Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Reverse (-)

59750286 .. 59753844

Gene Structure 3559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCTACTCAGCTTCCTCTATGGTCTCCCTCGTGCATCAGTTTGTGCTTCTTTGCTTGGTTGCAAAGTTTCTTCTCCGTCGTCCATGGCGATACTAATCTCTCTTACCCTTCTCTCACCCCCATTGACCGCGATCTCTACCATTCTAGTTGGATACAATTAAGGCTCAAAACAAGGGCTGAGATTTCTGTAGTTACTTATAGTCGGAGAAGGCAGGAGGCCGATGACAAGCCAAGGTTTCGGATCCTTCTTAGTTTCGGGCAGCATGGAAGGGAGCTCATTACATCTGAAGTCGCTTTGCGAATCCTTTCAATCTTGTGTATAGAAAAGTTTCTGCCCAACCTAGACCAAGCTTCCTTAGACCAGACCCTTGACAATCTTGTGATAAAGGTGGTGCCCATGGAAAACCTAAATGGCCGCAGACTTGTTGAAGCAGGAGACCTCTGCGAGAGGAGAAATGGGAGAGGAGTTGATCTTAACCGTAATTGGAGCGTAGATTGGGGCAAAAAAGAGAAGGACTATGATCCGTATGAGGAAAATCCTGGGACTGCTCCTTTCAGTGAGCCTGAAGCTCAAATAATGCGGAAAATTGCAGTGTCATTTGATCCGCACATATGGGTTAATATACACTCTGGGATGGAGGCTCTATTTATGCCGTACGACCATAAGAACACAACCCCTGATGGAGTTCCCTCACAAAAGATGAAGTCATTGCTTGAAGAACTGAACCATCTGCATTGCCAAAAACGTTGCATGATTGGGTCTGGTGGAGGTTCTGTTGGATATCTGGCACATGGGACAGCAACTGATTTTATGTTTGACATTGTAAAGGTGCCGATGGCTTTCACCTTTGAGATATATGGAGATGGAGCAGCCTCATCAAAAGATTGCTTTAAAATGTTCAATCCCACCGACTTTGGTACCTTCAATAGGGTCCTCAATGAATGGTCAGCTGCATTTTTCACAATTTTTAAATTGGGGCCAAACCTGCTCGGTGAAAATTATTCAAAGCCCCCCTTAGACAAGTGGGTGTCCATAGATGAGTATCTTGATGGGTACTTGGTCGAGAGGAGTAGTAGATATGGAAAGAAGATGGAGGTGCTTGAGCTAGGACTGCAGGAGATAAGAACATATTTCAGGCTCTTGTTGTTATCCTCAGTTCTGTTACTGTTCATGTTATGTTCCAGAATTTTAAAAAGCAAGTTTTCTAGACCAATTGTTTCTGCTATTGCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

412

Amino Acids

47.01

Weight (kDa)

