Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Reverse (-)

80838742 .. 80847288

Gene Structure 8547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG520500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGGCGATGCGTGAGCTTGTCACCGGCGGAGCAGCCTGCGCCGTTCCGGGCTCATCTTCGTCCTCCAATCCCTTCGGCAATCTCGCCAACGCTCTTCTCAACTCCTCCGCCAAAGGCCAGGACTTAAAGGAGCTGCCTTCTTCGCTGCCCACGAGCTCCGAGGCTCAGTTTTACCCGGTGGCGCATGGCCCACAGCTGCCGGGGTCGGAGTTTGACCAGCCCTACATGCAACCCGGAACCCAGAGCTCAGACTTTCTTCGCAATTTTAACTCTGTTGGTGGTGGCAATGGACTGCTTGAAAGTGCGTGGGATGAGGTACAAGGCTCTCAGCCTCCTCCTATGCACGGCCCTCAGGTTTTGTATGATCGCGGCGTCGCTGCTCAGCTTCAACCCACTTTGGATGGGCCACCACAGAGAGTGCTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGCCGTGGTGGGATACCTTTCCGTCCTACTCAACTTCCAGTGTTGGGATTGTCTGCTGGTGACAAGCAATGCATACGTGATCGCAGCAGCATCATGGCCCGACACTTTTTTGCAGATAAGAGCGAGGATTTTATTAATGGCCAGGTAAACGCACTTCTATGCTCGCTAGATATTGACGGTGAAGCCAACAGTAAAGGGCCTCTCCCTGCAAGGTTCCGGGAACTAGAGGGTTATTGGAACGAATCCCAAGCTATCCAGAAACCTGGTGCTCATGCTACAGATGGGTGGGTCACAGAATTTAGCCAACACAGAGTAGATCGTGGTGATCCTAATGTGTGGGCTCACTCATTTGAGCAACAACATGGTGCCAATGGTTGGGCATCTGAATTCGAGCAGGAACAGTCTCAGATGATGTCTGCAGATCATATGAGAGGTGGAAATATGGCAAGCTTAGCTGCAATGGAGCAGACTCGTATGCTTGCTAATACATTAGCACAGAATGAGGACCCAAAATTTCAGAAGTCAAGGTTTCTCCAGTTTGTATCAAAGATGAGTCGTGGTGAACTTATTATTGATGATAATCAAGTCAAGCAAGCCACGTCATCTACTGCTGGGGATTGGGCAGGAGAATATCAACAGCAGTACAATGCGGGTTCTAATTGGGCTAACGAATATCAGCATGGGGAGGTGGAGATATCTCGTGCCAATCAATGGGCAAATGAGTTTGGTTCTGAACAAGAGCAACATGGGTCAGTTGATGATCAGTGGGTCAATCAATTCTCTAAGTTGCATGTTGATGACTGGGCAGAGGAATTTGGAAATCAGGTTGGTGAAGGAATATTGGGGGACAGTTCTGCTGATAGCTGGGCTAACGCATATGATGAGTTCCTAAATGAGCAAGTAGCTTCCAAGCAGCGATTGGATAGTTCAAGGGGCGTCTATGTCTTTTCTGATATGAACCCTTATGTTGGTCACCCAAACCCACTGAAAGAAGGCCAGGACATGTTCCATAAAGGTCTTTTGAGTGAAGCAGTGCTTGCTTTGGAAGCTGAAGTGCTCAAGAACCCTGACAATGCTGAAGGTTGGAGGCTACTTGGAATAGCACATGCAGAAAATGATGATGATCAACAGGCTATTGCAGCCATGATGCGTGCACAGGAGGCTGATCCAACTAATCTAGAAGTGCTTCTTGCCCTTGGAGTGAGCCATACTAATGAATTGGAGCAGTCGGCTGCTTTGAAATATTTATATGGATGGCTACGTAATCACCCAAAGTATGGAGTGCTTGCGCGACCAGAGTTGTCAGATTCTTTGTACTATGCTGATGTTGCAAGAACTTTCAATGAAGCTGCTCAAATGTCACCTGAGGATGCTGACGTGCATATAGTTCTTGGTGTCCTCTACAACTTGTCAAGAGAATATGACAAAGCCATTGAGTCCTTCAGGACAGCTTTAAAACTGAAGCCGCAGGATTACTCTCTTTGGAACAAGCTTGGAGCAACACAAGCAAACAGTGTTCAGAGTGCTGATGCAATATTGGCTTATCAACAGGCGCTAGATTTGAAGCCCAACTATGTTCGTGCATGGGCTAATATGGGTATCAGCTATGCCAACCAGGGCATGTATGAGGATTCCATACGTTACTATGTTCGAGCACTTACCATGAATCCAAAGGCAGATAACGGTTGGCAGTACTTAAGAATTTCTTTAAGTTGTGCTTCTAGGAGTGACATGTTGGAAGCTTGTGATTCTCGGAATCTAGACATTCTCCTGAAGGAGTTTCCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

