Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007364

Physical Location & Seq

Genomic Coordinates Forward (+)

4110545 .. 4110871

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1051300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACCATTTCCTCATGGAAAAGACCATTCTGGGTCTCTTCGTCGCGGTGTTCGTCGCTATCGCCATTTCAAAACTCTGCGGCAAGAAATTCAAACTTCTGCCGGGTCCCATACCCGTACCTGTTTTCAGAAACTGGCTCCAGGTCGGCGACGACCTCAACCACCGTAATCTCACCGACCTCGCCAAGAAATTCGGCGACTGCTTCCTCCTCCACATGGGGCAGCGCAACCTCGTCGTGTCATCGTGTCGTCGCGGAGCTCGCCTAGGAGGTTCTCCACACCAAGGCAGTCGAATTCGGTTCGAGGAGCCGAAACGTAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009808 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0016710 GO:0019748 GO:0044237 GO:0044550 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 ko01220 map00130 map00360 map00940 map00941 map00945 map01100 map01110 map01220

Pfam Domains

Protein Families

p450

Protein Analysis

109

Amino Acids

12.2

Weight (kDa)

10.43

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 80	3.1e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30490
fragaria_vesca	FvH4_3g40570
malus_domestica	MD00G1221400.v1.1 MD03G1050900.v1.1 MD03G1051000.v1.1 MD03G1051100.v1.1 MD03G1051300.v1.1 MD11G1052900.v1.1
prunus_persica	Prupe.6G040400_v2.0.a1
pyrus_communis	pycom03g04020 pycom03g04030 pycom03g04050 pycom03g04060
rosa_chinensis	RchiOBHm_Chr5g0073351
rosa_laevigata	RLG00000036379
rosa_multiflora	Rmu_sc0001997.1_g000001 Rmu_sc0005684.1_g000008 Rmu_sc0006213.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007890
rosa_rugosa	Rorug05G0422900
rosa_samantha	Rh5AG479500 Rh5BG500700 Rh5CG523800 Rh5DG512500
rosa_wichuraiana	Rw5G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	47, 255
AciI	CCGC	3 cut(s)	47, 81, 255
AcsI	RAATTY	3 cut(s)	89, 191, 294
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	217, 284
AgsI	TTSAA	2 cut(s)	72, 94
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	3 cut(s)	89, 191, 294
AspA2I	CCTAGG	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	4, 107
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	4, 107
AvrII	CCTAGG	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	82, 224
BlnI	CCTAGG	1 cut(s)	265
BlsI	GCNGC	2 cut(s)	83, 225
Bme1390I	CCNGG	2 cut(s)	105, 143
Bme18I	GGWCC	2 cut(s)	4, 107
BmgT120I	GGNCC	2 cut(s)	4, 107
BmiI	GGNNCC	4 cut(s)	108, 109, 140, 309
BmrFI	CCNGG	2 cut(s)	105, 143
BpmI	CTGGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	265, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 284
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	265, 283
BseLI	CCNNNNNNNGG	2 cut(s)	217, 284
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	200, 320
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	47, 255
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	217, 284
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	262
BspACI	CCGC	3 cut(s)	47, 81, 255
BspFNI	CGCG	2 cut(s)	47, 255
BspLI	GGNNCC	4 cut(s)	108, 109, 140, 309
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	265, 283
BssT1I	CCWWGG	2 cut(s)	265, 283
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	262
BstFNI	CGCG	2 cut(s)	47, 255
BstHHI	GCGC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	103, 141
BstUI	CGCG	2 cut(s)	47, 255
BstV1I	GCAGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	4, 107
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	16, 217
CviJI	RGCY	3 cut(s)	139, 260, 310
CviKI_1	RGCY	3 cut(s)	139, 260, 310
CviQI	GTAC	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	265, 283
Eco24I	GRGCYC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	4, 107
Eco53kI	GAGCTC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	265, 283
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	265, 283
FaeI	CATG	2 cut(s)	19, 220
FaiI	YATR	3 cut(s)	17, 113, 218
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	15, 216
Fnu4HI	GCNGC	2 cut(s)	82, 224
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	82, 224
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	82, 224
GsuI	CTGGAG	1 cut(s)	125
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	19, 220
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	131
Hpy99I	CGWCG	5 cut(s)	47, 59, 155, 239, 255
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	19, 220
HspAI	GCGC	1 cut(s)	226
KflI	GGGWCCC	1 cut(s)	107
LmnI	GCTCC	3 cut(s)	144, 257, 307
LpnPI	CCDG	6 cut(s)	17, 117, 121, 128, 135, 155
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	316
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	89, 191, 294
MnlI	CCTC	8 cut(s)	23, 167, 191, 218, 221, 242, 263, 298
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	105, 143
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	47, 255
MwoI	GCNNNNNNNGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	105
NlaIII	CATG	2 cut(s)	19, 220
NlaIV	GGNNCC	4 cut(s)	108, 109, 140, 309
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	83, 225
PpuMI	RGGWCCY	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	4 cut(s)	108, 109, 140, 309
PspPI	GGNCC	2 cut(s)	4, 107
PspPPI	RGGWCCY	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	262
SatI	GCNGC	2 cut(s)	82, 224
Sau96I	GGNCC	2 cut(s)	4, 107
ScrFI	CCNGG	2 cut(s)	105, 143
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	8 cut(s)	124, 147, 159, 183, 234, 262, 274, 319
SinI	GGWCC	2 cut(s)	4, 107
Sse9I	AATT	3 cut(s)	89, 191, 294
SsiI	CCGC	3 cut(s)	47, 81, 255
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	103, 141
StyI	CCWWGG	2 cut(s)	265, 283
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	292, 303
TasI	AATT	3 cut(s)	89, 191, 294
TauI	GCSGC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	4, 107
XapI	RAATTY	3 cut(s)	89, 191, 294
XmaJI	CCTAGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.