(s)	1273
BpmI	CTGGAG	1 cut(s)	980
Bpu1102I	GCTNAGC	2 cut(s)	387, 913
BpuEI	CTTGAG	1 cut(s)	1505
BpuMI	CCSGG	6 cut(s)	48, 160, 176, 201, 237, 680
BsaAI	YACGTR	2 cut(s)	539, 1724
BsaBI	GATNNNNATC	2 cut(s)	1041, 1584
BsaHI	GRCGYC	2 cut(s)	378, 1398
BsaJI	CCNNGG	5 cut(s)	159, 200, 466, 1657, 2077
Bsc4I	CCNNNNNNNGG	6 cut(s)	350, 506, 837, 1173, 1430, 1739
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	3 cut(s)	500, 997, 1268
Bse21I	CCTNAGG	2 cut(s)	357, 1827
Bse3DI	GCAATG	3 cut(s)	295, 536, 927
Bse8I	GATNNNNATC	2 cut(s)	1041, 1584
BseBI	CCWGG	5 cut(s)	119, 605, 726, 1460, 2078
BseDI	CCNNGG	5 cut(s)	159, 200, 466, 1657, 2077
BseGI	GGATG	4 cut(s)	319, 415, 1721, 1837
BseJI	GATNNNNATC	2 cut(s)	1041, 1584
BseLI	CCNNNNNNNGG	6 cut(s)	350, 506, 837, 1173, 1430, 1739
BseMI	GCAATG	3 cut(s)	295, 536, 927
BseMII	CTCAG	6 cut(s)	179, 264, 371, 401, 881, 1818
BseNI	ACTGG	3 cut(s)	500, 997, 1268
BseRI	GAGGAG	4 cut(s)	94, 224, 327, 330
BseSI	GKGCMC	1 cut(s)	1618
BseYI	CCCAGC	2 cut(s)	1073, 1326
Bsh1236I	CGCG	2 cut(s)	375, 1753
BshFI	GGCC	8 cut(s)	117, 189, 354, 415, 560, 603, 661, 1458
BshNI	GGYRCC	2 cut(s)	377, 827
BsiHKAI	GWGCWC	7 cut(s)	18, 158, 251, 733, 1521, 1618, 2119
BsiSI	CCGG	7 cut(s)	24, 47, 159, 176, 200, 237, 679
BslFI	GGGAC	1 cut(s)	1322
BslI	CCNNNNNNNGG	6 cut(s)	350, 506, 837, 1173, 1430, 1739
BsmAI	GTCTC	1 cut(s)	870
BsmFI	GGGAC	1 cut(s)	1322
BsnI	GGCC	8 cut(s)	117, 189, 354, 415, 560, 603, 661, 1458
Bsp143I	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
Bsp1720I	GCTNAGC	2 cut(s)	387, 913
BspANI	GGCC	8 cut(s)	117, 189, 354, 415, 560, 603, 661, 1458
BspCNI	CTCAG	6 cut(s)	178, 263, 370, 400, 880, 1819
BspFNI	CGCG	2 cut(s)	375, 1753
BspLI	GGNNCC	5 cut(s)	241, 379, 677, 829, 969
BspMAI	CTGCAG	1 cut(s)	883
BspPI	GGATC	3 cut(s)	758, 782, 1622
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	377, 827
BspTI	CTTAAG	1 cut(s)	2158
BsrDI	GCAATG	3 cut(s)	295, 536, 927
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	500, 997, 1268
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	5 cut(s)	159, 200, 466, 1657, 2077
BssMI	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
BssNI	GRCGYC	2 cut(s)	378, 1398
BssSI	CACGAG	2 cut(s)	151, 1161
BssT1I	CCWWGG	1 cut(s)	1657
Bst2BI	CACGAG	2 cut(s)	151, 1161
Bst2UI	CCWGG	5 cut(s)	119, 605, 726, 1460, 2078
Bst4CI	ACNGT	6 cut(s)	641, 653, 864, 1313, 1976, 2147
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	378, 1398
BstAFI	CTTAAG	1 cut(s)	2158
BstAPI	GCANNNNNTGC	1 cut(s)	1499
BstBAI	YACGTR	2 cut(s)	539, 1724
BstC8I	GCNNGC	8 cut(s)	37, 191, 910, 942, 1056, 1500, 1614, 1749
BstDEI	CTNAG	8 cut(s)	165, 250, 357, 387, 867, 913, 1245, 1827
BstDSI	CCRYGG	1 cut(s)	466
BstEII	GGTNACC	1 cut(s)	1433
BstF5I	GGATG	4 cut(s)	319, 415, 1721, 1837
BstFNI	CGCG	2 cut(s)	375, 1753
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	4 cut(s)	41, 184, 380, 1753