747

Amino Acids

82.66

Weight (kDa)

4.77

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CcmH_CycH	PF23914	492 - 550	1e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_CcmH_CycH	PF23914	603 - 712	2.5e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_1	PF00515	609 - 642	3.6e-06	Tetratricopeptide repeat
TPR_11	PF13414	661 - 691	9.9e-07	TPR repeat
TPR_1	PF00515	678 - 709	8e-08	Tetratricopeptide repeat
TPR_2	PF07719	678 - 709	7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2242
AccB1I	GGYRCC	1 cut(s)	818
AccB7I	CCANNNNNTGG	3 cut(s)	828, 1164, 1730
AccII	CGCG	2 cut(s)	369, 1744
AciI	CCGC	5 cut(s)	27, 108, 369, 1103, 1919
AclWI	GGATC	2 cut(s)	773, 1613
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	5 cut(s)	749, 839, 965, 1265, 2154
AcuI	CTGAAG	4 cut(s)	1524, 1551, 1879, 1934
AcyI	GRCGYC	2 cut(s)	372, 1389
AfaI	GTAC	4 cut(s)	318, 1097, 1769, 2147
AfiI	CCNNNNNNNGG	6 cut(s)	344, 497, 828, 1164, 1421, 1730
AflII	CTTAAG	1 cut(s)	2149
AflIII	ACRYGT	2 cut(s)	1455, 2184
AgsI	TTSAA	7 cut(s)	299, 389, 449, 1383, 1693, 1795, 2017
AjiI	CACGTC	2 cut(s)	1053, 1831
AjnI	CCWGG	5 cut(s)	117, 594, 715, 1449, 2067
Alw21I	GWGCWC	6 cut(s)	158, 248, 724, 1512, 1609, 2110
Alw26I	GTCTC	1 cut(s)	861
Alw44I	GTGCAC	1 cut(s)	1605
AlwI	GGATC	2 cut(s)	773, 1613
AoxI	GGCC	8 cut(s)	115, 187, 346, 404, 549, 592, 650, 1447
ApaLI	GTGCAC	1 cut(s)	1605
ApoI	RAATTY	5 cut(s)	749, 839, 965, 1265, 2154
AseI	ATTAAT	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	1638
AspLEI	GCGC	4 cut(s)	41, 184, 1744, 2008
AspS9I	GGNCC	6 cut(s)	188, 347, 404, 550, 650, 958
AsuC2I	CCSGG	5 cut(s)	48, 176, 201, 234, 671
AsuHPI	GGTGA	9 cut(s)	13, 524, 644, 788, 1025, 1295, 1418, 1712, 1806
AvaII	GGWCC	1 cut(s)	958
AxyI	CCTNAGG	2 cut(s)	351, 1818
BaeGI	GKGCMC	1 cut(s)	1609
BalI	TGGCCA	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	4 cut(s)	53, 158, 248, 796
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BauI	CACGAG	2 cut(s)	151, 1152
Bbv12I	GWGCWC	6 cut(s)	158, 248, 724, 1512, 1609, 2110
BccI	CCATC	3 cut(s)	395, 728, 1701
BceAI	ACGGC	3 cut(s)	26, 361, 441
BciT130I	CCWGG	5 cut(s)	119, 596, 717, 1451, 2069
BciVI	GTATCC	1 cut(s)	459
BclI	TGATCA	2 cut(s)	1213, 1576
