Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Forward (+)

9257962 .. 9266281

Gene Structure 8320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGGCGATGCGTGAGCTTGTCACCGGCGGAGCAGCCTGCGCCGTTCCGGGCTCATCTTCGTCCTCCAATCCCTTCGGCAATCTCGCCAGCGCTCTTCTCAACTCTTCCGCCAAAGGCCAGGACTTAAAGGAGCTGCCTTCTTCGCTGCCCACGAGCTCCGAGGCTCAGTTTTACCCGGAGGCACATGGCCCACAGCTGCCGGGGTCGGAGTTTGACCAGCCCTACATGCAACCCGGAACCCAGAGCTCAGACTTTCTTCGCAATTTTAACTCTGTTGGTGGTGGCAATGGACTGCTTGAAAATGCGTGGGATGAGGTACAAGGCTCTCACCCTCCTCCTCCTCCTATGCACGGCCCTCAGGTTATGTATGATCGCGGCGCCGCTGCCCAGCTTCAACCAACATTGGATGGGCCACCACAGAGAGTGCTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGCCGTGGTGGGATACCTTTCCGTCCCACTCAACTTCCAGTGCTGGGATTGTCTGCTGGTGACAAGCAATGCATACGTGATCGCAGCAGCATCATGGCCCGACACTTTTTTGCAGATAAGAGCGAGGATTTTATTAATGGCCAGGTAAATGCACTTCTATGCTCGCTAGATATTGACGGTGAAGCCAACAGTAAAGGGCCTCTCCCTGCAAGGTTCCGGGAACTAGAGGGTTATTGGAACGAATCCCAAGCTATCCAGAAACCTGTTGCTCATGCTACAGATGGGTGGGTCACAGAATTTAGCCAACACAGAGTAGATCGTGGTGATCCTAATGTGTGGGCTCACTCATTTGAGCAACAACATGGTGCCAATGGTTGGGCATCTGAATTCGAGCAGGAACAGTCTCAGATGATGTCTGCAGATCATATGAGAGGTGGAAATATGGCAAGCTTAGCTGCAATGGAGCAGACTCGTATGCTTGCTAATACATTAGCACAGAATGAGGACCCAAAATTTCAGAAGTCAAGGTTTCTCCAGTTTGTATCAAAGATGAGTCGTGGTGAACTTATTATTGATGATAATCAAGTCAAGCAAGCCACGTCATCTACTGCTGGGGATTGGGCAGGAGAATATCAACAGCAGTACAATGCGGGTTCTAATTGGGCTAACGAATATCAGCATGGGGAGGTGGAGATATCTCGTGCCAATCAATGGGCAAATGAGTTTGGTTCTGAACAAGAGCAACATGGGTCAGTTGATGATCAGTGGGTCAATCAATTCTCTAAGTTGCATGTTGATGACTGGGCAGAGGAATTTGGAAATCAGGTTGGTGAAGGAATATTGGGGGACAGTTCTGCTGATAGCTGGGCTAACGCATATGATGAGTTCCTAAATGAGCAAGTAGCTTCCAAGCAGCGATTGGATAGTTCAAGGGGCGTCTATGTCTTTTCTGATATGAACCCTTATGTTGGTCACCCAAACCCACTAAAAGAAGGCCAGGACATGTTCCATAAAGGTCTTTTGAGTGAAGCAGTGCTTGCTTTGGAAGCTGAAGTGCTCAAGAACCCTGACAATGCTGAAGGTTGGAGGCTACTTGGAATAGCACATGCAGAAAATGATGATGATCAACAGGCTATTGCAGCCATGATGCGTGCACAGGAGGCTGATCCAACTAATCTAGAAGTGCTTCTTGCCCTTGGAGTGAGCCATACTAATGAATTGGAGCAGTCGGCTGCTTTGAAATATTTATATGGATGGCTACGTAATCACCCAAAGTATGGAGTGCTTGCGCGACCAGAGTTGTCAGATTCTTTGTACTATGCTGATGTTGCAAGAACTTTCAATGAAGCTGCTCAAATGTCACCTGAGGATGCTGACGTGCATATAGTTCTTGGTGTCCTCTACAACTTATCAAGAGAATATGACAAAGCCATTGAGTCCTTCAGGACAGCTTTAAAACTGAAGCCGCAGGATTACTCTCTTTGGAACAAGCTTGGAGCAACACAAGCAAACAGTGTTCAGAGTGCTGATGCAATATTGGCTTATCAACAGGCACTAGATTTGAAGCCCAACTATGTTCGTGCATGGGCTAATATGGGTATCAGCTATGCCAACCAGGGCATGTATGAGGATTCCATACGTTACTATGTTCGAGCACTTACCATGAATCCAAAGGCAGATAACGGTTGGCAGTACTTAAGAATTTCTTTAAGTTGTGCTTCTAGGAGTGACATGTTGGAAGCTTGTGATTCTCGGAATCTAGACATTCTCCAGAAGGAGTTTCCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