6.76

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M14	PF00246	64 - 299	2.7e-26	Zinc carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	996
Acc65I	GGTACC	1 cut(s)	920
AccB1I	GGYRCC	3 cut(s)	394, 832, 920
AccII	CGCG	1 cut(s)	132
AciI	CCGC	4 cut(s)	130, 418, 583, 608
AclI	AACGTT	1 cut(s)	748
AclWI	GGATC	4 cut(s)	238, 251, 518, 599
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	1188
AcuI	CTGAAG	2 cut(s)	309, 588
AfaI	GTAC	3 cut(s)	659, 922, 1058
AfiI	CCNNNNNNNGG	1 cut(s)	930
AgsI	TTSAA	6 cut(s)	312, 431, 719, 904, 928, 1008
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	6 cut(s)	13, 277, 353, 572, 953, 1108
AluI	AGCT	6 cut(s)	13, 277, 353, 572, 953, 1108
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	30, 432
AlwI	GGATC	4 cut(s)	238, 251, 518, 599
AlwNI	CAGNNNCTG	1 cut(s)	806
AoxI	GGCC	3 cut(s)	219, 415, 980
ApeKI	GCWGC	3 cut(s)	262, 872, 953
ApoI	RAATTY	1 cut(s)	1188
Asp700I	GAANNNNTTC	2 cut(s)	307, 330
Asp718I	GGTACC	1 cut(s)	920
AspS9I	GGNCC	2 cut(s)	934, 980
AsuHPI	GGTGA	3 cut(s)	109, 838, 1007
AvaII	GGWCC	1 cut(s)	934
BaeGI	GKGCMC	1 cut(s)	399
BaeI	ACNNNNGTAYC	2 cut(s)	904, 937
BamHI	GGATCC	1 cut(s)	243
BanI	GGYRCC	3 cut(s)	394, 832, 920
BanII	GRGCYC	1 cut(s)	279
BauI	CACGAG	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	274, 884, 940
BccI	CCATC	7 cut(s)	631, 677, 738, 832, 860, 1046, 1087
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	1 cut(s)	543
BciVI	GTATCC	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	30, 432
BfaI	CTAG	4 cut(s)	147, 344, 1109, 1209
BfmI	CTRYAG	2 cut(s)	189, 1115
BfuAI	ACCTGC	1 cut(s)	996
BfuI	GTATCC	1 cut(s)	147
BisI	GCNGC	4 cut(s)	263, 418, 873, 954
BlsI	GCNGC	4 cut(s)	264, 419, 874, 955
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	934
BmgT120I	GGNCC	2 cut(s)	934, 980
BmiI	GGNNCC	6 cut(s)	245, 396, 834, 922, 935, 981
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	1124
BsaBI	GATNNNNATC	2 cut(s)	96, 1044
BsaI	GGTCTC	2 cut(s)	30, 432
BsaJI	CCNNGG	4 cut(s)	85, 233, 399, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	930
Bse3DI	GCAATG	2 cut(s)	710, 736
Bse8I	GATNNNNATC	2 cut(s)	96, 1044
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	4 cut(s)	85, 233, 399, 542
BseGI	GGATG	1 cut(s)	642
BseJI	GATNNNNATC	2 cut(s)	96, 1044
BseLI	CCNNNNNNNGG	1 cut(s)	930
BseMI	GCAATG	2 cut(s)	710, 736
BseMII	CTCAG	3 cut(s)	23, 171, 1170
BseRI	GAGGAG	3 cut(s)	466, 480, 1084
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	274, 884, 940
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	221, 417, 982
BshNI	GGYRCC	3 cut(s)	394, 832, 920
BsiHKAI	GWGCWC	1 cut(s)	279
BsiWI	CGTACG	1 cut(s)	657
BslFI	GGGAC	2 cut(s)	559, 811
BslI	CCNNNNNNNGG	1 cut(s)	930
BsmAI	GTCTC	2 cut(s)	30, 432
BsmFI	GGGAC	2 cut(s)	559, 811
BsnI	GGCC	3 cut(s)	221, 417, 982
Bso31I	GGTCTC	2 cut(s)	30, 432
Bsp1286I	GDGCHC	2 cut(s)	279, 399
Bsp143I	GATC	5 cut(s)	133, 243, 472, 523, 604
Bsp19I	CCATGG	2 cut(s)	85, 399
BspACI	CCGC	4 cut(s)	130, 418, 583, 608
BspANI	GGCC	3 cut(s)	221, 417, 982
BspCNI	CTCAG	3 cut(s)	22, 172, 1169
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	6 cut(s)	245, 396, 834, 922, 935, 981
