Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Reverse (-)

83161784 .. 83169649

Gene Structure 7866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG487300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGCACGGCCCTCAGGTTTTGTATGATCGCGGCGCCGCTGCTCAGCTTCAACCCACCACTTTGGATGGGCCACCACAGAGAGTGCTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGCCGTGGTGGGATACCTTTCCGTGCTACTCAGCTTCCAGTGTTGGGATTGTCTGCTGGTGACAAGCAATGCATTCGTGATCGCAGCAGCATCATGGCCCGACACTTTTTTGCAGATAAGAGCGAGGATTTTATTAATGGCCAGGTAAACGCACTTCTATGCTCGCTAGATATTGACGGTGAAGCCACCAGTAAAGGGCCTCTCCCTGCAAGGTTCCGGGAACTAGAGGGTTATTGGAACGAATCCCAAGCTATCCAGAAACCTGGTGCTCATGCTACAGATGGGTGGGTCACAGAATTTAGCCAACACAGAGTAGATCGTGGTGATCCTAATGTGTGGGCTCACTCATTTGAGCAACAACATGGTGCCAATGGTTGGGCATCTGAATTCGAGCAGGAACAGTCTCAGATGATGTCTGCAGATCATATGAGAGGTGGAAATATGGCAAACTTAGCTGCAATGGAGCAGACTCGTATGCTTGCTAATACATTAGCACAGAATGAGGACCCAAAATTTCAGAAGTCAAGGTTTCTCCAGTTTGTATCAAAGATGAGTCGTGGTGAACTTATTATTGATGATAATCAAGTCAAGCAAGCCACGTCATCTACTGCTGGGGATTGGGCAGGAGAATATCAACAGCAGTACAATGCGGGTTCTAATTGGGCTAACGAATATCAGCATGGGGAGGTGGAGATATCTCGTGCCAATCAATGGGCAAATGAGTTTGGTTCTGAACAAGAGCAACATGGGTCAGTTGATGATCAGTGGGTCAATCAATTCTCTAAGTTGCATGTTGATGACTGGGCAGAAGAATTTGGAAATCAGGTTGGTGAAGGAATATTGGGGGACAGTTCTGCTGATAGCTGGGCTAACGCATATGATGAGTTCCTAAATGAGCAAGTAGCTTCCAAGCAGCGATTGGATAGTTCAAGGGGCGTCTATGTCTTTTCTGATATGAACCCTTATGTTGGTCACCCAAACCCACTGAAAGAAGGCCAGGACATGTTCCATAAAGGTCTTTTGAGTGAAGCAGTGCTTGCTTTGGAAGCTGAAGTGCTCAAGAACCCTGACAATGCTGAAGGTTGGAGGCTACTTGGAATAGCACATGCAGAAAATGATGATGATCAACAGGCTATTGCAGCCATGATGCGTGCACAGGAGGCTGATCCAACTAATCTAGAAGTGCTTCTTGCCCTTGGAGTGAGCCATACTAATGAATTGGAGCAGTCGGCTGCTTTGAAATATTTATATGGATGGCTACGTAATCACCCAAAGTATGGAGTGCTTGCGCGACCAGAGTTGTCAGATTCTTTGTACTATGCTGATGTTGCAAGAACTTTCAATGAAGCTGCTCAAATGTCACCTGAGGATGCTGACGTGCATATAGTTCTTGGTGTCCTCTACAACTTGTCAAGAGAATATGACAAAGCCATTGAGTCCTTCAGGACCGCTTTAAAACTGAAGCCGCAGGATTACTCTCTTTGGAACAAGCTTGGAGCAACACAAGCAAACAGTGTTCAGAGTGCTGATGCAATATTGGCTTATCAACAGGCGCTAGATTTGAAGCCCAACTATGTTCGTGCATGGGCTAATATGGGTATCAGCTATGCCAACCAGGGCATGTATGAGGATTCCATACGTTACTATGTTCGAGCACTTACCATGAATCCAAAGGCAGATAACGGTTGGCAGTACTTAAGAATTTCTTTAAGTTGTGCTTCTAGGAGTGACATGTTGGAAGCTTGTGATTCTCGGAATCTAGACATTCTCCTGAAGGAGTTTCCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

635

Amino Acids

71.07

Weight (kDa)

4.83

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CcmH_CycH	PF23914	380 - 438	8.1e-08	Cytochrome c-type biogenesis protein H TPR domain
TPR_CcmH_CycH	PF23914	491 - 600	2e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_1	PF00515	497 - 530	2.9e-06	Tetratricopeptide repeat
TPR_11	PF13414	549 - 579	8.2e-07	TPR repeat
TPR_1	PF00515	566 - 597	6.6e-08	Tetratricopeptide repeat