749

Amino Acids

82.94

Weight (kDa)

4.77

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CcmH_CycH	PF23914	494 - 552	1e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_CcmH_CycH	PF23914	605 - 714	2.5e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_1	PF00515	611 - 644	3.6e-06	Tetratricopeptide repeat
TPR_11	PF13414	663 - 693	9.9e-07	TPR repeat
TPR_1	PF00515	680 - 711	8e-08	Tetratricopeptide repeat
TPR_2	PF07719	680 - 711	7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2248
AccB1I	GGYRCC	2 cut(s)	377, 824
AccB7I	CCANNNNNTGG	3 cut(s)	834, 1170, 1736
AccII	CGCG	2 cut(s)	375, 1750
AciI	CCGC	6 cut(s)	27, 108, 375, 381, 1109, 1925
AclWI	GGATC	2 cut(s)	779, 1619
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	5 cut(s)	755, 845, 971, 1271, 2160
AcuI	CTGAAG	4 cut(s)	1530, 1557, 1885, 1940
AcyI	GRCGYC	2 cut(s)	378, 1395
AfaI	GTAC	4 cut(s)	318, 1103, 1775, 2153
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	6 cut(s)	350, 503, 834, 1170, 1427, 1736
AflII	CTTAAG	1 cut(s)	2155
AflIII	ACRYGT	2 cut(s)	1461, 2190
AgsI	TTSAA	7 cut(s)	299, 395, 455, 1389, 1699, 1801, 2023
AjiI	CACGTC	2 cut(s)	1059, 1837
AjnI	CCWGG	4 cut(s)	117, 600, 1455, 2073
Alw21I	GWGCWC	5 cut(s)	158, 248, 1518, 1615, 2116
Alw26I	GTCTC	1 cut(s)	867
Alw44I	GTGCAC	1 cut(s)	1611
AlwI	GGATC	2 cut(s)	779, 1619
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	8 cut(s)	115, 187, 352, 410, 555, 598, 656, 1453
ApaLI	GTGCAC	1 cut(s)	1611
ApoI	RAATTY	5 cut(s)	755, 845, 971, 1271, 2160
AseI	ATTAAT	1 cut(s)	594
Asp700I	GAANNNNTTC	1 cut(s)	1644
AspLEI	GCGC	4 cut(s)	41, 92, 380, 1750
AspS9I	GGNCC	6 cut(s)	188, 353, 410, 556, 656, 964
AsuC2I	CCSGG	5 cut(s)	48, 176, 201, 234, 677
AvaII	GGWCC	1 cut(s)	964
AxyI	CCTNAGG	2 cut(s)	357, 1824
BaeGI	GKGCMC	1 cut(s)	1615
BalI	TGGCCA	1 cut(s)	600
BanI	GGYRCC	2 cut(s)	377, 824
BanII	GRGCYC	4 cut(s)	53, 158, 248, 802
BarI	GAAGNNNNNNTAC	2 cut(s)	597, 629
BauI	CACGAG	2 cut(s)	151, 1158
Bbv12I	GWGCWC	5 cut(s)	158, 248, 1518, 1615, 2116
BccI	CCATC	3 cut(s)	401, 734, 1707
BceAI	ACGGC	3 cut(s)	26, 367, 447
BciT130I	CCWGG	4 cut(s)	119, 602, 1457, 2075
BciVI	GTATCC	1 cut(s)	465
BclI	TGATCA	2 cut(s)	1219, 1582
BcnI	CCSGG	5 cut(s)	48, 176, 201, 234, 677
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	6 cut(s)	626, 683, 1637, 2015, 2181, 2219
BfmI	CTRYAG	2 cut(s)	735, 876
