Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006213.1

Orthogroup ID

OG0007364

Physical Location & Seq

Genomic Coordinates Reverse (-)

4376 .. 5744

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006213.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 596 bp

ccattgagactacactatggtcaatcgagtggggaatcgccgagcttgtgaaccaccccgaaatccagaagaagctgagggatgagctcgacactgtgctcggccgtggtgttcaagtcacagaaccagaaattcataagctgccgtaccttcaagccgtggtcaaggaaaccctaaggcttcgcatggcaatccccctccttgtcccacacatgaatctccatgatgctaagctcggaggctttgacattccggcagagagcaagatcttggtgaatgcttggtggctagcaaacaaccctgcacactggaagaagccagaggagtttaggcccgagaggtttttggaagaggagtccaaagttgaggccaatggcaatgacttcaggtaccttccgtttggtgtcggcaggaggagttgtcccggcattattttggcactgccgatccttgggattactttaggacgtttggtccagaactttgagctcttgcctcctccaggacagactcagcttgacacaacagagaaaggaggacagtttagtctgcacatcttgaaacattccaccatagttatgaagccaaggacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009808 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0016710 GO:0019748 GO:0044237 GO:0044550 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 ko01220 map00130 map00360 map00940 map00941 map00945 map01100 map01110 map01220

Pfam Domains

Protein Families

p450

Protein Analysis

197

Amino Acids

22.37

Weight (kDa)

