Rh5DG512500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007364
Physical Location & Seq
Reverse (-)
79915206 .. 79918705
3500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG512500.1

Sequence Viewer

Length: 999 bp
ATGGATCTCCTCCTCTTGGAGAAGACCCTAATGGGTCTTTTCGTCGCCGTCGTGGTCGCCATCGTTGTGTCCAAGCTCCGAGGCAAGAAGTTTAAGCTGCCTCCGGGTCCGATTCCGGTCCCGGTGTTCGGCAACTGGCTCCAGGTCGGCGATGACCTCAACCACCGCAATCTGACAGACATGGCCAAGAGATTCGGCGACGTGTTCATGCTCCGCATGGGGCAGCGCAACCTCGTCGTCGTGTCGTCGCCGGACCTGGCCAAGGAGGTCCTCCACACGCAGGGGGTCGAGTTCGGCTCACGAACACGAAACGTCGTGTTCGATATCTTCACCGGCAAAGGACAGGACATGGTGTTCACCGTTTACGGCGAGCACTGGCGGAAAATGAGACGCATAATGACCGTTCCGTTTTTTACCAACAAGGTGGTGCAGCAGTACCGCCACGGCTGGGAGGCGGAGGCGGCTGCGGTGGTGGAGGACATCAAGAACAAGCACCCCGAGGCCGCCACGAGTGGGATGGTGCTACGTAGGAGGCTACAGCTGATGATGTACAACAACATGTACAGGATCATGTTCGACAGGAGATTTGAAAGCGAGGAGGATCCCCTGTTTGTGAAATTGAAGGGTTTGAATGGAGAGAGGAGCCGGTTGGCGCAGAGCTTCGAGTATAACTACGGCGATTTCATTCCGGTGCTCCGGCCATTCCTCAGGGGGTACTTGAAGATCTGTAAGGAGGTGAAGGAGAAGAGGATTAAGCTCTTCAAGGACTATTTCGTCGACGAGAGAAAGAAACTTGCAAGCACACAAGCCACAACTAATGAAGGGTTGAAGTGTGCCATTGACCACATCTTGGACGCTCAGCAGAAAGGAGAGATCAACGAGGACAATGTCCTTTACATCGTCGAGAACATTAACGTCGCCGGTAAGTCGGACCCACTCCACTCATATCTCGAACTCTCAGTCGTAAATCCTTTTATGTTATTATCTGTTTTATCTTGA

Protein Analysis

332

Amino Acids

38.24

Weight (kDa)