BcnI	CCSGG	5 cut(s)	48, 176, 201, 234, 671
BcoDI	GTCTC	1 cut(s)	861
BfaI	CTAG	6 cut(s)	620, 677, 1631, 2009, 2175, 2213
BfmI	CTRYAG	2 cut(s)	729, 870
BfoI	RGCGCY	1 cut(s)	2009
BfrI	CTTAAG	1 cut(s)	2149
BfuI	GTATCC	1 cut(s)	459
BlpI	GCTNAGC	2 cut(s)	381, 904
BmcAI	AGTACT	1 cut(s)	2147
Bme18I	GGWCC	1 cut(s)	958
BmgBI	CACGTC	2 cut(s)	1053, 1831
BmgT120I	GGNCC	6 cut(s)	188, 347, 404, 550, 650, 958
BmiI	GGNNCC	4 cut(s)	238, 668, 820, 960
BmrI	ACTGGG	1 cut(s)	1264
BmsI	GCATC	5 cut(s)	552, 842, 1590, 1813, 1972
BmuI	ACTGGG	1 cut(s)	1264
BpmI	CTGGAG	1 cut(s)	971
Bpu1102I	GCTNAGC	2 cut(s)	381, 904
BpuEI	CTTGAG	1 cut(s)	1496
BpuMI	CCSGG	5 cut(s)	48, 176, 201, 234, 671
BsaAI	YACGTR	2 cut(s)	530, 1715
BsaBI	GATNNNNATC	2 cut(s)	1032, 1575
BsaHI	GRCGYC	2 cut(s)	372, 1389
BsaJI	CCNNGG	5 cut(s)	159, 200, 457, 1648, 2068
Bsc4I	CCNNNNNNNGG	6 cut(s)	344, 497, 828, 1164, 1421, 1730
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	3 cut(s)	491, 988, 1259
Bse21I	CCTNAGG	2 cut(s)	351, 1818
Bse3DI	GCAATG	3 cut(s)	292, 527, 918
Bse8I	GATNNNNATC	2 cut(s)	1032, 1575
BseBI	CCWGG	5 cut(s)	119, 596, 717, 1451, 2069
BseDI	CCNNGG	5 cut(s)	159, 200, 457, 1648, 2068
BseGI	GGATG	4 cut(s)	316, 406, 1712, 1828
BseJI	GATNNNNATC	2 cut(s)	1032, 1575
BseLI	CCNNNNNNNGG	6 cut(s)	344, 497, 828, 1164, 1421, 1730
BseMI	GCAATG	3 cut(s)	292, 527, 918
BseMII	CTCAG	7 cut(s)	179, 261, 341, 365, 395, 872, 1809
BseNI	ACTGG	3 cut(s)	491, 988, 1259
BseRI	GAGGAG	2 cut(s)	94, 324
BseSI	GKGCMC	1 cut(s)	1609
BseYI	CCCAGC	2 cut(s)	1064, 1317
Bsh1236I	CGCG	2 cut(s)	369, 1744
BshFI	GGCC	8 cut(s)	117, 189, 348, 406, 551, 594, 652, 1449
BshNI	GGYRCC	1 cut(s)	818
BsiHKAI	GWGCWC	6 cut(s)	158, 248, 724, 1512, 1609, 2110
BsiSI	CCGG	6 cut(s)	24, 47, 176, 200, 234, 670
BslFI	GGGAC	1 cut(s)	1313
BslI	CCNNNNNNNGG	6 cut(s)	344, 497, 828, 1164, 1421, 1730
BsmAI	GTCTC	1 cut(s)	861
BsmFI	GGGAC	1 cut(s)	1313
BsnI	GGCC	8 cut(s)	117, 189, 348, 406, 551, 594, 652, 1449
Bsp1286I	GDGCHC	8 cut(s)	53, 158, 248, 724, 796, 1512, 1609, 2110
Bsp143I	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
Bsp1720I	GCTNAGC	2 cut(s)	381, 904
BspACI	CCGC	5 cut(s)	27, 108, 369, 1103, 1919
BspANI	GGCC	8 cut(s)	117, 189, 348, 406, 551, 594, 652, 1449
BspCNI	CTCAG	7 cut(s)	178, 260, 340, 364, 394, 871, 1810
BspFNI	CGCG	2 cut(s)	369, 1744
BspLI	GGNNCC	4 cut(s)	238, 668, 820, 960