TPR_2	PF07719	566 - 597	5.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1906
AccB1I	GGYRCC	2 cut(s)	32, 482
AccB7I	CCANNNNNTGG	3 cut(s)	492, 828, 1394
AccII	CGCG	2 cut(s)	30, 1408
AciI	CCGC	5 cut(s)	30, 36, 767, 1566, 1583
AclWI	GGATC	2 cut(s)	437, 1277
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	5 cut(s)	413, 503, 629, 929, 1818
AcuI	CTGAAG	4 cut(s)	1188, 1215, 1543, 1598
AcyI	GRCGYC	2 cut(s)	33, 1053
AfaI	GTAC	3 cut(s)	761, 1433, 1811
AfiI	CCNNNNNNNGG	6 cut(s)	161, 312, 492, 828, 1085, 1394
AflII	CTTAAG	1 cut(s)	1813
AflIII	ACRYGT	2 cut(s)	1119, 1848
AgsI	TTSAA	6 cut(s)	50, 113, 1047, 1357, 1459, 1681
AjiI	CACGTC	2 cut(s)	717, 1495
AjnI	CCWGG	4 cut(s)	258, 379, 1113, 1731
Alw21I	GWGCWC	4 cut(s)	388, 1176, 1273, 1774
Alw26I	GTCTC	1 cut(s)	525
Alw44I	GTGCAC	1 cut(s)	1269
AlwI	GGATC	2 cut(s)	437, 1277
AoxI	GGCC	6 cut(s)	7, 68, 213, 256, 314, 1111
ApaLI	GTGCAC	1 cut(s)	1269
ApeKI	GCWGC	8 cut(s)	38, 201, 204, 572, 1030, 1256, 1349, 1466
ApoI	RAATTY	5 cut(s)	413, 503, 629, 929, 1818
AseI	ATTAAT	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	1302
AspLEI	GCGC	3 cut(s)	35, 1408, 1672
AspS9I	GGNCC	6 cut(s)	8, 68, 214, 314, 622, 1563
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	8 cut(s)	188, 308, 452, 689, 959, 1082, 1376, 1470
AvaII	GGWCC	2 cut(s)	622, 1563
AxyI	CCTNAGG	2 cut(s)	12, 1482
BaeGI	GKGCMC	1 cut(s)	1273
BalI	TGGCCA	1 cut(s)	258
BanI	GGYRCC	2 cut(s)	32, 482
BanII	GRGCYC	1 cut(s)	460
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BauI	CACGAG	1 cut(s)	816
Bbv12I	GWGCWC	4 cut(s)	388, 1176, 1273, 1774
BbvI	GCAGC	8 cut(s)	25, 213, 216, 559, 1042, 1268, 1336, 1453
BccI	CCATC	3 cut(s)	59, 392, 1365
BceAI	ACGGC	2 cut(s)	22, 105
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	4 cut(s)	260, 381, 1115, 1733
BciVI	GTATCC	1 cut(s)	123
BclI	TGATCA	2 cut(s)	877, 1240
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	6 cut(s)	284, 341, 1295, 1673, 1839, 1877
BfmI	CTRYAG	2 cut(s)	393, 534
BfoI	RGCGCY	2 cut(s)	36, 1673
BfrI	CTTAAG	1 cut(s)	1813
BfuI	GTATCC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	1811
Bme1390I	CCNGG	5 cut(s)	260, 335, 381, 1115, 1733
Bme18I	GGWCC	2 cut(s)	622, 1563
BmgBI	CACGTC	2 cut(s)	717, 1495
BmgT120I	GGNCC	6 cut(s)	8, 68, 214, 314, 622, 1563
BmiI	GGNNCC	4 cut(s)	34, 332, 484, 624
BmrFI	CCNGG	5 cut(s)	260, 335, 381, 1115, 1733
BmrI	ACTGGG	1 cut(s)	928
BmsI	GCATC	5 cut(s)	216, 506, 1254, 1477, 1636
BmuI	ACTGGG	1 cut(s)	928
BpmI	CTGGAG	1 cut(s)	635
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	1160
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	2 cut(s)	696, 1239
BsaHI	GRCGYC	2 cut(s)	33, 1053
BsaJI	CCNNGG	3 cut(s)	121, 1312, 1732
Bsc4I	CCNNNNNNNGG	6 cut(s)	161, 312, 492, 828, 1085, 1394
