Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Forward (+)

4149162 .. 4162440

Gene Structure 13279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1047800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGGCGATGCGCGACCTCGTTACCGGCGGAGCAGCTTGTGCGGTTCCAGGCCAATCTTCTTCCTCCAATCCTTTCGGCGCCCTCGCCAACGCCCTCATCGGCTCCTCCTCCAAGCAGCAGGAGAGGTTGAAGGAGATACCTTCGTCGACGCCGACTGCTTCTGAGCCGCAGTTTTATCCCGACGGCCATGGCCACCTGCAACAGCTCCCCGGCTCCGAGTTTGACCAGCCGTTTATGCAGCCCGGCACTCAGAGCTCGGACTTTCTTCGGAACTTCAACTCCGTTGATGGCAACAGACTGCTTGACAATGCGTGGGATGAGATACAGAGTTCTCAGCCCGGGCCTATGCATATGCCTCAACACGACCCCATTTATGATATGGGAGCTTCTCCTCAGCTTCAACCGACTTTGGATGGGCCACCACAAAGGGTGTTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGTCGTGGTGGAATGCCGTTTCGTCCTGCTCCACTTCCAGTGTTAGGATTGTCTGCTGGTGACAAACAATGTATACGTGATCGCACCAGCATCATGGCACGGCACTTCTTTGCTGATAAAAGTGAAGATTTTATTAATGGGCAGGTAAATGCACTTTTATCTTCTTTAGATATTGACAGTGATGTCAATAGTAAAGGACCTCTGCCTTCAAGGTTTCGGGAACTAGACGATTATTGGAATGAATCCCAAGCTATAACAAAACCTGGTGCTCATGCTGCGCAAGGGTGGGTCACTGAATTTAGCCAACATAGGGTAGATCATGGTGATCCTAATTCATGGGCTCACTCATTTGAGCGACAACATGGTGCCAATGGCTGGGCTTCTGAATTTGAGCAGGAACAGTCCCAGTTGATGTCTGCAGATCATATGAGAGGTGTAAATATGGCAAGCTTAGCTGCAATGGAGCAAACTCGTATGCTTGCAAATACGCTAGCACAGAGTGAAGACCCAAAGTTTCAGAAGTCAAGGTTTCTCCAGTTTGTGTCAAAAATGAGTCGTGGTGAACTCATTATTGATGATAATCAAGTCAAGCCGGCCACATCATCAGGGGACTGGGCATCAGAATATCAACAGCAGTATAATGCAGGTCCTAGTTGGGCTGACGAATATACACGTGGCGAGCTATCTCATGGACCCAATCAATGGGCAAATGAGTTTACTTCTGAACGAGAGCAGCATGGGTCAGTTGATGATCAGTGGGTCAATCAGTTTTCTAAGTTGCATGTTGATGACTGGGCAGAGGAATTTGGAAATCAGGTTGGTGAAGGACTCTTGGGGGACAGTTCAGCTGATACCTGGGTTAATTCATACGATGAGTACATTAATGAGCAAGTAGCTACTAAACAGCATAGTGATGCTGCAAGGGGAGTTTACGTATTTTCCGATATGAATCCATATGTTGGTCACCCAAACCCACTAAAAGTAGGCCAGGAAATGTTCCACAAGGGTCTTCTGAGTGAAGCAGTGCTTGCATTAGAAGCTGAAGTTCTCAAGAACCCTGACAATGCTGAAGGTTGGAGGCTACTTGGAATAGCGCATGCAGAAAATGATGATGATCAACAGGCTATAGCAGGTATGATGCGTGCACAGGAGGCTGATCCGACAAATCTCGAAGTGCTTCTTGCTCTCGGAGTGAGTCATACAAATGAACTGGAGCAGGCAGCTGCTTTGAAATATTTATATGGATGGTTACGCCATCACCAAAAGTATGGGGTGCTTGCCAAACCAGAGCTGTCTGATTCCTTGTACTATGCTGATGTAGCAAGATTATTCAGTGAAGCTGCTCAGATGTCACCTGATGATGCTGATGTGCACATAGTACTTGGTGTGCTTTACAACTTGTCAAGAGAATATGACAAAGCTATCGAGTCATTCCGGACAGCTTTGAAACTAAAGCCGCAAGATTACTCACTTTGGAACAAGCTTGGAGCAACACAAGCAAACAGTGTTCAGAGTGCTGATGCGATATTGGCTTATCAACAGGCCCTAGATTTGAAGCCTAACTATGTTCGTGCATGGGCAAATATGGGCATCAGTTATGCCAACCAGGGTATGTATGAGGATTCCATACGTTACTATGTCCGAGCACTGACCATGAATCCAAAGGCAGATAACGGTTGGCAATATTTAAGAATTTCTTTGAGCTGTGCTTCTAGGAATGACATGTTAGAAGCTTGCGATTCTCGGAATCTAGATGTTCTCCAGAAAGAGTTTCCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

749

Amino Acids

83.25

Weight (kDa)

4.84