BfoI	RGCGCY	2 cut(s)	93, 381
BfrI	CTTAAG	1 cut(s)	2155
BfuI	GTATCC	1 cut(s)	465
BlpI	GCTNAGC	1 cut(s)	910
BmcAI	AGTACT	1 cut(s)	2153
Bme1390I	CCNGG	9 cut(s)	48, 119, 176, 201, 234, 602, 677, 1457, 2075
Bme18I	GGWCC	1 cut(s)	964
BmgBI	CACGTC	2 cut(s)	1059, 1837
BmgT120I	GGNCC	6 cut(s)	188, 353, 410, 556, 656, 964
BmiI	GGNNCC	5 cut(s)	238, 379, 674, 826, 966
BmrFI	CCNGG	9 cut(s)	48, 119, 176, 201, 234, 602, 677, 1457, 2075
BmrI	ACTGGG	1 cut(s)	1270
BmsI	GCATC	5 cut(s)	558, 848, 1596, 1819, 1978
BmuI	ACTGGG	1 cut(s)	1270
BpmI	CTGGAG	2 cut(s)	977, 2213
Bpu1102I	GCTNAGC	1 cut(s)	910
BpuEI	CTTGAG	1 cut(s)	1502
BpuMI	CCSGG	5 cut(s)	48, 176, 201, 234, 677
BsaAI	YACGTR	2 cut(s)	536, 1721
BsaBI	GATNNNNATC	2 cut(s)	1038, 1581
BsaHI	GRCGYC	2 cut(s)	378, 1395
BsaJI	CCNNGG	5 cut(s)	159, 200, 463, 1654, 2074
Bsc4I	CCNNNNNNNGG	6 cut(s)	350, 503, 834, 1170, 1427, 1736
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	3 cut(s)	497, 994, 1265
Bse21I	CCTNAGG	2 cut(s)	357, 1824
Bse3DI	GCAATG	3 cut(s)	292, 533, 924
Bse8I	GATNNNNATC	2 cut(s)	1038, 1581
BseBI	CCWGG	4 cut(s)	119, 602, 1457, 2075
BseDI	CCNNGG	5 cut(s)	159, 200, 463, 1654, 2074
BseGI	GGATG	4 cut(s)	316, 412, 1718, 1834
BseJI	GATNNNNATC	2 cut(s)	1038, 1581
BseLI	CCNNNNNNNGG	6 cut(s)	350, 503, 834, 1170, 1427, 1736
BseMI	GCAATG	3 cut(s)	292, 533, 924
BseMII	CTCAG	5 cut(s)	179, 261, 371, 878, 1815
BseNI	ACTGG	3 cut(s)	497, 994, 1265
BseRI	GAGGAG	3 cut(s)	324, 327, 330
BseSI	GKGCMC	1 cut(s)	1615
BseYI	CCCAGC	4 cut(s)	387, 502, 1070, 1323
Bsh1236I	CGCG	2 cut(s)	375, 1750
BshFI	GGCC	8 cut(s)	117, 189, 354, 412, 557, 600, 658, 1455
BshNI	GGYRCC	2 cut(s)	377, 824
BsiHKAI	GWGCWC	5 cut(s)	158, 248, 1518, 1615, 2116
BsiSI	CCGG	6 cut(s)	24, 47, 176, 200, 234, 676
BslFI	GGGAC	2 cut(s)	468, 1319
BslI	CCNNNNNNNGG	6 cut(s)	350, 503, 834, 1170, 1427, 1736
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	2 cut(s)	468, 1319
BsnI	GGCC	8 cut(s)	117, 189, 354, 412, 557, 600, 658, 1455
Bsp1286I	GDGCHC	7 cut(s)	53, 158, 248, 802, 1518, 1615, 2116
Bsp143I	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
Bsp1720I	GCTNAGC	1 cut(s)	910
BspACI	CCGC	6 cut(s)	27, 108, 375, 381, 1109, 1925
BspANI	GGCC	8 cut(s)	117, 189, 354, 412, 557, 600, 658, 1455
BspCNI	CTCAG	5 cut(s)	178, 260, 370, 877, 1816
BspFNI	CGCG	2 cut(s)	375, 1750
BspLI	GGNNCC	5 cut(s)	238, 379, 674, 826, 966
BspMAI	CTGCAG	1 cut(s)	880
BspPI	GGATC	2 cut(s)	779, 1619