Bse1I	ACTGG	4 cut(s)	155, 306, 652, 923
Bse21I	CCTNAGG	2 cut(s)	12, 1482
Bse3DI	GCAATG	2 cut(s)	191, 582
Bse8I	GATNNNNATC	2 cut(s)	696, 1239
BseBI	CCWGG	4 cut(s)	260, 381, 1115, 1733
BseDI	CCNNGG	3 cut(s)	121, 1312, 1732
BseGI	GGATG	3 cut(s)	70, 1376, 1492
BseJI	GATNNNNATC	2 cut(s)	696, 1239
BseLI	CCNNNNNNNGG	6 cut(s)	161, 312, 492, 828, 1085, 1394
BseMI	GCAATG	2 cut(s)	191, 582
BseMII	CTCAG	5 cut(s)	26, 56, 161, 536, 1473
BseNI	ACTGG	4 cut(s)	155, 306, 652, 923
BseSI	GKGCMC	1 cut(s)	1273
BseXI	GCAGC	8 cut(s)	25, 213, 216, 559, 1042, 1268, 1336, 1453
BseYI	CCCAGC	2 cut(s)	728, 981
Bsh1236I	CGCG	2 cut(s)	30, 1408
BshFI	GGCC	6 cut(s)	9, 70, 215, 258, 316, 1113
BshNI	GGYRCC	2 cut(s)	32, 482
BsiHKAI	GWGCWC	4 cut(s)	388, 1176, 1273, 1774
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	6 cut(s)	161, 312, 492, 828, 1085, 1394
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	977
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	6 cut(s)	9, 70, 215, 258, 316, 1113
Bsp1286I	GDGCHC	5 cut(s)	388, 460, 1176, 1273, 1774
Bsp143I	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	5 cut(s)	30, 36, 767, 1566, 1583
BspANI	GGCC	6 cut(s)	9, 70, 215, 258, 316, 1113
BspCNI	CTCAG	5 cut(s)	25, 55, 160, 535, 1474
BspFNI	CGCG	2 cut(s)	30, 1408
BspLI	GGNNCC	4 cut(s)	34, 332, 484, 624
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	2 cut(s)	437, 1277
BspT107I	GGYRCC	2 cut(s)	32, 482
BspTI	CTTAAG	1 cut(s)	1813
BsrDI	GCAATG	2 cut(s)	191, 582
BsrI	ACTGG	4 cut(s)	155, 306, 652, 923
BssECI	CCNNGG	3 cut(s)	121, 1312, 1732
BssMI	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
BssNI	GRCGYC	2 cut(s)	33, 1053
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	1312
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	4 cut(s)	260, 381, 1115, 1733
Bst4CI	ACNGT	5 cut(s)	296, 519, 968, 1631, 1802
BstACI	GRCGYC	2 cut(s)	33, 1053
BstAFI	CTTAAG	1 cut(s)	1813
BstAPI	GCANNNNNTGC	1 cut(s)	1154
BstBAI	YACGTR	1 cut(s)	1379
BstC8I	GCNNGC	6 cut(s)	281, 597, 711, 1155, 1269, 1404
BstDEI	CTNAG	7 cut(s)	12, 42, 147, 522, 568, 900, 1482
BstDSI	CCRYGG	1 cut(s)	121
BstEII	GGTNACC	1 cut(s)	1088
BstF5I	GGATG	3 cut(s)	70, 1376, 1492
BstFNI	CGCG	2 cut(s)	30, 1408
BstH2I	RGCGCY	2 cut(s)	36, 1673
BstHHI	GCGC	3 cut(s)	35, 1408, 1672
BstKTI	GATC	8 cut(s)	28, 199, 436, 445, 541, 880, 1243, 1285
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
BstMWI	GCNNNNNNNGC	8 cut(s)	569, 1154, 1163, 1256, 1277, 1445, 1622, 1655
BstNI	CCWGG	4 cut(s)	260, 381, 1115, 1733
BstNSI	RCATGY	5 cut(s)	911, 1123, 1226, 1741, 1852
BstPI	GGTNACC	1 cut(s)	1088
BstSCI	CCNGG	5 cut(s)	258, 333, 379, 1113, 1731
BstSFI	CTRYAG	2 cut(s)	393, 534
