Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007364

Physical Location & Seq

Genomic Coordinates Forward (+)

58765248 .. 58766648

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0422900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATGAAGCAGCAGCTACAATCTCTTTTCTCACTCCCATTGCTATTCATCCTCCTCTCCCACTGCACCGGAATCTCAGCTCAAGGCCCAGCTGCAAGCCCAATGGCAGGTCCGATAGCCGATGCTCCAGCACCGCCGGGACCAACCAACGTCACCAAAATCCTTGAAAAATCCGGCGGCTTCGACCTCTTCATCCGCCTGTTGAAAACCACCCAAGTCGACGGCCAACTCTACAGCCAACTCAACAACTCCGACAGCAAATTGACCATCTTGGCCCCAACTGACTCTGCCTTCTCGAAACTCAAATCAGGGTCTCTCAACTCCCTCACCGACTCTCAGAAGGATCAGCTCTTGCAGTTCCATCTCATCCCAGATTTTCTCACCATGTCAAACTTCCAAACTCTCAGCAACCCGGTTCGAACCCAAGCCGGAGACCAGTTTGAGTTCCCGCTAAACATGACCACATCTGGAAACTCAGTGAACATTACCACTGGTCTTGTCAACACTTCAATTTCAGGCACTGTGTATACGGATAACCAACTGGCGATTTATCAGGTGGACAGTGTGCTACAGCCTTATGGGATTTTCGCTCCCAAGCCTCTGCCCCCTTCCCCAGCACCGGCACCGGAAAAGGCAAAGCCTAAAAAAAAGTCCGAAAGCCCAGTTGCCGCTGTGAAATCTGCTGCAGGGTCGGTAGTCTGTGATCTCTCCAGAAATGGGTTGGTCTCCATTGGAGTTGCTGTGGTGTTTGCAGCGGTAATGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009808 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0016710 GO:0019748 GO:0044237 GO:0044550 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 ko01220 map00130 map00360 map00940 map00941 map00945 map01100 map01110 map01220

Pfam Domains

Protein Families

p450

Protein Analysis

256

Amino Acids

27.07

Weight (kDa)