6.73

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30490
fragaria_vesca	FvH4_3g40570
malus_domestica	MD00G1221400.v1.1 MD03G1050900.v1.1 MD03G1051000.v1.1 MD03G1051100.v1.1 MD03G1051300.v1.1 MD11G1052900.v1.1
prunus_persica	Prupe.6G040400_v2.0.a1
pyrus_communis	pycom03g04020 pycom03g04030 pycom03g04050 pycom03g04060
rosa_chinensis	RchiOBHm_Chr5g0073351
rosa_laevigata	RLG00000036379
rosa_multiflora	Rmu_sc0001997.1_g000001 Rmu_sc0005684.1_g000008 Rmu_sc0006213.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007890
rosa_rugosa	Rorug05G0422900
rosa_samantha	Rh5AG479500 Rh5BG500700 Rh5CG523800 Rh5DG512500
rosa_wichuraiana	Rw5G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	148, 391
AfiI	CCNNNNNNNGG	2 cut(s)	451, 502
AgsI	TTSAA	3 cut(s)	115, 154, 561
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	7 cut(s)	45, 75, 87, 141, 234, 489, 516
AluI	AGCT	7 cut(s)	45, 75, 87, 141, 234, 489, 516
Alw21I	GWGCWC	3 cut(s)	89, 101, 491
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	3 cut(s)	102, 331, 368
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	332, 474
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	285
AsuNHI	GCTAGC	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	474
AxyI	CCTNAGG	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	89, 491
Bbv12I	GWGCWC	3 cut(s)	89, 101, 491
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	128
BceAI	ACGGC	3 cut(s)	89, 129, 142
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	1 cut(s)	425
BfaI	CTAG	1 cut(s)	289
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	425, 503
Bme18I	GGWCC	1 cut(s)	474
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	332, 474
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	2 cut(s)	425, 503
BmsI	GCATC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	105, 158, 450, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 502
Bse1I	ACTGG	1 cut(s)	313
Bse21I	CCTNAGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	105, 158, 450, 586
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	451, 502
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	67, 526
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	4 cut(s)	337, 367, 429, 488
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	2 cut(s)	287, 535
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	104, 333, 370
BshNI	GGYRCC	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	3 cut(s)	89, 101, 491
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	253, 425
BslFI	GGGAC	2 cut(s)	190, 407
BslI	CCNNNNNNNGG	2 cut(s)	451, 502
BsmFI	GGGAC	2 cut(s)	190, 407
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	3 cut(s)	104, 333, 370
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	89, 101, 491
Bsp143I	GATC	2 cut(s)	266, 446
Bsp1720I	GCTNAGC	1 cut(s)	230
BspANI	GGCC	3 cut(s)	104, 333, 370
BspCNI	CTCAG	2 cut(s)	68, 525
BspLI	GGNNCC	1 cut(s)	391
BspOI	GCTAGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	105, 158, 450, 586
BssMI	GATC	2 cut(s)	266, 446
BssT1I	CCWWGG	2 cut(s)	450, 586
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	96, 542
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	4 cut(s)	76, 175, 230, 512
BstDSI	CCRYGG	2 cut(s)	105, 158
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	269, 449
BstMBI	GATC	2 cut(s)	266, 446
BstMCI	CGRYCG	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	423, 501
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	104, 333, 370
BtgI	CCRYGG	2 cut(s)	105, 158
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	3 cut(s)	92, 306, 439
Cac8I	GCNNGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	332, 474
Csp6I	GTAC	2 cut(s)	147, 390
CviAII	CATG	3 cut(s)	186, 213, 223
CviQI	GTAC	2 cut(s)	147, 390
DdeI	CTNAG	4 cut(s)	76, 175, 230, 512
DpnI	GATC	2 cut(s)	268, 448
DpnII	GATC	2 cut(s)	266, 446
DrdI	GACNNNNNNGTC	1 cut(s)	545
DriI	GACNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	1 cut(s)	102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	344
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	344
Ecl136II	GAGCTC	2 cut(s)	87, 489
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	450, 586
Eco24I	GRGCYC	2 cut(s)	89, 491
Eco47I	GGWCC	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	2 cut(s)	87, 489
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	334
EcoICRI	GAGCTC	2 cut(s)	87, 489
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	450, 586
EcoT38I	GRGCYC	2 cut(s)	89, 491
ErhI	CCWWGG	2 cut(s)	450, 586
FaeI	CATG	3 cut(s)	189, 216, 226
FaiI	YATR	8 cut(s)	18, 137, 187, 214, 224, 574, 580, 594
FaqI	GGGAC	2 cut(s)	190, 407
FatI	CATG	3 cut(s)	185, 212, 222
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	2 cut(s)	89, 491
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	289
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	104, 333, 370
HapII	CCGG	2 cut(s)	253, 425
Hin1II	CATG	3 cut(s)	189, 216, 226
HinfI	GANTC	4 cut(s)	35, 216, 355, 510
HpaII	CCGG	2 cut(s)	253, 425
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	66, 477, 558
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	160, 403
HpyCH4III	ACNGT	2 cut(s)	96, 542
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	304, 552
HpyF3I	CTNAG	4 cut(s)	76, 175, 230, 512
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	189, 216, 226
KpnI	GGTACC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	266, 446
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	289
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	268, 448
MboI	GATC	2 cut(s)	266, 446
MboII	GAAGA	3 cut(s)	81, 324, 361
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	3 cut(s)	89, 101, 491
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	364, 504
MslI	CAYNNNNRTG	1 cut(s)	577
MspI	CCGG	2 cut(s)	253, 425
MspR9I	CCNGG	2 cut(s)	425, 503
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	503
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	2 cut(s)	266, 446
NheI	GCTAGC	1 cut(s)	288
NlaIII	CATG	3 cut(s)	189, 216, 226
NlaIV	GGNNCC	1 cut(s)	391
NmeAIII	GCCGAG	2 cut(s)	66, 80
NmuCI	GTSAC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	35, 216
PfoI	TCCNGGA	1 cut(s)	501
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	363, 504
PpsI	GAGTC	2 cut(s)	363, 504
Psp124BI	GAGCTC	2 cut(s)	89, 491
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	332, 474
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	148, 391
RsaNI	GTAC	2 cut(s)	147, 390
RseI	CAYNNNNRTG	1 cut(s)	577
SacI	GAGCTC	2 cut(s)	89, 491
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	266, 446
Sau96I	GGNCC	2 cut(s)	332, 474
SchI	GAGTC	2 cut(s)	364, 504
ScrFI	CCNGG	2 cut(s)	425, 503
SduI	GDGCHC	3 cut(s)	89, 101, 491
SfaNI	GCATC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	577
Sse9I	AATT	1 cut(s)	131
SspMI	CTAG	1 cut(s)	289
SstI	GAGCTC	2 cut(s)	89, 491
StyD4I	CCNGG	2 cut(s)	423, 501
StyI	CCWWGG	2 cut(s)	450, 586
TaaI	ACNGT	2 cut(s)	96, 542
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	2 cut(s)	26, 89
TasI	AATT	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	35, 216
TscAI	CASTG	3 cut(s)	99, 313, 446
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	124, 229, 595
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	3 cut(s)	99, 313, 446
VpaK11BI	GGWCC	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	131
XspI	CTAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.