BstSLI	GKGCMC	1 cut(s)	1273
BstSNI	TACGTA	1 cut(s)	1379
BstUI	CGCG	2 cut(s)	30, 1408
BstV1I	GCAGC	8 cut(s)	25, 213, 216, 559, 1042, 1268, 1336, 1453
BstXI	CCANNNNNNTGG	2 cut(s)	61, 380
Bsu36I	CCTNAGG	2 cut(s)	12, 1482
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	6 cut(s)	9, 70, 215, 258, 316, 1113
BtgI	CCRYGG	1 cut(s)	121
BtrI	CACGTC	2 cut(s)	717, 1495
BtsCI	GGATG	3 cut(s)	70, 1376, 1492
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	5 cut(s)	162, 887, 1100, 1155, 1636
Cac8I	GCNNGC	6 cut(s)	281, 597, 711, 1155, 1269, 1404
CfoI	GCGC	3 cut(s)	35, 1408, 1672
Cfr13I	GGNCC	6 cut(s)	8, 68, 214, 314, 622, 1563
CseI	GACGC	1 cut(s)	1042
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	760, 1432, 1810
CviQI	GTAC	3 cut(s)	760, 1432, 1810
DdeI	CTNAG	7 cut(s)	12, 42, 147, 522, 568, 900, 1482
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	8 cut(s)	27, 198, 435, 444, 540, 879, 1242, 1284
DpnII	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
DraI	TTTAAA	1 cut(s)	1572
EaeI	YGGCCR	1 cut(s)	256
Eco105I	TACGTA	1 cut(s)	1379
Eco130I	CCWWGG	1 cut(s)	1312
Eco24I	GRGCYC	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	813
Eco47I	GGWCC	2 cut(s)	622, 1563
Eco57I	CTGAAG	4 cut(s)	1188, 1215, 1543, 1598
Eco81I	CCTNAGG	2 cut(s)	12, 1482
Eco91I	GGTNACC	1 cut(s)	1088
EcoO109I	RGGNCCY	2 cut(s)	314, 622
EcoO65I	GGTNACC	1 cut(s)	1088
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	4 cut(s)	258, 379, 1113, 1731
EcoRV	GATATC	1 cut(s)	813
EcoT14I	CCWWGG	1 cut(s)	1312
EcoT22I	ATGCAT	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	460
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	1312
FalI	AAGNNNNNCTT	8 cut(s)	1137, 1169, 1290, 1322, 1807, 1839, 1819, 1851
FaqI	GGGAC	1 cut(s)	977
FauI	CCCGC	1 cut(s)	760
FauNDI	CATATG	2 cut(s)	543, 994
FbaI	TGATCA	2 cut(s)	877, 1240
FokI	GGATG	3 cut(s)	77, 1383, 1499
FriOI	GRGCYC	1 cut(s)	460
FspBI	CTAG	6 cut(s)	284, 341, 1295, 1673, 1839, 1877
GlaI	GCGC	3 cut(s)	34, 1407, 1671
GsaI	CCCAGC	2 cut(s)	732, 985
GsuI	CTGGAG	1 cut(s)	635
HaeII	RGCGCY	2 cut(s)	36, 1673
HaeIII	GGCC	6 cut(s)	9, 70, 215, 258, 316, 1113
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	1042
HhaI	GCGC	3 cut(s)	35, 1408, 1672
Hin1I	GRCGYC	2 cut(s)	33, 1053
Hin6I	GCGC	3 cut(s)	33, 1406, 1670
HinP1I	GCGC	3 cut(s)	33, 1406, 1670
HindIII	AAGCTT	3 cut(s)	91, 1607, 1857
HinfI	GANTC	9 cut(s)	359, 586, 670, 1424, 1553, 1748, 1783, 1865, 1873
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	8 cut(s)	188, 308, 452, 689, 959, 1082, 1376, 1470
Hpy166II	GTNNAC	3 cut(s)	265, 680, 1271
Hpy188I	TCNGA	8 cut(s)	502, 525, 636, 850, 1069, 1423, 1638, 1872
Hpy188III	TCNNGA	8 cut(s)	194, 373, 1177, 1295, 1530, 1561, 1877, 1888