BspMAI	CTGCAG	1 cut(s)	1119
BspMI	ACCTGC	1 cut(s)	996
BspPI	GGATC	4 cut(s)	238, 251, 518, 599
BspT107I	GGYRCC	3 cut(s)	394, 832, 920
BspTNI	GGTCTC	2 cut(s)	30, 432
BsrDI	GCAATG	2 cut(s)	710, 736
BssECI	CCNNGG	4 cut(s)	85, 233, 399, 542
BssMI	GATC	5 cut(s)	133, 243, 472, 523, 604
BssSI	CACGAG	1 cut(s)	31
BssT1I	CCWWGG	3 cut(s)	85, 233, 399
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	482, 1170
BstDEI	CTNAG	6 cut(s)	9, 180, 251, 358, 1018, 1156
BstDSI	CCRYGG	2 cut(s)	85, 399
BstENI	CCTNNNNNAGG	1 cut(s)	928
BstF5I	GGATG	1 cut(s)	642
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	5 cut(s)	136, 246, 475, 526, 607
BstMAI	GTCTC	2 cut(s)	30, 432
BstMBI	GATC	5 cut(s)	133, 243, 472, 523, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	988, 1114
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	2 cut(s)	189, 1115
BstSLI	GKGCMC	1 cut(s)	399
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	274, 884, 940
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	221, 417, 982
BtgI	CCRYGG	2 cut(s)	85, 399
BtsCI	GGATG	1 cut(s)	642
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	565, 600
BveI	ACCTGC	1 cut(s)	996
CaiI	CAGNNNCTG	1 cut(s)	806
Cfr13I	GGNCC	2 cut(s)	934, 980
Csp6I	GTAC	3 cut(s)	658, 921, 1057
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	6 cut(s)	86, 266, 400, 754, 794, 1174
CviQI	GTAC	3 cut(s)	658, 921, 1057
DdeI	CTNAG	6 cut(s)	9, 180, 251, 358, 1018, 1156
DpnI	GATC	5 cut(s)	135, 245, 474, 525, 606
DpnII	GATC	5 cut(s)	133, 243, 472, 523, 604
DraI	TTTAAA	3 cut(s)	895, 973, 1194
EaeI	YGGCCR	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	277
Eco130I	CCWWGG	3 cut(s)	85, 233, 399
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	2 cut(s)	30, 432
Eco32I	GATATC	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	934
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	2 cut(s)	309, 588
EcoICRI	GAGCTC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	934
EcoRII	CCWGG	1 cut(s)	541
EcoRV	GATATC	1 cut(s)	785
EcoT14I	CCWWGG	3 cut(s)	85, 233, 399
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	3 cut(s)	85, 233, 399
FaeI	CATG	6 cut(s)	89, 269, 403, 757, 797, 1177
FalI	AAGNNNNNCTT	2 cut(s)	1001, 1033
FaqI	GGGAC	2 cut(s)	559, 811
FatI	CATG	6 cut(s)	85, 265, 399, 753, 793, 1173
FauNDI	CATATG	1 cut(s)	614
Fnu4HI	GCNGC	4 cut(s)	263, 418, 873, 954
FokI	GGATG	1 cut(s)	649
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	4 cut(s)	263, 418, 873, 954
FspBI	CTAG	4 cut(s)	147, 344, 1109, 1209
GluI	GCNGC	4 cut(s)	263, 418, 873, 954
HaeIII	GGCC	3 cut(s)	221, 417, 982
Hin1II	CATG	6 cut(s)	89, 269, 403, 757, 797, 1177
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	1 cut(s)	303
HphI	GGTGA	3 cut(s)	109, 838, 1007
Hpy188I	TCNGA	4 cut(s)	207, 243, 289, 1238
Hpy188III	TCNNGA	4 cut(s)	1049, 1066, 1185, 1209
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	6 cut(s)	120, 204, 257, 264, 508, 934
HpyCH4III	ACNGT	2 cut(s)	482, 1170
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	8 cut(s)	36, 64, 593, 736, 753, 956, 1117, 1232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	988, 1114