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CcmH_CycH	PF23914	494 - 551	2.1e-06	Cytochrome c-type biogenesis protein H TPR domain
TPR_19	PF14559	592 - 650	9e-06	Tetratricopeptide repeat
TPR_CcmH_CycH	PF23914	604 - 713	2e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_1	PF00515	610 - 643	3.6e-06	Tetratricopeptide repeat
TPR_11	PF13414	662 - 692	9.9e-07	TPR repeat
TPR_1	PF00515	679 - 710	8e-08	Tetratricopeptide repeat
TPR_2	PF07719	679 - 710	7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	204
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc16I	TGCGCA	1 cut(s)	744
Acc36I	ACCTGC	4 cut(s)	204, 598, 1100, 1586
AccB1I	GGYRCC	2 cut(s)	77, 830
AccB7I	CCANNNNNTGG	3 cut(s)	840, 1167, 1424
AccI	GTMKAC	2 cut(s)	146, 538
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	1899
AciI	CCGC	4 cut(s)	27, 41, 167, 1922
AclWI	GGATC	2 cut(s)	785, 1616
AcoI	YGGCCR	3 cut(s)	184, 190, 1059
AcsI	RAATTY	4 cut(s)	761, 851, 1268, 2157
AcuI	CTGAAG	2 cut(s)	1527, 1554
AcvI	CACGTG	1 cut(s)	1139
AcyI	GRCGYC	2 cut(s)	78, 149
AdeI	CACNNNGTG	1 cut(s)	965
AfaI	GTAC	3 cut(s)	1343, 1772, 1845
AfiI	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
AflIII	ACRYGT	2 cut(s)	1136, 2187
AgsI	TTSAA	8 cut(s)	130, 277, 401, 461, 675, 1696, 1912, 2020
AjnI	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2070
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
Alw21I	GWGCWC	5 cut(s)	257, 736, 1612, 1839, 2113
Alw44I	GTGCAC	2 cut(s)	1608, 1835
AlwI	GGATC	2 cut(s)	785, 1616
Ama87I	CYCGRG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	1899
AoxI	GGCC	8 cut(s)	49, 184, 190, 341, 416, 1059, 1450, 2007
ApaLI	GTGCAC	2 cut(s)	1608, 1835
ApoI	RAATTY	4 cut(s)	761, 851, 1268, 2157
AseI	ATTAAT	2 cut(s)	600, 1347
Asp700I	GAANNNNTTC	1 cut(s)	1641
AspLEI	GCGC	4 cut(s)	12, 80, 745, 1561
AspS9I	GGNCC	6 cut(s)	341, 416, 662, 1112, 1157, 2008
AsuC2I	CCSGG	4 cut(s)	210, 243, 339, 340
AsuHPI	GGTGA	7 cut(s)	536, 800, 1037, 1298, 1421, 1715, 1809
AsuNHI	GCTAGC	1 cut(s)	955
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	3 cut(s)	662, 1112, 1157
BaeGI	GKGCMC	2 cut(s)	1612, 1839
BaeI	ACNNNNGTAYC	4 cut(s)	128, 161, 1308, 1341
BalI	TGGCCA	1 cut(s)	192
BanI	GGYRCC	2 cut(s)	77, 830
BanII	GRGCYC	2 cut(s)	257, 808
BbrPI	CACGTG	1 cut(s)	1139
BbsI	GAAGAC	2 cut(s)	975, 1466
Bbv12I	GWGCWC	5 cut(s)	257, 736, 1612, 1839, 2113
BbvCI	CCTCAGC	1 cut(s)	393
BccI	CCATC	4 cut(s)	281, 407, 1704, 1728
BceAI	ACGGC	4 cut(s)	199, 214, 466, 581
BciT130I	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2072
BclI	TGATCA	2 cut(s)	1216, 1579
BcnI	CCSGG	4 cut(s)	210, 243, 339, 340
BfaI	CTAG	6 cut(s)	689, 956, 1116, 2012, 2178, 2216
BfmI	CTRYAG	2 cut(s)	882, 1590