Hpy8I	GTNNAC	3 cut(s)	265, 680, 1271
HpyAV	CCTTC	5 cut(s)	944, 1103, 1190, 1567, 1885
HpyCH4III	ACNGT	5 cut(s)	296, 519, 968, 1631, 1802
HpyCH4IV	ACGT	4 cut(s)	716, 1378, 1494, 1756
HpyF10VI	GCNNNNNNNGC	8 cut(s)	569, 1154, 1163, 1256, 1277, 1445, 1622, 1655
HpyF3I	CTNAG	7 cut(s)	12, 42, 147, 522, 568, 900, 1482
HpySE526I	ACGT	4 cut(s)	716, 1378, 1494, 1756
Hsp92I	GRCGYC	2 cut(s)	33, 1053
HspAI	GCGC	3 cut(s)	33, 1406, 1670
KasI	GGCGCC	1 cut(s)	32
Ksp22I	TGATCA	2 cut(s)	877, 1240
Kzo9I	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
LmnI	GCTCC	3 cut(s)	580, 1339, 1613
Lsp1109I	GCAGC	8 cut(s)	25, 213, 216, 559, 1042, 1268, 1336, 1453
LweI	GCATC	5 cut(s)	216, 506, 1254, 1477, 1636
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	6 cut(s)	284, 341, 1295, 1673, 1839, 1877
MaeII	ACGT	4 cut(s)	716, 1378, 1494, 1756
MaeIII	GTNAC	6 cut(s)	176, 406, 1088, 1476, 1757, 1844
MalI	GATC	8 cut(s)	27, 198, 435, 444, 540, 879, 1242, 1284
MboI	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
MboII	GAAGA	1 cut(s)	938
MhlI	GDGCHC	5 cut(s)	388, 460, 1176, 1273, 1774
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	8 cut(s)	413, 503, 629, 775, 893, 929, 1334, 1818
MluNI	TGGCCA	1 cut(s)	258
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	3 cut(s)	580, 679, 1562
MmeI	TCCRAC	3 cut(s)	1181, 1310, 1833
Mox20I	TGGCCA	1 cut(s)	258
Mph1103I	ATGCAT	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	1302
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	4 cut(s)	252, 1571, 1814, 1826
MslI	CAYNNNNRTG	3 cut(s)	274, 912, 1329
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	1813
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	5 cut(s)	260, 335, 381, 1115, 1733
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	4 cut(s)	260, 381, 1115, 1733
MvnI	CGCG	2 cut(s)	30, 1408
MwoI	GCNNNNNNNGC	8 cut(s)	569, 1154, 1163, 1256, 1277, 1445, 1622, 1655
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	335
NdeI	CATATG	2 cut(s)	543, 994
NdeII	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
NlaIV	GGNNCC	4 cut(s)	34, 332, 484, 624
NmuCI	GTSAC	5 cut(s)	176, 406, 1088, 1476, 1844
NsiI	ATGCAT	1 cut(s)	191
NspI	RCATGY	5 cut(s)	911, 1123, 1226, 1741, 1852
PciI	ACATGT	2 cut(s)	1119, 1848
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	1302
PfeI	GAWTC	6 cut(s)	359, 1424, 1748, 1783, 1865, 1873
PflMI	CCANNNNNTGG	3 cut(s)	492, 828, 1394
PfoI	TCCNGGA	1 cut(s)	333
PleI	GAGTC	3 cut(s)	580, 678, 1561
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	3 cut(s)	580, 678, 1561
Ppu21I	YACGTR	1 cut(s)	1379
PpuMI	RGGWCCY	1 cut(s)	622
PscI	ACATGT	2 cut(s)	1119, 1848