BspMAI	CTGCAG	1 cut(s)	874
BspPI	GGATC	2 cut(s)	773, 1613
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	818
BspTI	CTTAAG	1 cut(s)	2149
BsrDI	GCAATG	3 cut(s)	292, 527, 918
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	491, 988, 1259
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	5 cut(s)	159, 200, 457, 1648, 2068
BssMI	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
BssNI	GRCGYC	2 cut(s)	372, 1389
BssSI	CACGAG	2 cut(s)	151, 1152
BssT1I	CCWWGG	1 cut(s)	1648
Bst2BI	CACGAG	2 cut(s)	151, 1152
Bst2UI	CCWGG	5 cut(s)	119, 596, 717, 1451, 2069
Bst4CI	ACNGT	6 cut(s)	632, 644, 855, 1304, 1967, 2138
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	372, 1389
BstAFI	CTTAAG	1 cut(s)	2149
BstAPI	GCANNNNNTGC	1 cut(s)	1490
BstBAI	YACGTR	2 cut(s)	530, 1715
BstC8I	GCNNGC	8 cut(s)	37, 617, 901, 933, 1047, 1491, 1605, 1740
BstDEI	CTNAG	9 cut(s)	165, 247, 327, 351, 381, 858, 904, 1236, 1818
BstDSI	CCRYGG	1 cut(s)	457
BstEII	GGTNACC	1 cut(s)	1424
BstF5I	GGATG	4 cut(s)	316, 406, 1712, 1828
BstFNI	CGCG	2 cut(s)	369, 1744
BstH2I	RGCGCY	1 cut(s)	2009
BstHHI	GCGC	4 cut(s)	41, 184, 1744, 2008
BstKTI	GATC	8 cut(s)	367, 535, 772, 781, 877, 1216, 1579, 1621
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
BstNI	CCWGG	5 cut(s)	119, 596, 717, 1451, 2069
BstNSI	RCATGY	6 cut(s)	229, 1247, 1459, 1562, 2077, 2188
BstPI	GGTNACC	1 cut(s)	1424
BstSFI	CTRYAG	2 cut(s)	729, 870
BstSLI	GKGCMC	1 cut(s)	1609
BstSNI	TACGTA	1 cut(s)	1715
BstUI	CGCG	2 cut(s)	369, 1744
BstXI	CCANNNNNNTGG	1 cut(s)	716
Bsu36I	CCTNAGG	2 cut(s)	351, 1818
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	8 cut(s)	117, 189, 348, 406, 551, 594, 652, 1449
BtgI	CCRYGG	1 cut(s)	457
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	2 cut(s)	1053, 1831
BtsCI	GGATG	4 cut(s)	316, 406, 1712, 1828
BtsI	GCAGTG	1 cut(s)	1491
BtsIMutI	CAGTG	5 cut(s)	498, 1223, 1436, 1491, 1972
Cac8I	GCNNGC	8 cut(s)	37, 617, 901, 933, 1047, 1491, 1605, 1740
CfoI	GCGC	4 cut(s)	41, 184, 1744, 2008
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	6 cut(s)	188, 347, 404, 550, 650, 958
CseI	GACGC	2 cut(s)	361, 1378
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	4 cut(s)	317, 1096, 1768, 2146
CviQI	GTAC	4 cut(s)	317, 1096, 1768, 2146
DdeI	CTNAG	9 cut(s)	165, 247, 327, 351, 381, 858, 904, 1236, 1818
DpnI	GATC	8 cut(s)	366, 534, 771, 780, 876, 1215, 1578, 1620