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	4 cut(s)	204, 598, 1100, 1586
BlpI	GCTNAGC	1 cut(s)	916
BmcAI	AGTACT	1 cut(s)	1845
Bme1390I	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2072
Bme18I	GGWCC	3 cut(s)	662, 1112, 1157
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	6 cut(s)	341, 416, 662, 1112, 1157, 2008
BmiI	GGNNCC	6 cut(s)	45, 79, 103, 214, 832, 1159
BmrFI	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2072
BmrI	ACTGGG	3 cut(s)	865, 1087, 1267
BmsI	GCATC	7 cut(s)	564, 1091, 1369, 1593, 1816, 1975, 2064
BmtI	GCTAGC	1 cut(s)	959
BmuI	ACTGGG	3 cut(s)	865, 1087, 1267
BpiI	GAAGAC	2 cut(s)	975, 1466
BpmI	CTGGAG	3 cut(s)	983, 1697, 2210
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	916
BpuEI	CTTGAG	1 cut(s)	1499
BpuMI	CCSGG	4 cut(s)	210, 243, 339, 340
BsaAI	YACGTR	3 cut(s)	542, 1139, 1399
BsaBI	GATNNNNATC	3 cut(s)	1044, 1413, 1578
BsaHI	GRCGYC	2 cut(s)	78, 149
BsaJI	CCNNGG	5 cut(s)	187, 208, 338, 1320, 2071
BsaWI	WCCGGW	1 cut(s)	1899
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 1383, 1413
Bsc4I	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
Bse118I	RCCGGY	2 cut(s)	23, 1057
Bse1I	ACTGG	6 cut(s)	503, 871, 1000, 1082, 1262, 1680
Bse3DI	GCAATG	1 cut(s)	930
Bse8I	GATNNNNATC	3 cut(s)	1044, 1413, 1578
BseAI	TCCGGA	1 cut(s)	1899
BseBI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2072
BseDI	CCNNGG	5 cut(s)	187, 208, 338, 1320, 2071
BseGI	GGATG	3 cut(s)	322, 418, 1715
BseJI	GATNNNNATC	3 cut(s)	1044, 1413, 1578
BseLI	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	6 cut(s)	153, 263, 347, 407, 1469, 1823
BseNI	ACTGG	6 cut(s)	503, 871, 1000, 1082, 1262, 1680
BseRI	GAGGAG	3 cut(s)	94, 97, 381
BseSI	GKGCMC	2 cut(s)	1612, 1839
BseYI	CCCAGC	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	8 cut(s)	51, 186, 192, 343, 418, 1061, 1452, 2009
BshNI	GGYRCC	2 cut(s)	77, 830
BsiHKAI	GWGCWC	5 cut(s)	257, 736, 1612, 1839, 2113
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1900
BslFI	GGGAC	3 cut(s)	853, 1088, 1316
BslI	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
BsmFI	GGGAC	3 cut(s)	853, 1088, 1316
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	8 cut(s)	51, 186, 192, 343, 418, 1061, 1452, 2009
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	6 cut(s)	257, 736, 808, 1612, 1839, 2113
Bsp13I	TCCGGA	1 cut(s)	1899
Bsp143I	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
Bsp1720I	GCTNAGC	1 cut(s)	916
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	4 cut(s)	27, 41, 167, 1922
BspANI	GGCC	8 cut(s)	51, 186, 192, 343, 418, 1061, 1452, 2009
BspCNI	CTCAG	6 cut(s)	154, 262, 346, 406, 1470, 1822