HpyF3I	CTNAG	6 cut(s)	9, 180, 251, 358, 1018, 1156
HpySE526I	ACGT	1 cut(s)	748
Hsp92II	CATG	6 cut(s)	89, 269, 403, 757, 797, 1177
KpnI	GGTACC	1 cut(s)	924
Kzo9I	GATC	5 cut(s)	133, 243, 472, 523, 604
LmnI	GCTCC	4 cut(s)	274, 489, 556, 869
Lsp1109I	GCAGC	3 cut(s)	274, 884, 940
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	4 cut(s)	147, 344, 1109, 1209
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	2 cut(s)	193, 1164
MalI	GATC	5 cut(s)	135, 245, 474, 525, 606
MboI	GATC	5 cut(s)	133, 243, 472, 523, 604
MboII	GAAGA	3 cut(s)	64, 731, 1102
MfeI	CAATTG	1 cut(s)	1215
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	279, 399
MluCI	AATT	8 cut(s)	158, 484, 588, 966, 974, 1000, 1188, 1215
MmeI	TCCRAC	3 cut(s)	131, 185, 760
MroXI	GAANNNNTTC	2 cut(s)	307, 330
MseI	TTAA	6 cut(s)	161, 477, 621, 894, 972, 1193
MspA1I	CMGCKG	1 cut(s)	953
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	1 cut(s)	1215
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	988, 1114
NcoI	CCATGG	2 cut(s)	85, 399
NdeI	CATATG	1 cut(s)	614
NdeII	GATC	5 cut(s)	133, 243, 472, 523, 604
NlaIII	CATG	6 cut(s)	89, 269, 403, 757, 797, 1177
NlaIV	GGNNCC	6 cut(s)	245, 396, 834, 922, 935, 981
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	307, 330
PfeI	GAWTC	1 cut(s)	303
Pfl23II	CGTACG	1 cut(s)	657
PkrI	GCNGC	4 cut(s)	264, 419, 874, 955
PpuMI	RGGWCCY	1 cut(s)	934
Psp124BI	GAGCTC	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	748
Psp5II	RGGWCCY	1 cut(s)	934
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspLI	CGTACG	1 cut(s)	657
PspN4I	GGNNCC	6 cut(s)	245, 396, 834, 922, 935, 981
PspPI	GGNCC	2 cut(s)	934, 980
PspPPI	RGGWCCY	1 cut(s)	934
PstI	CTGCAG	1 cut(s)	1119
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	3 cut(s)	659, 922, 1058
RsaNI	GTAC	3 cut(s)	658, 921, 1057
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	6 cut(s)	161, 477, 621, 894, 972, 1193
SatI	GCNGC	4 cut(s)	263, 418, 873, 954
Sau3AI	GATC	5 cut(s)	133, 243, 472, 523, 604
Sau96I	GGNCC	2 cut(s)	934, 980
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	279, 399
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	2 cut(s)	189, 1115
SinI	GGWCC	1 cut(s)	934
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
Sse9I	AATT	8 cut(s)	158, 484, 588, 966, 974, 1000, 1188, 1215
SsiI	CCGC	4 cut(s)	130, 418, 583, 608
SspMI	CTAG	4 cut(s)	147, 344, 1109, 1209
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	3 cut(s)	85, 233, 399
TaaI	ACNGT	2 cut(s)	482, 1170
TaiI	ACGT	1 cut(s)	751
TaqI	TCGA	1 cut(s)	1065
TasI	AATT	8 cut(s)	158, 484, 588, 966, 974, 1000, 1188, 1215
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	6 cut(s)	161, 477, 621, 894, 972, 1193
Tru9I	TTAA	6 cut(s)	161, 477, 621, 894, 972, 1193
TscAI	CASTG	2 cut(s)	565, 600
TseI	GCWGC	3 cut(s)	262, 872, 953
TspDTI	ATGAA	3 cut(s)	719, 957, 1162
TspGWI	ACGGA	2 cut(s)	67, 516
TspRI	CASTG	2 cut(s)	565, 600
VpaK11BI	GGWCC	1 cut(s)	934
XagI	CCTNNNNNAGG	1 cut(s)	928
XapI	RAATTY	1 cut(s)	1188
XbaI	TCTAGA	1 cut(s)	1208
XmnI	GAANNNNTTC	2 cut(s)	307, 330
XspI	CTAG	4 cut(s)	147, 344, 1109, 1209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.