PshBI	ATTAAT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	1906
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	4 cut(s)	258, 379, 1113, 1731
PspEI	GGTNACC	1 cut(s)	1088
PspFI	CCCAGC	2 cut(s)	728, 981
PspGI	CCWGG	4 cut(s)	258, 379, 1113, 1731
PspN4I	GGNNCC	4 cut(s)	34, 332, 484, 624
PspPI	GGNCC	6 cut(s)	8, 68, 214, 314, 622, 1563
PspPPI	RGGWCCY	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	538
RsaI	GTAC	3 cut(s)	761, 1433, 1811
RsaNI	GTAC	3 cut(s)	760, 1432, 1810
RseI	CAYNNNNRTG	3 cut(s)	274, 912, 1329
SaqAI	TTAA	4 cut(s)	252, 1571, 1814, 1826
Sau3AI	GATC	8 cut(s)	25, 196, 433, 442, 538, 877, 1240, 1282
Sau96I	GGNCC	6 cut(s)	8, 68, 214, 314, 622, 1563
ScaI	AGTACT	1 cut(s)	1811
SchI	GAGTC	3 cut(s)	580, 679, 1562
ScrFI	CCNGG	5 cut(s)	260, 335, 381, 1115, 1733
SduI	GDGCHC	5 cut(s)	388, 460, 1176, 1273, 1774
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	5 cut(s)	216, 506, 1254, 1477, 1636
SfcI	CTRYAG	2 cut(s)	393, 534
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	2 cut(s)	622, 1563
SmiMI	CAYNNNNRTG	3 cut(s)	274, 912, 1329
SmlI	CTYRAG	2 cut(s)	1175, 1813
SmoI	CTYRAG	2 cut(s)	1175, 1813
SnaBI	TACGTA	1 cut(s)	1379
Sse9I	AATT	8 cut(s)	413, 503, 629, 775, 893, 929, 1334, 1818
SsiI	CCGC	5 cut(s)	30, 36, 767, 1566, 1583
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	3 cut(s)	957, 1361, 1653
SspMI	CTAG	6 cut(s)	284, 341, 1295, 1673, 1839, 1877
StyD4I	CCNGG	5 cut(s)	258, 333, 379, 1113, 1731
StyI	CCWWGG	1 cut(s)	1312
TaaI	ACNGT	5 cut(s)	296, 519, 968, 1631, 1802
TaiI	ACGT	4 cut(s)	719, 1381, 1497, 1759
TaqI	TCGA	2 cut(s)	507, 1768
TasI	AATT	8 cut(s)	413, 503, 629, 775, 893, 929, 1334, 1818
TatI	WGTACW	3 cut(s)	759, 1431, 1809
TauI	GCSGC	3 cut(s)	33, 38, 1585
TfiI	GAWTC	6 cut(s)	359, 1424, 1748, 1783, 1865, 1873
Tru1I	TTAA	4 cut(s)	252, 1571, 1814, 1826
Tru9I	TTAA	4 cut(s)	252, 1571, 1814, 1826
TscAI	CASTG	5 cut(s)	162, 887, 1107, 1155, 1636
TseFI	GTSAC	5 cut(s)	176, 406, 1088, 1476, 1844
TseI	GCWGC	8 cut(s)	38, 201, 204, 572, 1030, 1256, 1349, 1466
Tsp45I	GTSAC	5 cut(s)	176, 406, 1088, 1476, 1844
TspDTI	ATGAA	4 cut(s)	1088, 1347, 1476, 1796
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	5 cut(s)	162, 887, 1107, 1155, 1636
Van91I	CCANNNNNTGG	3 cut(s)	492, 828, 1394
Vha464I	CTTAAG	1 cut(s)	1813
VneI	GTGCAC	1 cut(s)	1269
VpaK11BI	GGWCC	2 cut(s)	622, 1563
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	5 cut(s)	413, 503, 629, 929, 1818
XbaI	TCTAGA	2 cut(s)	1294, 1876
XceI	RCATGY	5 cut(s)	911, 1123, 1226, 1741, 1852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	1302
XspI	CTAG	6 cut(s)	284, 341, 1295, 1673, 1839, 1877
ZrmI	AGTACT	1 cut(s)	1811
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.