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	377, 824
BspTI	CTTAAG	1 cut(s)	2155
BsrDI	GCAATG	3 cut(s)	292, 533, 924
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	497, 994, 1265
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	5 cut(s)	159, 200, 463, 1654, 2074
BssMI	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
BssNI	GRCGYC	2 cut(s)	378, 1395
BssSI	CACGAG	2 cut(s)	151, 1158
BssT1I	CCWWGG	1 cut(s)	1654
Bst2BI	CACGAG	2 cut(s)	151, 1158
Bst2UI	CCWGG	4 cut(s)	119, 602, 1457, 2075
Bst4CI	ACNGT	6 cut(s)	638, 650, 861, 1310, 1973, 2144
Bst6I	CTCTTC	2 cut(s)	99, 109
BstACI	GRCGYC	2 cut(s)	378, 1395
BstAFI	CTTAAG	1 cut(s)	2155
BstAPI	GCANNNNNTGC	1 cut(s)	1496
BstBAI	YACGTR	2 cut(s)	536, 1721
BstC8I	GCNNGC	9 cut(s)	37, 88, 623, 907, 939, 1053, 1497, 1611, 1746
BstDEI	CTNAG	7 cut(s)	165, 247, 357, 864, 910, 1242, 1824
BstDSI	CCRYGG	1 cut(s)	463
BstEII	GGTNACC	1 cut(s)	1430
BstF5I	GGATG	4 cut(s)	316, 412, 1718, 1834
BstFNI	CGCG	2 cut(s)	375, 1750
BstH2I	RGCGCY	2 cut(s)	93, 381
BstHHI	GCGC	4 cut(s)	41, 92, 380, 1750
BstKTI	GATC	8 cut(s)	373, 541, 778, 787, 883, 1222, 1585, 1627
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
BstNI	CCWGG	4 cut(s)	119, 602, 1457, 2075
BstNSI	RCATGY	6 cut(s)	229, 1253, 1465, 1568, 2083, 2194
BstPI	GGTNACC	1 cut(s)	1430
BstSCI	CCNGG	9 cut(s)	46, 117, 174, 199, 232, 600, 675, 1455, 2073
BstSFI	CTRYAG	2 cut(s)	735, 876
BstSLI	GKGCMC	1 cut(s)	1615
BstSNI	TACGTA	1 cut(s)	1721
BstUI	CGCG	2 cut(s)	375, 1750
Bsu36I	CCTNAGG	2 cut(s)	357, 1824
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	8 cut(s)	117, 189, 354, 412, 557, 600, 658, 1455
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	2 cut(s)	1059, 1837
BtsCI	GGATG	4 cut(s)	316, 412, 1718, 1834
BtsI	GCAGTG	1 cut(s)	1497
BtsIMutI	CAGTG	4 cut(s)	504, 1229, 1497, 1978
Cac8I	GCNNGC	9 cut(s)	37, 88, 623, 907, 939, 1053, 1497, 1611, 1746
CfoI	GCGC	4 cut(s)	41, 92, 380, 1750
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	6 cut(s)	188, 353, 410, 556, 656, 964
CseI	GACGC	1 cut(s)	1384
Csp6I	GTAC	4 cut(s)	317, 1102, 1774, 2152
CviQI	GTAC	4 cut(s)	317, 1102, 1774, 2152
DdeI	CTNAG	7 cut(s)	165, 247, 357, 864, 910, 1242, 1824
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	8 cut(s)	372, 540, 777, 786, 882, 1221, 1584, 1626
DpnII	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
DraI	TTTAAA	1 cut(s)	1914