BstKTI	GATC	9 cut(s)	373, 544, 753, 781, 790, 886, 1225, 1588, 1630
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
BstNI	CCWGG	5 cut(s)	119, 605, 726, 1460, 2078
BstNSI	RCATGY	6 cut(s)	232, 1256, 1468, 1571, 2086, 2197
BstPI	GGTNACC	1 cut(s)	1433
BstSFI	CTRYAG	2 cut(s)	738, 879
BstSLI	GKGCMC	1 cut(s)	1618
BstSNI	TACGTA	1 cut(s)	1724
BstUI	CGCG	2 cut(s)	375, 1753
BstXI	CCANNNNNNTGG	2 cut(s)	406, 725
Bsu36I	CCTNAGG	2 cut(s)	357, 1827
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	8 cut(s)	117, 189, 354, 415, 560, 603, 661, 1458
BtgI	CCRYGG	1 cut(s)	466
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	2 cut(s)	1062, 1840
BtsCI	GGATG	4 cut(s)	319, 415, 1721, 1837
BtsI	GCAGTG	1 cut(s)	1500
BtsIMutI	CAGTG	5 cut(s)	507, 1232, 1445, 1500, 1981
Cac8I	GCNNGC	8 cut(s)	37, 191, 910, 942, 1056, 1500, 1614, 1749
CfoI	GCGC	4 cut(s)	41, 184, 380, 1753
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	6 cut(s)	188, 353, 413, 559, 659, 967
CseI	GACGC	1 cut(s)	1387
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	4 cut(s)	320, 1105, 1777, 2155
CviQI	GTAC	4 cut(s)	320, 1105, 1777, 2155
DdeI	CTNAG	8 cut(s)	165, 250, 357, 387, 867, 913, 1245, 1827
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	9 cut(s)	372, 543, 752, 780, 789, 885, 1224, 1587, 1629
DpnII	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
DraI	TTTAAA	1 cut(s)	1917
DrdI	GACNNNNNNGTC	1 cut(s)	644
DseDI	GACNNNNNNGTC	1 cut(s)	644
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	3 cut(s)	42, 52, 97
Ecl136II	GAGCTC	3 cut(s)	16, 156, 249
Eco105I	TACGTA	1 cut(s)	1724
Eco130I	CCWWGG	1 cut(s)	1657
Eco24I	GRGCYC	6 cut(s)	18, 53, 158, 166, 251, 805
Eco32I	GATATC	1 cut(s)	1158
Eco47I	GGWCC	1 cut(s)	967
Eco53kI	GAGCTC	3 cut(s)	16, 156, 249
Eco57I	CTGAAG	4 cut(s)	1533, 1560, 1888, 1943
Eco81I	CCTNAGG	2 cut(s)	357, 1827
Eco91I	GGTNACC	1 cut(s)	1433
EcoICRI	GAGCTC	3 cut(s)	16, 156, 249
EcoO109I	RGGNCCY	2 cut(s)	659, 967
EcoO65I	GGTNACC	1 cut(s)	1433
EcoRI	GAATTC	1 cut(s)	848
EcoRII	CCWGG	5 cut(s)	117, 603, 724, 1458, 2076
EcoRV	GATATC	1 cut(s)	1158
EcoT14I	CCWWGG	1 cut(s)	1657
EcoT22I	ATGCAT	1 cut(s)	536
EcoT38I	GRGCYC	6 cut(s)	18, 53, 158, 166, 251, 805
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	1657
FalI	AAGNNNNNCTT	8 cut(s)	1482, 1514, 1635, 1667, 2152, 2184, 2164, 2196
FaqI	GGGAC	1 cut(s)	1322
FauI	CCCGC	2 cut(s)	198, 1105
FauNDI	CATATG	3 cut(s)	888, 903, 1339
FbaI	TGATCA	2 cut(s)	1222, 1585
FokI	GGATG	4 cut(s)	326, 422, 1728, 1844
FriOI	GRGCYC	6 cut(s)	18, 53, 158, 166, 251, 805
FspBI	CTAG	6 cut(s)	629, 686, 1640, 2018, 2184, 2222
GlaI	GCGC	4 cut(s)	40, 183, 379, 1752
GsaI	CCCAGC	2 cut(s)	1077, 1330
GsuI	CTGGAG	1 cut(s)	980
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	8 cut(s)	117, 189, 354, 415, 560, 603, 661, 1458
HapII	CCGG	7 cut(s)	24, 47, 159, 176, 200, 237, 679