BspEI	TCCGGA	1 cut(s)	1899
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	6 cut(s)	45, 79, 103, 214, 832, 1159
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	4 cut(s)	204, 598, 1100, 1586
BspOI	GCTAGC	1 cut(s)	959
BspPI	GGATC	2 cut(s)	785, 1616
BspT107I	GGYRCC	2 cut(s)	77, 830
BsrDI	GCAATG	1 cut(s)	930
BsrFI	RCCGGY	2 cut(s)	23, 1057
BsrI	ACTGG	6 cut(s)	503, 871, 1000, 1082, 1262, 1680
BssAI	RCCGGY	2 cut(s)	23, 1057
BssECI	CCNNGG	5 cut(s)	187, 208, 338, 1320, 2071
BssMI	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
BssNAI	GTATAC	1 cut(s)	539
BssNI	GRCGYC	2 cut(s)	78, 149
BssT1I	CCWWGG	1 cut(s)	187
Bst1107I	GTATAC	1 cut(s)	539
Bst2UI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2072
Bst4CI	ACNGT	5 cut(s)	644, 867, 1307, 1970, 2141
BstACI	GRCGYC	2 cut(s)	78, 149
BstAPI	GCANNNNNTGC	2 cut(s)	38, 1493
BstBAI	YACGTR	3 cut(s)	542, 1139, 1399
BstDEI	CTNAG	8 cut(s)	162, 249, 333, 393, 916, 1239, 1478, 1809
BstDSI	CCRYGG	1 cut(s)	187
BstEII	GGTNACC	1 cut(s)	1427
BstF5I	GGATG	3 cut(s)	322, 418, 1715
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	4 cut(s)	12, 80, 745, 1561
BstKTI	GATC	7 cut(s)	547, 784, 793, 889, 1219, 1582, 1624
BstMBI	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
BstNI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2072
BstNSI	RCATGY	3 cut(s)	1250, 1565, 2191
BstPI	GGTNACC	1 cut(s)	1427
BstSCI	CCNGG	9 cut(s)	46, 208, 241, 337, 338, 727, 1319, 1452, 2070
BstSFI	CTRYAG	2 cut(s)	882, 1590
BstSLI	GKGCMC	2 cut(s)	1612, 1839
BstSNI	TACGTA	1 cut(s)	1399
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	2 cut(s)	975, 1466
BstXI	CCANNNNNNTGG	2 cut(s)	559, 1733
BstZ17I	GTATAC	1 cut(s)	539
BsuRI	GGCC	8 cut(s)	51, 186, 192, 343, 418, 1061, 1452, 2009
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	322, 418, 1715
BtsI	GCAGTG	1 cut(s)	1494
BtsIMutI	CAGTG	8 cut(s)	510, 649, 756, 1226, 1494, 1804, 1975, 2111
BveI	ACCTGC	4 cut(s)	204, 598, 1100, 1586
CfoI	GCGC	4 cut(s)	12, 80, 745, 1561
Cfr10I	RCCGGY	2 cut(s)	23, 1057
Cfr13I	GGNCC	6 cut(s)	341, 416, 662, 1112, 1157, 2008
Cfr9I	CCCGGG	1 cut(s)	338
CseI	GACGC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	727
Csp6I	GTAC	3 cut(s)	1342, 1771, 1844
CviQI	GTAC	3 cut(s)	1342, 1771, 1844
DdeI	CTNAG	8 cut(s)	162, 249, 333, 393, 916, 1239, 1478, 1809
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	7 cut(s)	546, 783, 792, 888, 1218, 1581, 1623
DpnII	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
DraIII	CACNNNGTG	1 cut(s)	965
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	3 cut(s)	184, 190, 1059
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	255