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	2 cut(s)	99, 109
EarI	CTCTTC	2 cut(s)	99, 109
EciI	GGCGGA	2 cut(s)	42, 97
Ecl136II	GAGCTC	2 cut(s)	156, 246
Eco105I	TACGTA	1 cut(s)	1721
Eco130I	CCWWGG	1 cut(s)	1654
Eco24I	GRGCYC	4 cut(s)	53, 158, 248, 802
Eco32I	GATATC	1 cut(s)	1155
Eco47I	GGWCC	1 cut(s)	964
Eco47III	AGCGCT	1 cut(s)	91
Eco53kI	GAGCTC	2 cut(s)	156, 246
Eco57I	CTGAAG	4 cut(s)	1530, 1557, 1885, 1940
Eco81I	CCTNAGG	2 cut(s)	357, 1824
Eco91I	GGTNACC	1 cut(s)	1430
EcoICRI	GAGCTC	2 cut(s)	156, 246
EcoO109I	RGGNCCY	2 cut(s)	656, 964
EcoO65I	GGTNACC	1 cut(s)	1430
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	4 cut(s)	117, 600, 1455, 2073
EcoRV	GATATC	1 cut(s)	1155
EcoT14I	CCWWGG	1 cut(s)	1654
EcoT22I	ATGCAT	1 cut(s)	533
EcoT38I	GRGCYC	4 cut(s)	53, 158, 248, 802
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	1654
FalI	AAGNNNNNCTT	8 cut(s)	1479, 1511, 1632, 1664, 2149, 2181, 2161, 2193
FaqI	GGGAC	2 cut(s)	468, 1319
FauI	CCCGC	1 cut(s)	1102
FauNDI	CATATG	2 cut(s)	885, 1336
FbaI	TGATCA	2 cut(s)	1219, 1582
FokI	GGATG	4 cut(s)	323, 419, 1725, 1841
FriOI	GRGCYC	4 cut(s)	53, 158, 248, 802
FspBI	CTAG	6 cut(s)	626, 683, 1637, 2015, 2181, 2219
GlaI	GCGC	4 cut(s)	40, 91, 379, 1749
GsaI	CCCAGC	4 cut(s)	391, 506, 1074, 1327
GsuI	CTGGAG	2 cut(s)	977, 2213
HaeII	RGCGCY	2 cut(s)	93, 381
HaeIII	GGCC	8 cut(s)	117, 189, 354, 412, 557, 600, 658, 1455
HapII	CCGG	6 cut(s)	24, 47, 176, 200, 234, 676
HgaI	GACGC	1 cut(s)	1384
HhaI	GCGC	4 cut(s)	41, 92, 380, 1750
Hin1I	GRCGYC	2 cut(s)	378, 1395
Hin6I	GCGC	4 cut(s)	39, 90, 378, 1748
HinP1I	GCGC	4 cut(s)	39, 90, 378, 1748
HindIII	AAGCTT	4 cut(s)	433, 907, 1949, 2199
HinfI	GANTC	9 cut(s)	701, 928, 1012, 1766, 1895, 2090, 2125, 2207, 2215
HpaII	CCGG	6 cut(s)	24, 47, 176, 200, 234, 676
Hpy166II	GTNNAC	2 cut(s)	1022, 1613
Hpy188III	TCNNGA	7 cut(s)	715, 1519, 1637, 1872, 1903, 2219, 2230
Hpy8I	GTNNAC	2 cut(s)	1022, 1613
HpyAV	CCTTC	7 cut(s)	82, 147, 1286, 1445, 1532, 1909, 2227
HpyCH4III	ACNGT	6 cut(s)	638, 650, 861, 1310, 1973, 2144
HpyCH4IV	ACGT	5 cut(s)	535, 1058, 1720, 1836, 2098
HpyF3I	CTNAG	7 cut(s)	165, 247, 357, 864, 910, 1242, 1824
HpySE526I	ACGT	5 cut(s)	535, 1058, 1720, 1836, 2098
Hsp92I	GRCGYC	2 cut(s)	378, 1395
HspAI	GCGC	4 cut(s)	39, 90, 378, 1748
KasI	GGCGCC	1 cut(s)	377
Ksp22I	TGATCA	2 cut(s)	1219, 1582
Kzo9I	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	6 cut(s)	29, 130, 161, 922, 1681, 1955
LweI	GCATC	5 cut(s)	558, 848, 1596, 1819, 1978