HgaI	GACGC	1 cut(s)	1387
HhaI	GCGC	4 cut(s)	41, 184, 380, 1753
Hin1I	GRCGYC	2 cut(s)	378, 1398
Hin6I	GCGC	4 cut(s)	39, 182, 378, 1751
HinP1I	GCGC	4 cut(s)	39, 182, 378, 1751
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	4 cut(s)	436, 910, 1952, 2202
HinfI	GANTC	9 cut(s)	704, 931, 1015, 1769, 1898, 2093, 2128, 2210, 2218
HpaII	CCGG	7 cut(s)	24, 47, 159, 176, 200, 237, 679
Hpy166II	GTNNAC	5 cut(s)	610, 649, 899, 1025, 1616
Hpy188III	TCNNGA	7 cut(s)	718, 1522, 1640, 1875, 1906, 2222, 2233
Hpy8I	GTNNAC	5 cut(s)	610, 649, 899, 1025, 1616
HpyAV	CCTTC	8 cut(s)	82, 121, 147, 1289, 1448, 1535, 1912, 2230
HpyCH4III	ACNGT	6 cut(s)	641, 653, 864, 1313, 1976, 2147
HpyCH4IV	ACGT	5 cut(s)	538, 1061, 1723, 1839, 2101
HpyF3I	CTNAG	8 cut(s)	165, 250, 357, 387, 867, 913, 1245, 1827
HpySE526I	ACGT	5 cut(s)	538, 1061, 1723, 1839, 2101
Hsp92I	GRCGYC	2 cut(s)	378, 1398
HspAI	GCGC	4 cut(s)	39, 182, 378, 1751
KasI	GGCGCC	1 cut(s)	377
Ksp22I	TGATCA	2 cut(s)	1222, 1585
Kzo9I	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	6 cut(s)	29, 130, 161, 925, 1684, 1958
LweI	GCATC	5 cut(s)	561, 851, 1599, 1822, 1981
MabI	ACCWGGT	1 cut(s)	724
MaeI	CTAG	6 cut(s)	629, 686, 1640, 2018, 2184, 2222
MaeII	ACGT	5 cut(s)	538, 1061, 1723, 1839, 2101
MaeIII	GTNAC	6 cut(s)	19, 521, 1433, 1821, 2102, 2189
MalI	GATC	9 cut(s)	372, 543, 752, 780, 789, 885, 1224, 1587, 1629
MboI	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
MboII	GAAGA	3 cut(s)	48, 86, 132
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	9 cut(s)	265, 758, 848, 974, 1120, 1238, 1274, 1679, 2163
MluNI	TGGCCA	1 cut(s)	603
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	3 cut(s)	925, 1024, 1907
MmeI	TCCRAC	4 cut(s)	186, 1526, 1655, 2178
Mox20I	TGGCCA	1 cut(s)	603
Mph1103I	ATGCAT	1 cut(s)	536
MroXI	GAANNNNTTC	1 cut(s)	1647
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	5 cut(s)	270, 597, 1916, 2159, 2171
MslI	CAYNNNNRTG	3 cut(s)	619, 1257, 1674
Msp20I	TGGCCA	1 cut(s)	603
MspA1I	CMGCKG	2 cut(s)	196, 383
MspCI	CTTAAG	1 cut(s)	2158
MspI	CCGG	7 cut(s)	24, 47, 159, 176, 200, 237, 679
MvaI	CCWGG	5 cut(s)	119, 605, 726, 1460, 2078
MvnI	CGCG	2 cut(s)	375, 1753
NarI	GGCGCC	1 cut(s)	378
NciI	CCSGG	6 cut(s)	48, 160, 176, 201, 237, 680
NdeI	CATATG	3 cut(s)	888, 903, 1339
NdeII	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
NlaIV	GGNNCC	5 cut(s)	241, 379, 677, 829, 969
NmuCI	GTSAC	5 cut(s)	19, 521, 1433, 1821, 2189
NsiI	ATGCAT	1 cut(s)	536
NspI	RCATGY	6 cut(s)	232, 1256, 1468, 1571, 2086, 2197
PciI	ACATGT	2 cut(s)	1464, 2193
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	1647
PfeI	GAWTC	6 cut(s)	704, 1769, 2093, 2128, 2210, 2218
PflMI	CCANNNNNTGG	3 cut(s)	837, 1173, 1739
PfoI	TCCNGGA	1 cut(s)	678
PleI	GAGTC	3 cut(s)	925, 1023, 1906
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	3 cut(s)	925, 1023, 1906