8.49

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	60 - 192	5.2e-21	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30490
fragaria_vesca	FvH4_3g40570
malus_domestica	MD00G1221400.v1.1 MD03G1050900.v1.1 MD03G1051000.v1.1 MD03G1051100.v1.1 MD03G1051300.v1.1 MD11G1052900.v1.1
prunus_persica	Prupe.6G040400_v2.0.a1
pyrus_communis	pycom03g04020 pycom03g04030 pycom03g04050 pycom03g04060
rosa_chinensis	RchiOBHm_Chr5g0073351
rosa_laevigata	RLG00000036379
rosa_multiflora	Rmu_sc0001997.1_g000001 Rmu_sc0005684.1_g000008 Rmu_sc0006213.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007890
rosa_rugosa	Rorug05G0422900
rosa_samantha	Rh5AG479500 Rh5BG500700 Rh5CG523800 Rh5DG512500
rosa_wichuraiana	Rw5G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	622
AccI	GTMKAC	2 cut(s)	219, 527
AciI	CCGC	6 cut(s)	134, 177, 196, 449, 669, 755
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	107, 619, 717
AgsI	TTSAA	3 cut(s)	167, 205, 510
AluBI	AGCT	4 cut(s)	16, 80, 92, 349
AluI	AGCT	4 cut(s)	16, 80, 92, 349
Alw26I	GTCTC	3 cut(s)	318, 426, 730
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	3 cut(s)	85, 223, 273
ApeKI	GCWGC	5 cut(s)	10, 13, 92, 683, 752
AspS9I	GGNCC	4 cut(s)	86, 110, 140, 274
AsuC2I	CCSGG	2 cut(s)	138, 413
AsuHPI	GGTGA	3 cut(s)	145, 319, 373
AsuII	TTCGAA	1 cut(s)	418
AvaII	GGWCC	2 cut(s)	110, 140
BanI	GGYRCC	1 cut(s)	622
BbvI	GCAGC	5 cut(s)	22, 25, 79, 670, 764
BccI	CCATC	2 cut(s)	275, 369
BceAI	ACGGC	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	138, 413
BcoDI	GTCTC	3 cut(s)	318, 426, 730
BfmI	CTRYAG	3 cut(s)	232, 569, 684
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	7 cut(s)	11, 14, 93, 178, 669, 684, 753
BlsI	GCNGC	7 cut(s)	12, 15, 94, 179, 670, 685, 754
Bme1390I	CCNGG	2 cut(s)	138, 413
Bme18I	GGWCC	2 cut(s)	110, 140
BmgT120I	GGNCC	4 cut(s)	86, 110, 140, 274
BmiI	GGNNCC	3 cut(s)	141, 276, 624
BmrFI	CCNGG	2 cut(s)	138, 413
BmrI	ACTGGG	1 cut(s)	656
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	656
BpmI	CTGGAG	2 cut(s)	111, 694
Bpu14I	TTCGAA	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	138, 413
BsaI	GGTCTC	3 cut(s)	318, 426, 730
BsaWI	WCCGGW	2 cut(s)	68, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 619, 717
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	4 cut(s)	436, 496, 546, 662
Bse3DI	GCAATG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	48, 192, 366
BseLI	CCNNNNNNNGG	3 cut(s)	107, 619, 717
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	4 cut(s)	90, 350, 418, 489
BseNI	ACTGG	4 cut(s)	436, 496, 546, 662
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	5 cut(s)	22, 25, 79, 670, 764
BseYI	CCCAGC	2 cut(s)	88, 613
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	87, 225, 275
BshNI	GGYRCC	1 cut(s)	622
BsiSI	CCGG	7 cut(s)	69, 137, 174, 413, 429, 620, 626
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	107, 619, 717
BsmAI	GTCTC	3 cut(s)	318, 426, 730
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	87, 225, 275
Bso31I	GGTCTC	3 cut(s)	318, 426, 730
Bsp119I	TTCGAA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	343, 703
BspACI	CCGC	6 cut(s)	134, 177, 196, 449, 669, 755
BspANI	GGCC	3 cut(s)	87, 225, 275
BspCNI	CTCAG	4 cut(s)	89, 349, 417, 488
BspLI	GGNNCC	3 cut(s)	141, 276, 624
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	3 cut(s)	318, 426, 730
BsrDI	GCAATG	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	619
BsrI	ACTGG	4 cut(s)	436, 496, 546, 662
BssAI	RCCGGY	1 cut(s)	619
BssMI	GATC	2 cut(s)	343, 703
BssNAI	GTATAC	1 cut(s)	528
Bst1107I	GTATAC	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	523, 563
Bst6I	CTCTTC	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	4 cut(s)	76, 336, 404, 475
BstF5I	GGATG	3 cut(s)	48, 192, 366
BstKTI	GATC	2 cut(s)	346, 706
BstMAI	GTCTC	3 cut(s)	318, 426, 730
BstMBI	GATC	2 cut(s)	343, 703
BstSCI	CCNGG	2 cut(s)	136, 411
BstSFI	CTRYAG	3 cut(s)	232, 569, 684