Eco105I	TACGTA	1 cut(s)	1399
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	257, 808
Eco47I	GGWCC	3 cut(s)	662, 1112, 1157
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	1527, 1554
Eco72I	CACGTG	1 cut(s)	1139
Eco88I	CYCGRG	1 cut(s)	338
Eco91I	GGTNACC	1 cut(s)	1427
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	3 cut(s)	662, 1112, 2008
EcoO65I	GGTNACC	1 cut(s)	1427
EcoRII	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2070
EcoT14I	CCWWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	257, 808
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	187
FalI	AAGNNNNNCTT	6 cut(s)	1476, 1508, 1629, 1661, 2146, 2178
FaqI	GGGAC	3 cut(s)	853, 1088, 1316
FauNDI	CATATG	3 cut(s)	351, 891, 1420
FbaI	TGATCA	2 cut(s)	1216, 1579
FblI	GTMKAC	2 cut(s)	146, 538
FokI	GGATG	3 cut(s)	329, 425, 1722
FriOI	GRGCYC	2 cut(s)	257, 808
FspBI	CTAG	6 cut(s)	689, 956, 1116, 2012, 2178, 2216
FspI	TGCGCA	1 cut(s)	744
GlaI	GCGC	4 cut(s)	11, 79, 744, 1560
GsaI	CCCAGC	1 cut(s)	844
GsuI	CTGGAG	3 cut(s)	983, 1697, 2210
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	8 cut(s)	51, 186, 192, 343, 418, 1061, 1452, 2009
HapII	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1900
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	4 cut(s)	12, 80, 745, 1561
Hin1I	GRCGYC	2 cut(s)	78, 149
Hin6I	GCGC	4 cut(s)	10, 78, 743, 1559
HinP1I	GCGC	4 cut(s)	10, 78, 743, 1559
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	4 cut(s)	439, 913, 1946, 2196
HpaII	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1900
HphI	GGTGA	7 cut(s)	536, 800, 1037, 1298, 1421, 1715, 1809
Hpy166II	GTNNAC	7 cut(s)	147, 539, 1028, 1182, 1396, 1610, 1837
Hpy188III	TCNNGA	8 cut(s)	179, 683, 1516, 1634, 1869, 1900, 2216, 2227
Hpy8I	GTNNAC	7 cut(s)	147, 539, 1028, 1182, 1396, 1610, 1837
Hpy99I	CGWCG	3 cut(s)	148, 151, 185
HpyAV	CCTTC	5 cut(s)	124, 150, 681, 1283, 1529
HpyCH4III	ACNGT	5 cut(s)	644, 867, 1307, 1970, 2141
HpyCH4IV	ACGT	4 cut(s)	541, 1138, 1398, 2095
HpyF3I	CTNAG	8 cut(s)	162, 249, 333, 393, 916, 1239, 1478, 1809
HpySE526I	ACGT	4 cut(s)	541, 1138, 1398, 2095
Hsp92I	GRCGYC	2 cut(s)	78, 149
HspAI	GCGC	4 cut(s)	10, 78, 743, 1559
KasI	GGCGCC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	1899
KroI	GCCGGC	1 cut(s)	1057
KroNI	GCCGGC	1 cut(s)	1059
Ksp22I	TGATCA	2 cut(s)	1216, 1579
Kzo9I	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
LmnI	GCTCC	9 cut(s)	29, 107, 210, 218, 383, 499, 928, 1678, 1952
LweI	GCATC	7 cut(s)	564, 1091, 1369, 1593, 1816, 1975, 2064
MabI	ACCWGGT	1 cut(s)	727
MaeI	CTAG	6 cut(s)	689, 956, 1116, 2012, 2178, 2216
MaeII	ACGT	4 cut(s)	541, 1138, 1398, 2095