MaeI	CTAG	6 cut(s)	626, 683, 1637, 2015, 2181, 2219
MaeII	ACGT	5 cut(s)	535, 1058, 1720, 1836, 2098
MaeIII	GTNAC	7 cut(s)	19, 518, 748, 1430, 1818, 2099, 2186
MalI	GATC	8 cut(s)	372, 540, 777, 786, 882, 1221, 1584, 1626
MboI	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
MboII	GAAGA	5 cut(s)	48, 86, 96, 132, 248
MhlI	GDGCHC	7 cut(s)	53, 158, 248, 802, 1518, 1615, 2116
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	9 cut(s)	262, 755, 845, 971, 1117, 1235, 1271, 1676, 2160
MluNI	TGGCCA	1 cut(s)	600
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	3 cut(s)	922, 1021, 1904
MmeI	TCCRAC	4 cut(s)	186, 1523, 1652, 2175
Mox20I	TGGCCA	1 cut(s)	600
Mph1103I	ATGCAT	1 cut(s)	533
MroXI	GAANNNNTTC	1 cut(s)	1644
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	6 cut(s)	125, 267, 594, 1913, 2156, 2168
MslI	CAYNNNNRTG	3 cut(s)	616, 1254, 1671
Msp20I	TGGCCA	1 cut(s)	600
MspA1I	CMGCKG	2 cut(s)	196, 383
MspCI	CTTAAG	1 cut(s)	2155
MspI	CCGG	6 cut(s)	24, 47, 176, 200, 234, 676
MspR9I	CCNGG	9 cut(s)	48, 119, 176, 201, 234, 602, 677, 1457, 2075
MvaI	CCWGG	4 cut(s)	119, 602, 1457, 2075
MvnI	CGCG	2 cut(s)	375, 1750
NarI	GGCGCC	1 cut(s)	378
NciI	CCSGG	5 cut(s)	48, 176, 201, 234, 677
NdeI	CATATG	2 cut(s)	885, 1336
NdeII	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
NlaIV	GGNNCC	5 cut(s)	238, 379, 674, 826, 966
NmuCI	GTSAC	6 cut(s)	19, 518, 748, 1430, 1818, 2186
NsiI	ATGCAT	1 cut(s)	533
NspI	RCATGY	6 cut(s)	229, 1253, 1465, 1568, 2083, 2194
PciI	ACATGT	2 cut(s)	1461, 2190
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	1644
PfeI	GAWTC	6 cut(s)	701, 1766, 2090, 2125, 2207, 2215
PflMI	CCANNNNNTGG	3 cut(s)	834, 1170, 1736
PfoI	TCCNGGA	1 cut(s)	675
PleI	GAGTC	3 cut(s)	922, 1020, 1903
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	3 cut(s)	922, 1020, 1903
Ppu21I	YACGTR	2 cut(s)	536, 1721
PpuMI	RGGWCCY	1 cut(s)	964
PscI	ACATGT	2 cut(s)	1461, 2190
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	2248
Psp124BI	GAGCTC	2 cut(s)	158, 248
Psp5II	RGGWCCY	1 cut(s)	964
Psp6I	CCWGG	4 cut(s)	117, 600, 1455, 2073
PspEI	GGTNACC	1 cut(s)	1430
PspFI	CCCAGC	4 cut(s)	387, 502, 1070, 1323
PspGI	CCWGG	4 cut(s)	117, 600, 1455, 2073
PspN4I	GGNNCC	5 cut(s)	238, 379, 674, 826, 966
PspPI	GGNCC	6 cut(s)	188, 353, 410, 556, 656, 964
PspPPI	RGGWCCY	1 cut(s)	964
PstI	CTGCAG	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	4 cut(s)	318, 1103, 1775, 2153