BstV1I	GCAGC	5 cut(s)	22, 25, 79, 670, 764
BstZ17I	GTATAC	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	87, 225, 275
BtsCI	GGATG	3 cut(s)	48, 192, 366
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	5 cut(s)	61, 483, 489, 519, 568
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	4 cut(s)	86, 110, 140, 274
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	2 cut(s)	385, 457
DdeI	CTNAG	4 cut(s)	76, 336, 404, 475
DpnI	GATC	2 cut(s)	345, 705
DpnII	GATC	2 cut(s)	343, 703
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	185
Eco31I	GGTCTC	3 cut(s)	318, 426, 730
Eco47I	GGWCC	2 cut(s)	110, 140
FaeI	CATG	2 cut(s)	388, 460
FaiI	YATR	4 cut(s)	386, 458, 528, 579
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	384, 456
FauI	CCCGC	1 cut(s)	456
FblI	GTMKAC	2 cut(s)	219, 527
Fnu4HI	GCNGC	7 cut(s)	11, 14, 93, 178, 669, 684, 753
FokI	GGATG	3 cut(s)	35, 179, 353
Fsp4HI	GCNGC	7 cut(s)	11, 14, 93, 178, 669, 684, 753
GluI	GCNGC	7 cut(s)	11, 14, 93, 178, 669, 684, 753
GsaI	CCCAGC	2 cut(s)	92, 617
GsuI	CTGGAG	2 cut(s)	111, 694
HaeIII	GGCC	3 cut(s)	87, 225, 275
HapII	CCGG	7 cut(s)	69, 137, 174, 413, 429, 620, 626
Hin1II	CATG	2 cut(s)	388, 460
HincII	GTYRAC	2 cut(s)	220, 502
HindII	GTYRAC	2 cut(s)	220, 502
HinfI	GANTC	3 cut(s)	72, 284, 332
HpaII	CCGG	7 cut(s)	69, 137, 174, 413, 429, 620, 626
HphI	GGTGA	3 cut(s)	145, 319, 373
Hpy166II	GTNNAC	5 cut(s)	220, 481, 502, 528, 559
Hpy188I	TCNGA	4 cut(s)	114, 253, 339, 655
Hpy188III	TCNNGA	3 cut(s)	295, 468, 711
Hpy8I	GTNNAC	5 cut(s)	220, 481, 502, 528, 559
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	301, 334, 618
HpyCH4III	ACNGT	2 cut(s)	523, 563
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	66, 95, 355, 686, 752
HpyF3I	CTNAG	4 cut(s)	76, 336, 404, 475
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	388, 460
Kzo9I	GATC	2 cut(s)	343, 703
LmnI	GCTCC	2 cut(s)	130, 595
Lsp1109I	GCAGC	5 cut(s)	22, 25, 79, 670, 764
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	345, 705
MboI	GATC	2 cut(s)	343, 703
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	2 cut(s)	260, 510
MlyI	GAGTC	2 cut(s)	278, 326
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	62, 65, 197, 335, 609
MspA1I	CMGCKG	3 cut(s)	92, 671, 755
MspI	CCGG	7 cut(s)	69, 137, 174, 413, 429, 620, 626
MspR9I	CCNGG	2 cut(s)	138, 413
NciI	CCSGG	2 cut(s)	138, 413
NdeII	GATC	2 cut(s)	343, 703
NlaIII	CATG	2 cut(s)	388, 460
NlaIV	GGNNCC	3 cut(s)	141, 276, 624
NmuCI	GTSAC	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	7 cut(s)	12, 15, 94, 179, 670, 685, 754
PleI	GAGTC	2 cut(s)	278, 326
PpsI	GAGTC	2 cut(s)	278, 326
PspFI	CCCAGC	2 cut(s)	88, 613
PspN4I	GGNNCC	3 cut(s)	141, 276, 624
PspPI	GGNCC	4 cut(s)	86, 110, 140, 274
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	7 cut(s)	11, 14, 93, 178, 669, 684, 753
Sau3AI	GATC	2 cut(s)	343, 703
Sau96I	GGNCC	4 cut(s)	86, 110, 140, 274
SchI	GAGTC	2 cut(s)	278, 326
ScrFI	CCNGG	2 cut(s)	138, 413
SetI	ASST	8 cut(s)	18, 82, 94, 112, 153, 189, 351, 558
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	3 cut(s)	232, 569, 684
SfuI	TTCGAA	1 cut(s)	418
SinI	GGWCC	2 cut(s)	110, 140
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	260, 510
SsiI	CCGC	6 cut(s)	134, 177, 196, 449, 669, 755
StyD4I	CCNGG	2 cut(s)	136, 411
TaaI	ACNGT	2 cut(s)	523, 563
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	183, 219, 296, 418
TasI	AATT	2 cut(s)	260, 510
TauI	GCSGC	2 cut(s)	180, 671
TfiI	GAWTC	1 cut(s)	72
TscAI	CASTG	5 cut(s)	68, 483, 496, 526, 568
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	5 cut(s)	10, 13, 92, 683, 752
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	20, 37, 181
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	5 cut(s)	68, 483, 496, 526, 568
VpaK11BI	GGWCC	2 cut(s)	110, 140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmiI	GTMKAC	2 cut(s)	219, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.