MaeIII	GTNAC	7 cut(s)	19, 524, 754, 1427, 1713, 1815, 2096
MalI	GATC	7 cut(s)	546, 783, 792, 888, 1218, 1581, 1623
MboI	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
MboII	GAAGA	7 cut(s)	48, 51, 257, 602, 618, 980, 1466
MhlI	GDGCHC	6 cut(s)	257, 736, 808, 1612, 1839, 2113
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	6 cut(s)	761, 796, 851, 1268, 1327, 2157
MluNI	TGGCCA	1 cut(s)	192
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	4 cut(s)	1027, 1287, 1669, 1901
MmeI	TCCRAC	2 cut(s)	1520, 1649
Mox20I	TGGCCA	1 cut(s)	192
Mph1103I	ATGCAT	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	1899
MroNI	GCCGGC	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	1641
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	4 cut(s)	600, 1326, 1347, 2153
MslI	CAYNNNNRTG	3 cut(s)	1251, 1377, 1668
Msp20I	TGGCCA	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	1313, 1688
MspI	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1900
MspR9I	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2072
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2072
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	1 cut(s)	1059
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	4 cut(s)	210, 243, 339, 340
NcoI	CCATGG	1 cut(s)	187
NdeI	CATATG	3 cut(s)	351, 891, 1420
NdeII	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
NgoMIV	GCCGGC	1 cut(s)	1057
NheI	GCTAGC	1 cut(s)	955
NlaIV	GGNNCC	6 cut(s)	45, 79, 103, 214, 832, 1159
NmuCI	GTSAC	4 cut(s)	524, 754, 1427, 1815
NsbI	TGCGCA	1 cut(s)	744
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	3 cut(s)	1250, 1565, 2191
PaeI	GCATGC	1 cut(s)	1565
PaqCI	CACCTGC	1 cut(s)	204
PciI	ACATGT	1 cut(s)	2187
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 1404
PctI	GAATGC	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	1059
PdmI	GAANNNNTTC	1 cut(s)	1641
PfeI	GAWTC	7 cut(s)	707, 1414, 1763, 2087, 2122, 2204, 2212
PflMI	CCANNNNNTGG	3 cut(s)	840, 1167, 1424
PleI	GAGTC	4 cut(s)	1026, 1287, 1668, 1900
PluTI	GGCGCC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	1139
PmlI	CACGTG	1 cut(s)	1139
PpsI	GAGTC	4 cut(s)	1026, 1287, 1668, 1900
Ppu21I	YACGTR	3 cut(s)	542, 1139, 1399
PpuMI	RGGWCCY	2 cut(s)	662, 1112
PscI	ACATGT	1 cut(s)	2187
PshBI	ATTAAT	2 cut(s)	600, 1347
Psp124BI	GAGCTC	1 cut(s)	257
Psp5II	RGGWCCY	2 cut(s)	662, 1112
Psp6I	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2070
PspCI	CACGTG	1 cut(s)	1139
PspEI	GGTNACC	1 cut(s)	1427
PspFI	CCCAGC	1 cut(s)	840
PspGI	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2070
PspN4I	GGNNCC	6 cut(s)	45, 79, 103, 214, 832, 1159
PspPI	GGNCC	6 cut(s)	341, 416, 662, 1112, 1157, 2008