Ppu21I	YACGTR	2 cut(s)	539, 1724
PpuMI	RGGWCCY	1 cut(s)	967
PscI	ACATGT	2 cut(s)	1464, 2193
PshBI	ATTAAT	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	2251
Psp124BI	GAGCTC	3 cut(s)	18, 158, 251
Psp5II	RGGWCCY	1 cut(s)	967
Psp6I	CCWGG	5 cut(s)	117, 603, 724, 1458, 2076
PspEI	GGTNACC	1 cut(s)	1433
PspFI	CCCAGC	2 cut(s)	1073, 1326
PspGI	CCWGG	5 cut(s)	117, 603, 724, 1458, 2076
PspN4I	GGNNCC	5 cut(s)	241, 379, 677, 829, 969
PspPI	GGNCC	6 cut(s)	188, 353, 413, 559, 659, 967
PspPPI	RGGWCCY	1 cut(s)	967
PstI	CTGCAG	1 cut(s)	883
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	4 cut(s)	321, 1106, 1778, 2156
RsaNI	GTAC	4 cut(s)	320, 1105, 1777, 2155
RseI	CAYNNNNRTG	3 cut(s)	619, 1257, 1674
SacI	GAGCTC	3 cut(s)	18, 158, 251
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	5 cut(s)	270, 597, 1916, 2159, 2171
Sau3AI	GATC	9 cut(s)	370, 541, 750, 778, 787, 883, 1222, 1585, 1627
Sau96I	GGNCC	6 cut(s)	188, 353, 413, 559, 659, 967
ScaI	AGTACT	1 cut(s)	2156
SchI	GAGTC	3 cut(s)	925, 1024, 1907
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	5 cut(s)	561, 851, 1599, 1822, 1981
SfcI	CTRYAG	2 cut(s)	738, 879
SfoI	GGCGCC	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	967
SmiMI	CAYNNNNRTG	3 cut(s)	619, 1257, 1674
SmlI	CTYRAG	2 cut(s)	1520, 2158
SmoI	CTYRAG	2 cut(s)	1520, 2158
SnaBI	TACGTA	1 cut(s)	1724
Sse9I	AATT	9 cut(s)	265, 758, 848, 974, 1120, 1238, 1274, 1679, 2163
SspDI	GGCGCC	1 cut(s)	377
SspI	AATATT	3 cut(s)	1302, 1706, 1998
SspMI	CTAG	6 cut(s)	629, 686, 1640, 2018, 2184, 2222
SstI	GAGCTC	3 cut(s)	18, 158, 251
StyI	CCWWGG	1 cut(s)	1657
TaaI	ACNGT	6 cut(s)	641, 653, 864, 1313, 1976, 2147
TaiI	ACGT	5 cut(s)	541, 1064, 1726, 1842, 2104
TaqI	TCGA	2 cut(s)	852, 2113
TasI	AATT	9 cut(s)	265, 758, 848, 974, 1120, 1238, 1274, 1679, 2163
TatI	WGTACW	3 cut(s)	1104, 1776, 2154
TauI	GCSGC	5 cut(s)	288, 378, 383, 418, 1930
TfiI	GAWTC	6 cut(s)	704, 1769, 2093, 2128, 2210, 2218
Tru1I	TTAA	5 cut(s)	270, 597, 1916, 2159, 2171
Tru9I	TTAA	5 cut(s)	270, 597, 1916, 2159, 2171
TscAI	CASTG	5 cut(s)	507, 1232, 1452, 1500, 1981
TseFI	GTSAC	5 cut(s)	19, 521, 1433, 1821, 2189
Tsp45I	GTSAC	5 cut(s)	19, 521, 1433, 1821, 2189
TspDTI	ATGAA	5 cut(s)	1146, 1433, 1692, 1821, 2141
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	5 cut(s)	507, 1232, 1452, 1500, 1981
Van91I	CCANNNNNTGG	3 cut(s)	837, 1173, 1739
Vha464I	CTTAAG	1 cut(s)	2158
VneI	GTGCAC	1 cut(s)	1614
VpaK11BI	GGWCC	1 cut(s)	967
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	5 cut(s)	758, 848, 974, 1274, 2163
XbaI	TCTAGA	2 cut(s)	1639, 2221
XceI	RCATGY	6 cut(s)	232, 1256, 1468, 1571, 2086, 2197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1378
XmnI	GAANNNNTTC	1 cut(s)	1647
XspI	CTAG	6 cut(s)	629, 686, 1640, 2018, 2184, 2222
ZrmI	AGTACT	1 cut(s)	2156
Zsp2I	ATGCAT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.