Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007364

Physical Location & Seq

Genomic Coordinates Forward (+)

3191135 .. 3191802

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGACTATTGAAAGCACTTTGTTGTCTATCGAGTGGGGGATCGCCGAGCTAGTGAACCACCCCGACAGCCAGAAGAAGTTGAGGGAAGAACTCGATACTGTCCTCGGCCGTGGAGTACAAATCACAGAGCCCGACATTCAGAAACTTCCCTACCTGCAAGCCGTGATCAAGGAGACTCTCCGCCTTCGCATGACAATTCCACTCCTTCTTCCCCACATGAACCTTAAGGACGCCAAGCTCAGTGGGTTTGACATCCCGGCGGGGAGCAAGATTTTGGTGAATGCTTGGTGGTTGGCGAACAACCCTGCCATGTGGAAGAAGCCGGAGGAGTTTAGGCCCGAGAGGTTTTTGGAGGAGGAGTCGAAGGTGGAGGCTAACGGGAACGACTTCAGGTATCTCCCGTTTGGTGTTGGGAGGAGAAGCTGTCCCGGTATTATCCTGGCCCTGCCAATCCTATGCATTACAATTGGACGTTTAGTTCAGAACTTCGAGCTTCTACCTCCGCCGGGACAGTCCAAGCTCGACACCTCGGAGAAATGCGGGCAGTTCAGCTTGCACATCCTGAAGCATTCCACCATTGTGATGAAGCCGACGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009808 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0016710 GO:0019748 GO:0044237 GO:0044550 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 ko01220 map00130 map00360 map00940 map00941 map00945 map01100 map01110 map01220

Pfam Domains

Protein Families

p450

Protein Analysis

200

Amino Acids

22.49

Weight (kDa)