PspPPI	RGGWCCY	2 cut(s)	662, 1112
PstI	CTGCAG	1 cut(s)	886
PvuII	CAGCTG	2 cut(s)	1313, 1688
RsaI	GTAC	3 cut(s)	1343, 1772, 1845
RsaNI	GTAC	3 cut(s)	1342, 1771, 1844
RseI	CAYNNNNRTG	3 cut(s)	1251, 1377, 1668
SacI	GAGCTC	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	145
SaqAI	TTAA	4 cut(s)	600, 1326, 1347, 2153
Sau3AI	GATC	7 cut(s)	544, 781, 790, 886, 1216, 1579, 1621
Sau96I	GGNCC	6 cut(s)	341, 416, 662, 1112, 1157, 2008
ScaI	AGTACT	1 cut(s)	1845
SchI	GAGTC	4 cut(s)	1027, 1287, 1669, 1901
ScrFI	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2072
SduI	GDGCHC	6 cut(s)	257, 736, 808, 1612, 1839, 2113
SexAI	ACCWGGT	1 cut(s)	727
SfaNI	GCATC	7 cut(s)	564, 1091, 1369, 1593, 1816, 1975, 2064
SfcI	CTRYAG	2 cut(s)	882, 1590
SfoI	GGCGCC	1 cut(s)	79
SgrDI	CGTCGACG	1 cut(s)	145
SinI	GGWCC	3 cut(s)	662, 1112, 1157
SmaI	CCCGGG	1 cut(s)	340
SmiMI	CAYNNNNRTG	3 cut(s)	1251, 1377, 1668
SmlI	CTYRAG	1 cut(s)	1514
SmoI	CTYRAG	1 cut(s)	1514
SnaBI	TACGTA	1 cut(s)	1399
SphI	GCATGC	1 cut(s)	1565
SrfI	GCCCGGGC	1 cut(s)	340
Sse9I	AATT	6 cut(s)	761, 796, 851, 1268, 1327, 2157
SsiI	CCGC	4 cut(s)	27, 41, 167, 1922
SspDI	GGCGCC	1 cut(s)	77
SspI	AATATT	2 cut(s)	1700, 2150
SspMI	CTAG	6 cut(s)	689, 956, 1116, 2012, 2178, 2216
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	9 cut(s)	46, 208, 241, 337, 338, 727, 1319, 1452, 2070
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	5 cut(s)	644, 867, 1307, 1970, 2141
TaiI	ACGT	4 cut(s)	544, 1141, 1401, 2098
TaqI	TCGA	3 cut(s)	146, 1635, 1890
TasI	AATT	6 cut(s)	761, 796, 851, 1268, 1327, 2157
TatI	WGTACW	3 cut(s)	1341, 1770, 1843
TauI	GCSGC	2 cut(s)	169, 1924
TfiI	GAWTC	7 cut(s)	707, 1414, 1763, 2087, 2122, 2204, 2212
Tru1I	TTAA	4 cut(s)	600, 1326, 1347, 2153
Tru9I	TTAA	4 cut(s)	600, 1326, 1347, 2153
TscAI	CASTG	8 cut(s)	510, 649, 763, 1226, 1494, 1804, 1975, 2118
TseFI	GTSAC	4 cut(s)	524, 754, 1427, 1815
Tsp45I	GTSAC	4 cut(s)	524, 754, 1427, 1815
TspDTI	ATGAA	6 cut(s)	720, 789, 1320, 1427, 1686, 2135
TspGWI	ACGGA	1 cut(s)	271
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	8 cut(s)	510, 649, 763, 1226, 1494, 1804, 1975, 2118
Van91I	CCANNNNNTGG	3 cut(s)	840, 1167, 1424
VneI	GTGCAC	2 cut(s)	1608, 1835
VpaK11BI	GGWCC	3 cut(s)	662, 1112, 1157
VspI	ATTAAT	2 cut(s)	600, 1347
XapI	RAATTY	4 cut(s)	761, 851, 1268, 2157
XbaI	TCTAGA	1 cut(s)	2215
XceI	RCATGY	3 cut(s)	1250, 1565, 2191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmaI	CCCGGG	1 cut(s)	338
XmiI	GTMKAC	2 cut(s)	146, 538
XmnI	GAANNNNTTC	1 cut(s)	1641
XspI	CTAG	6 cut(s)	689, 956, 1116, 2012, 2178, 2216
ZrmI	AGTACT	1 cut(s)	1845
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.