RsaNI	GTAC	4 cut(s)	317, 1102, 1774, 2152
RseI	CAYNNNNRTG	3 cut(s)	616, 1254, 1671
SacI	GAGCTC	2 cut(s)	158, 248
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	6 cut(s)	125, 267, 594, 1913, 2156, 2168
Sau3AI	GATC	8 cut(s)	370, 538, 775, 784, 880, 1219, 1582, 1624
Sau96I	GGNCC	6 cut(s)	188, 353, 410, 556, 656, 964
ScaI	AGTACT	1 cut(s)	2153
SchI	GAGTC	3 cut(s)	922, 1021, 1904
ScrFI	CCNGG	9 cut(s)	48, 119, 176, 201, 234, 602, 677, 1457, 2075
SduI	GDGCHC	7 cut(s)	53, 158, 248, 802, 1518, 1615, 2116
SfaNI	GCATC	5 cut(s)	558, 848, 1596, 1819, 1978
SfcI	CTRYAG	2 cut(s)	735, 876
SfoI	GGCGCC	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	964
SmiMI	CAYNNNNRTG	3 cut(s)	616, 1254, 1671
SmlI	CTYRAG	2 cut(s)	1517, 2155
SmoI	CTYRAG	2 cut(s)	1517, 2155
SnaBI	TACGTA	1 cut(s)	1721
Sse9I	AATT	9 cut(s)	262, 755, 845, 971, 1117, 1235, 1271, 1676, 2160
SsiI	CCGC	6 cut(s)	27, 108, 375, 381, 1109, 1925
SspDI	GGCGCC	1 cut(s)	377
SspI	AATATT	3 cut(s)	1299, 1703, 1995
SspMI	CTAG	6 cut(s)	626, 683, 1637, 2015, 2181, 2219
SstI	GAGCTC	2 cut(s)	158, 248
StyD4I	CCNGG	9 cut(s)	46, 117, 174, 199, 232, 600, 675, 1455, 2073
StyI	CCWWGG	1 cut(s)	1654
TaaI	ACNGT	6 cut(s)	638, 650, 861, 1310, 1973, 2144
TaiI	ACGT	5 cut(s)	538, 1061, 1723, 1839, 2101
TaqI	TCGA	2 cut(s)	849, 2110
TasI	AATT	9 cut(s)	262, 755, 845, 971, 1117, 1235, 1271, 1676, 2160
TatI	WGTACW	3 cut(s)	1101, 1773, 2151
TauI	GCSGC	3 cut(s)	378, 383, 1927
TfiI	GAWTC	6 cut(s)	701, 1766, 2090, 2125, 2207, 2215
Tru1I	TTAA	6 cut(s)	125, 267, 594, 1913, 2156, 2168
Tru9I	TTAA	6 cut(s)	125, 267, 594, 1913, 2156, 2168
TscAI	CASTG	4 cut(s)	504, 1229, 1497, 1978
TseFI	GTSAC	6 cut(s)	19, 518, 748, 1430, 1818, 2186
Tsp45I	GTSAC	6 cut(s)	19, 518, 748, 1430, 1818, 2186
TspDTI	ATGAA	4 cut(s)	1430, 1689, 1818, 2138
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	4 cut(s)	504, 1229, 1497, 1978
Van91I	CCANNNNNTGG	3 cut(s)	834, 1170, 1736
Vha464I	CTTAAG	1 cut(s)	2155
VneI	GTGCAC	1 cut(s)	1611
VpaK11BI	GGWCC	1 cut(s)	964
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	5 cut(s)	755, 845, 971, 1271, 2160
XbaI	TCTAGA	2 cut(s)	1636, 2218
XceI	RCATGY	6 cut(s)	229, 1253, 1465, 1568, 2083, 2194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1375
XmnI	GAANNNNTTC	1 cut(s)	1644
XspI	CTAG	6 cut(s)	626, 683, 1637, 2015, 2181, 2219
ZrmI	AGTACT	1 cut(s)	2153
Zsp2I	ATGCAT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.