7.73

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30490
fragaria_vesca	FvH4_3g40570
malus_domestica	MD00G1221400.v1.1 MD03G1050900.v1.1 MD03G1051000.v1.1 MD03G1051100.v1.1 MD03G1051300.v1.1 MD11G1052900.v1.1
prunus_persica	Prupe.6G040400_v2.0.a1
pyrus_communis	pycom03g04020 pycom03g04030 pycom03g04050 pycom03g04060
rosa_chinensis	RchiOBHm_Chr5g0073351
rosa_laevigata	RLG00000036379
rosa_multiflora	Rmu_sc0001997.1_g000001 Rmu_sc0005684.1_g000008 Rmu_sc0006213.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007890
rosa_rugosa	Rorug05G0422900
rosa_samantha	Rh5AG479500 Rh5BG500700 Rh5CG523800 Rh5DG512500
rosa_wichuraiana	Rw5G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AciI	CCGC	4 cut(s)	181, 260, 503, 540
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	373, 584
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	438
AleI	CACNNNNGTG	1 cut(s)	578
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
AluBI	AGCT	6 cut(s)	49, 238, 423, 493, 520, 552
AluI	AGCT	6 cut(s)	49, 238, 423, 493, 520, 552
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	106, 335, 441
Asp700I	GAANNNNTTC	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	336, 442
AsuC2I	CCSGG	3 cut(s)	257, 429, 507
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	132
BceAI	ACGGC	2 cut(s)	93, 146
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	3 cut(s)	257, 429, 507
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	50
BfrI	CTTAAG	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	162
Bme1390I	CCNGG	4 cut(s)	257, 429, 440, 507
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	336, 442
BmrFI	CCNGG	4 cut(s)	257, 429, 440, 507
BpuMI	CCSGG	3 cut(s)	257, 429, 507
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	103, 109, 528
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	3 cut(s)	103, 109, 528
BseGI	GGATG	2 cut(s)	252, 558
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	253
BseRI	GAGGAG	4 cut(s)	341, 368, 371, 430
BseX3I	CGGCCG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	108, 337, 443
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	257, 323, 429, 506
BslFI	GGGAC	2 cut(s)	411, 522
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	411, 522
BsmI	GAATGC	2 cut(s)	286, 568
BsnI	GGCC	3 cut(s)	108, 337, 443
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	39, 165
BspACI	CCGC	4 cut(s)	181, 260, 503, 540
BspANI	GGCC	3 cut(s)	108, 337, 443
BspCNI	CTCAG	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	224
BssECI	CCNNGG	3 cut(s)	103, 109, 528
BssMI	GATC	2 cut(s)	39, 165
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	100, 513
BstACI	GRCGYC	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	159, 542, 554
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	252, 558
BstKTI	GATC	2 cut(s)	42, 168
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	39, 165
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	4 cut(s)	255, 427, 438, 505
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	108, 337, 443
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	252, 558
BtsIMutI	CAGTG	1 cut(s)	247
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	159, 542, 554
Cfr13I	GGNCC	2 cut(s)	336, 442
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	3 cut(s)	190, 217, 310
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	41, 167
DpnII	GATC	2 cut(s)	39, 165
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
EciI	GGCGGA	2 cut(s)	170, 492
EclXI	CGGCCG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	132
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	373, 584
Eco88I	CYCGRG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	3 cut(s)	193, 220, 313
FaiI	YATR	5 cut(s)	191, 218, 311, 457, 598
FaqI	GGGAC	2 cut(s)	411, 522
FatI	CATG	3 cut(s)	189, 216, 309
FauI	CCCGC	2 cut(s)	253, 533
FbaI	TGATCA	1 cut(s)	165
FokI	GGATG	2 cut(s)	239, 545
FriOI	GRGCYC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	108, 337, 443
HapII	CCGG	4 cut(s)	257, 323, 429, 506
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	193, 220, 313
HinfI	GANTC	2 cut(s)	175, 359
HpaII	CCGG	4 cut(s)	257, 323, 429, 506
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	141, 483, 532
Hpy188III	TCNNGA	1 cut(s)	562
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	194, 215, 358
HpyCH4III	ACNGT	2 cut(s)	100, 513
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	157, 459, 556
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	193, 220, 313
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	39, 165
LmnI	GCTCC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	472
MalI	GATC	2 cut(s)	41, 167
MboI	GATC	2 cut(s)	39, 165
MboII	GAAGA	4 cut(s)	85, 98, 200, 328
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	195, 465
MlyI	GAGTC	2 cut(s)	169, 368
Mph1103I	ATGCAT	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	578, 581
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	4 cut(s)	257, 323, 429, 506
MspR9I	CCNGG	4 cut(s)	257, 429, 440, 507
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	2 cut(s)	286, 568
MvaI	CCWGG	1 cut(s)	440
NciI	CCSGG	3 cut(s)	257, 429, 507
NdeII	GATC	2 cut(s)	39, 165
NlaIII	CATG	3 cut(s)	193, 220, 313
NmeAIII	GCCGAG	2 cut(s)	70, 84
NsiI	ATGCAT	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	578
PctI	GAATGC	2 cut(s)	286, 568
PdmI	GAANNNNTTC	1 cut(s)	386
PleI	GAGTC	2 cut(s)	169, 367
PpsI	GAGTC	2 cut(s)	169, 367
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	336, 442
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	578, 581
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	39, 165
Sau96I	GGNCC	2 cut(s)	336, 442
SchI	GAGTC	2 cut(s)	169, 368
ScrFI	CCNGG	4 cut(s)	257, 429, 440, 507
SduI	GDGCHC	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	578, 581
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	195, 465
SsiI	CCGC	4 cut(s)	181, 260, 503, 540
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	4 cut(s)	255, 427, 438, 505
TaaI	ACNGT	2 cut(s)	100, 513
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	5 cut(s)	30, 93, 362, 489, 522
TasI	AATT	2 cut(s)	195, 465
TatI	WGTACW	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	233, 599
TspRI	CASTG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.