DpnII	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
DraI	TTTAAA	1 cut(s)	1908
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	2 cut(s)	42, 97
Ecl136II	GAGCTC	2 cut(s)	156, 246
Eco105I	TACGTA	1 cut(s)	1715
Eco130I	CCWWGG	1 cut(s)	1648
Eco24I	GRGCYC	4 cut(s)	53, 158, 248, 796
Eco32I	GATATC	1 cut(s)	1149
Eco47I	GGWCC	1 cut(s)	958
Eco53kI	GAGCTC	2 cut(s)	156, 246
Eco57I	CTGAAG	4 cut(s)	1524, 1551, 1879, 1934
Eco81I	CCTNAGG	2 cut(s)	351, 1818
Eco91I	GGTNACC	1 cut(s)	1424
EcoICRI	GAGCTC	2 cut(s)	156, 246
EcoO109I	RGGNCCY	2 cut(s)	650, 958
EcoO65I	GGTNACC	1 cut(s)	1424
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	5 cut(s)	117, 594, 715, 1449, 2067
EcoRV	GATATC	1 cut(s)	1149
EcoT14I	CCWWGG	1 cut(s)	1648
EcoT22I	ATGCAT	1 cut(s)	527
EcoT38I	GRGCYC	4 cut(s)	53, 158, 248, 796
ErhI	CCWWGG	1 cut(s)	1648
FalI	AAGNNNNNCTT	8 cut(s)	1473, 1505, 1626, 1658, 2143, 2175, 2155, 2187
FaqI	GGGAC	1 cut(s)	1313
FauI	CCCGC	1 cut(s)	1096
FauNDI	CATATG	2 cut(s)	879, 1330
FbaI	TGATCA	2 cut(s)	1213, 1576
FokI	GGATG	4 cut(s)	323, 413, 1719, 1835
FriOI	GRGCYC	4 cut(s)	53, 158, 248, 796
FspBI	CTAG	6 cut(s)	620, 677, 1631, 2009, 2175, 2213
GlaI	GCGC	4 cut(s)	40, 183, 1743, 2007
GsaI	CCCAGC	2 cut(s)	1068, 1321
GsuI	CTGGAG	1 cut(s)	971
HaeII	RGCGCY	1 cut(s)	2009
HaeIII	GGCC	8 cut(s)	117, 189, 348, 406, 551, 594, 652, 1449
HapII	CCGG	6 cut(s)	24, 47, 176, 200, 234, 670
HgaI	GACGC	2 cut(s)	361, 1378
HhaI	GCGC	4 cut(s)	41, 184, 1744, 2008
Hin1I	GRCGYC	2 cut(s)	372, 1389
Hin6I	GCGC	4 cut(s)	39, 182, 1742, 2006
HinP1I	GCGC	4 cut(s)	39, 182, 1742, 2006
HindIII	AAGCTT	4 cut(s)	427, 901, 1943, 2193
HinfI	GANTC	9 cut(s)	695, 922, 1006, 1760, 1889, 2084, 2119, 2201, 2209
HpaII	CCGG	6 cut(s)	24, 47, 176, 200, 234, 670
HphI	GGTGA	9 cut(s)	13, 524, 644, 788, 1025, 1295, 1418, 1712, 1806
Hpy166II	GTNNAC	3 cut(s)	601, 1016, 1607
Hpy188III	TCNNGA	7 cut(s)	709, 1513, 1631, 1866, 1897, 2213, 2224
Hpy8I	GTNNAC	3 cut(s)	601, 1016, 1607
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	7 cut(s)	82, 147, 1280, 1439, 1526, 1903, 2221
HpyCH4III	ACNGT	6 cut(s)	632, 644, 855, 1304, 1967, 2138
HpyCH4IV	ACGT	5 cut(s)	529, 1052, 1714, 1830, 2092
HpyF3I	CTNAG	9 cut(s)	165, 247, 327, 351, 381, 858, 904, 1236, 1818
HpySE526I	ACGT	5 cut(s)	529, 1052, 1714, 1830, 2092
Hsp92I	GRCGYC	2 cut(s)	372, 1389
HspAI	GCGC	4 cut(s)	39, 182, 1742, 2006
Ksp22I	TGATCA	2 cut(s)	1213, 1576
Kzo9I	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	6 cut(s)	29, 130, 161, 916, 1675, 1949
LweI	GCATC	5 cut(s)	552, 842, 1590, 1813, 1972
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	6 cut(s)	620, 677, 1631, 2009, 2175, 2213
MaeII	ACGT	5 cut(s)	529, 1052, 1714, 1830, 2092
MaeIII	GTNAC	7 cut(s)	19, 512, 742, 1424, 1812, 2093, 2180
MalI	GATC	8 cut(s)	366, 534, 771, 780, 876, 1215, 1578, 1620
MboI	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
MboII	GAAGA	4 cut(s)	48, 86, 132, 248
MhlI	GDGCHC	8 cut(s)	53, 158, 248, 724, 796, 1512, 1609, 2110
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	9 cut(s)	262, 749, 839, 965, 1111, 1229, 1265, 1670, 2154
MluNI	TGGCCA	1 cut(s)	594
MlyI	GAGTC	3 cut(s)	916, 1015, 1898
MmeI	TCCRAC	4 cut(s)	186, 1517, 1646, 2169
Mox20I	TGGCCA	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	1638
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	6 cut(s)	125, 267, 588, 1907, 2150, 2162
MslI	CAYNNNNRTG	3 cut(s)	610, 1248, 1665
Msp20I	TGGCCA	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	196
MspCI	CTTAAG	1 cut(s)	2149
MspI	CCGG	6 cut(s)	24, 47, 176, 200, 234, 670
MvaI	CCWGG	5 cut(s)	119, 596, 717, 1451, 2069
MvnI	CGCG	2 cut(s)	369, 1744
NciI	CCSGG	5 cut(s)	48, 176, 201, 234, 671
NdeI	CATATG	2 cut(s)	879, 1330
NdeII	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
NlaIV	GGNNCC	4 cut(s)	238, 668, 820, 960
NmuCI	GTSAC	6 cut(s)	19, 512, 742, 1424, 1812, 2180
NsiI	ATGCAT	1 cut(s)	527
NspI	RCATGY	6 cut(s)	229, 1247, 1459, 1562, 2077, 2188
PciI	ACATGT	2 cut(s)	1455, 2184
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	1638
PfeI	GAWTC	6 cut(s)	695, 1760, 2084, 2119, 2201, 2209
PflMI	CCANNNNNTGG	3 cut(s)	828, 1164, 1730
PfoI	TCCNGGA	1 cut(s)	669
PleI	GAGTC	3 cut(s)	916, 1014, 1897
PpsI	GAGTC	3 cut(s)	916, 1014, 1897
Ppu21I	YACGTR	2 cut(s)	530, 1715
PpuMI	RGGWCCY	1 cut(s)	958
PscI	ACATGT	2 cut(s)	1455, 2184
PshBI	ATTAAT	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	2242
Psp124BI	GAGCTC	2 cut(s)	158, 248
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	5 cut(s)	117, 594, 715, 1449, 2067
PspEI	GGTNACC	1 cut(s)	1424
PspFI	CCCAGC	2 cut(s)	1064, 1317
PspGI	CCWGG	5 cut(s)	117, 594, 715, 1449, 2067
PspN4I	GGNNCC	4 cut(s)	238, 668, 820, 960
PspPI	GGNCC	6 cut(s)	188, 347, 404, 550, 650, 958
PspPPI	RGGWCCY	1 cut(s)	958
PstI	CTGCAG	1 cut(s)	874
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	4 cut(s)	318, 1097, 1769, 2147
RsaNI	GTAC	4 cut(s)	317, 1096, 1768, 2146
RseI	CAYNNNNRTG	3 cut(s)	610, 1248, 1665
SacI	GAGCTC	2 cut(s)	158, 248
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	6 cut(s)	125, 267, 588, 1907, 2150, 2162
Sau3AI	GATC	8 cut(s)	364, 532, 769, 778, 874, 1213, 1576, 1618
Sau96I	GGNCC	6 cut(s)	188, 347, 404, 550, 650, 958
ScaI	AGTACT	1 cut(s)	2147
SchI	GAGTC	3 cut(s)	916, 1015, 1898
SduI	GDGCHC	8 cut(s)	53, 158, 248, 724, 796, 1512, 1609, 2110
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	5 cut(s)	552, 842, 1590, 1813, 1972
SfcI	CTRYAG	2 cut(s)	729, 870
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	958
SmiMI	CAYNNNNRTG	3 cut(s)	610, 1248, 1665
SmlI	CTYRAG	2 cut(s)	1511, 2149
SmoI	CTYRAG	2 cut(s)	1511, 2149
SnaBI	TACGTA	1 cut(s)	1715
Sse9I	AATT	9 cut(s)	262, 749, 839, 965, 1111, 1229, 1265, 1670, 2154
SsiI	CCGC	5 cut(s)	27, 108, 369, 1103, 1919
SspI	AATATT	3 cut(s)	1293, 1697, 1989
SspMI	CTAG	6 cut(s)	620, 677, 1631, 2009, 2175, 2213
SstI	GAGCTC	2 cut(s)	158, 248
StyI	CCWWGG	1 cut(s)	1648
TaaI	ACNGT	6 cut(s)	632, 644, 855, 1304, 1967, 2138
TaiI	ACGT	5 cut(s)	532, 1055, 1717, 1833, 2095
TaqI	TCGA	2 cut(s)	843, 2104
TasI	AATT	9 cut(s)	262, 749, 839, 965, 1111, 1229, 1265, 1670, 2154
TatI	WGTACW	3 cut(s)	1095, 1767, 2145
TauI	GCSGC	2 cut(s)	372, 1921
TfiI	GAWTC	6 cut(s)	695, 1760, 2084, 2119, 2201, 2209
Tru1I	TTAA	6 cut(s)	125, 267, 588, 1907, 2150, 2162
Tru9I	TTAA	6 cut(s)	125, 267, 588, 1907, 2150, 2162
TscAI	CASTG	5 cut(s)	498, 1223, 1443, 1491, 1972
TseFI	GTSAC	6 cut(s)	19, 512, 742, 1424, 1812, 2180
Tsp45I	GTSAC	6 cut(s)	19, 512, 742, 1424, 1812, 2180
TspDTI	ATGAA	4 cut(s)	1424, 1683, 1812, 2132
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	5 cut(s)	498, 1223, 1443, 1491, 1972
Van91I	CCANNNNNTGG	3 cut(s)	828, 1164, 1730
Vha464I	CTTAAG	1 cut(s)	2149
VneI	GTGCAC	1 cut(s)	1605
VpaK11BI	GGWCC	1 cut(s)	958
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	5 cut(s)	749, 839, 965, 1265, 2154
XbaI	TCTAGA	2 cut(s)	1630, 2212
XceI	RCATGY	6 cut(s)	229, 1247, 1459, 1562, 2077, 2188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1369
XmnI	GAANNNNTTC	1 cut(s)	1638
XspI	CTAG	6 cut(s)	620, 677, 1631, 2009, 2175, 2213
ZrmI	AGTACT	1 cut(s)	2147
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.