9.36

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 308 3.5e-49 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 773
AccB7I CCANNNNNTGG 1 cut(s) 850
AccI GTMKAC 1 cut(s) 777
AciI CCGC 8 cut(s) 166, 214, 379, 439, 455, 461, 467, 504
AclWI GGATC 4 cut(s) 12, 575, 596, 609
AcoI YGGCCR 3 cut(s) 183, 258, 698
AfaI GTAC 4 cut(s) 437, 551, 563, 716
AfiI CCNNNNNNNGG 7 cut(s) 16, 128, 262, 280, 448, 513, 850
AflIII ACRYGT 2 cut(s) 201, 558
AgsI TTSAA 6 cut(s) 590, 622, 631, 721, 763, 829
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 141, 255
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
AluBI AGCT 5 cut(s) 76, 97, 541, 660, 757
AluI AGCT 5 cut(s) 76, 97, 541, 660, 757
Alw21I GWGCWC 2 cut(s) 375, 696
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 4 cut(s) 12, 575, 596, 609
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 4 cut(s) 183, 258, 501, 698
ApeKI GCWGC 4 cut(s) 97, 223, 430, 464
ArsI GACNNNNNNTTYG 4 cut(s) 569, 601, 945, 977
AspLEI GCGC 2 cut(s) 228, 655
AspS9I GGNCC 5 cut(s) 107, 118, 253, 268, 931
AsuC2I CCSGG 2 cut(s) 105, 122
AsuHPI GGTGA 3 cut(s) 322, 349, 748
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 5 cut(s) 107, 118, 253, 268, 931
AxyI CCTNAGG 1 cut(s) 707
BalI TGGCCA 2 cut(s) 185, 260
BamHI GGATCC 1 cut(s) 601
BauI CACGAG 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 375, 696
BbvI GCAGC 4 cut(s) 84, 235, 442, 451
BccI CCATC 2 cut(s) 68, 511
BceAI ACGGC 4 cut(s) 32, 382, 460, 691
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 2 cut(s) 143, 257
BcnI CCSGG 2 cut(s) 105, 122
BcoDI GTCTC 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 536
BglII AGATCT 1 cut(s) 723
BisI GCNGC 6 cut(s) 98, 224, 431, 462, 465, 504
BlpI GCTNAGC 1 cut(s) 858
BlsI GCNGC 6 cut(s) 99, 225, 432, 463, 466, 505
Bme1390I CCNGG 4 cut(s) 105, 122, 143, 257
Bme18I GGWCC 5 cut(s) 107, 118, 253, 268, 931
BmeT110I CYCGRG 1 cut(s) 497
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 107, 118, 253, 268, 931
BmiI GGNNCC 6 cut(s) 108, 120, 140, 603, 644, 933
BmrFI CCNGG 4 cut(s) 105, 122, 143, 257
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 858
BpuMI CCSGG 2 cut(s) 105, 122
BsaAI YACGTR 1 cut(s) 527
BsaJI CCNNGG 4 cut(s) 79, 261, 442, 498
BsaWI WCCGGW 2 cut(s) 115, 688
Bsc4I CCNNNNNNNGG 7 cut(s) 16, 128, 262, 280, 448, 513, 850
Bse118I RCCGGY 3 cut(s) 332, 645, 920
Bse1I ACTGG 2 cut(s) 140, 380
Bse21I CCTNAGG 1 cut(s) 707
BseBI CCWGG 2 cut(s) 143, 257
BseDI CCNNGG 4 cut(s) 79, 261, 442, 498
BseGI GGATG 1 cut(s) 522
BseLI CCNNNNNNNGG 7 cut(s) 16, 128, 262, 280, 448, 513, 850
BseMII CTCAG 3 cut(s) 721, 872, 972
BseNI ACTGG 2 cut(s) 140, 380
BseRI GAGGAG 2 cut(s) 611, 655
BseXI GCAGC 4 cut(s) 84, 235, 442, 451
BseYI CCCAGC 1 cut(s) 447
BsgI GTGCAG 1 cut(s) 449
BshFI GGCC 4 cut(s) 185, 260, 503, 700
BsiHKAI GWGCWC 2 cut(s) 375, 696
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 9 cut(s) 104, 116, 122, 251, 333, 646, 689, 697, 921
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 7 cut(s) 16, 128, 262, 280, 448, 513, 850
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 4 cut(s) 185, 260, 503, 700
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 375, 696
Bsp1407I TGTACA 2 cut(s) 549, 561
Bsp143I GATC 5 cut(s) 4, 567, 601, 723, 873
Bsp1720I GCTNAGC 1 cut(s) 858
BspACI CCGC 8 cut(s) 166, 214, 379, 439, 455, 461, 467, 504
BspANI GGCC 4 cut(s) 185, 260, 503, 700
BspCNI CTCAG 3 cut(s) 720, 871, 971
BspLI GGNNCC 6 cut(s) 108, 120, 140, 603, 644, 933
BspPI GGATC 4 cut(s) 12, 575, 596, 609
BspQI GCTCTTC 1 cut(s) 764
BsrFI RCCGGY 3 cut(s) 332, 645, 920
BsrGI TGTACA 2 cut(s) 549, 561
BsrI ACTGG 2 cut(s) 140, 380
BssAI RCCGGY 3 cut(s) 332, 645, 920
BssECI CCNNGG 4 cut(s) 79, 261, 442, 498
BssMI GATC 5 cut(s) 4, 567, 601, 723, 873
BssSI CACGAG 1 cut(s) 508
BssT1I CCWWGG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 508
Bst2UI CCWGG 2 cut(s) 143, 257
Bst4CI ACNGT 2 cut(s) 361, 403
Bst6I CTCTTC 2 cut(s) 740, 764
BstAUI TGTACA 2 cut(s) 549, 561
BstBAI YACGTR 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 371, 799
BstDEI CTNAG 3 cut(s) 707, 858, 958
BstDSI CCRYGG 1 cut(s) 442
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 522
BstHHI GCGC 2 cut(s) 228, 655
BstKTI GATC 5 cut(s) 7, 570, 604, 726, 876
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 5 cut(s) 4, 567, 601, 723, 873
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 2 cut(s) 143, 257
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 103, 120, 141, 255
BstSFI CTRYAG 1 cut(s) 536
BstSNI TACGTA 1 cut(s) 527
BstV1I GCAGC 4 cut(s) 84, 235, 442, 451
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 3 cut(s) 4, 601, 723
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 3 cut(s) 4, 601, 723
Bsu36I CCTNAGG 1 cut(s) 707
BsuRI GGCC 4 cut(s) 185, 260, 503, 700
BtgI CCRYGG 1 cut(s) 442
BtgZI GCGATG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 371, 799
CfoI GCGC 2 cut(s) 228, 655
Cfr10I RCCGGY 3 cut(s) 332, 645, 920
Cfr13I GGNCC 5 cut(s) 107, 118, 253, 268, 931
CseI GACGC 2 cut(s) 399, 863
Csp6I GTAC 4 cut(s) 436, 550, 562, 715
CviAII CATG 6 cut(s) 181, 208, 217, 349, 559, 571
CviQI GTAC 4 cut(s) 436, 550, 562, 715
DdeI CTNAG 3 cut(s) 707, 858, 958
DpnI GATC 5 cut(s) 6, 569, 603, 725, 875
DpnII GATC 5 cut(s) 4, 567, 601, 723, 873
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
EaeI YGGCCR 3 cut(s) 183, 258, 698
Eam1104I CTCTTC 2 cut(s) 740, 764
EarI CTCTTC 2 cut(s) 740, 764
EciI GGCGGA 2 cut(s) 394, 470
Eco105I TACGTA 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 5 cut(s) 107, 118, 253, 268, 931
Eco81I CCTNAGG 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 141, 255
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 6 cut(s) 184, 211, 220, 352, 562, 574
FaqI GGGAC 1 cut(s) 104
FatI CATG 6 cut(s) 180, 207, 216, 348, 558, 570
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 6 cut(s) 98, 224, 431, 462, 465, 504
FokI GGATG 1 cut(s) 529
Fsp4HI GCNGC 6 cut(s) 98, 224, 431, 462, 465, 504
GlaI GCGC 2 cut(s) 227, 654
GluI GCNGC 6 cut(s) 98, 224, 431, 462, 465, 504
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 4 cut(s) 185, 260, 503, 700
HapII CCGG 9 cut(s) 104, 116, 122, 251, 333, 646, 689, 697, 921
HgaI GACGC 2 cut(s) 399, 863
HhaI GCGC 2 cut(s) 228, 655
Hin1II CATG 6 cut(s) 184, 211, 220, 352, 562, 574
Hin6I GCGC 2 cut(s) 226, 653
HinP1I GCGC 2 cut(s) 226, 653
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 2 cut(s) 112, 192
HpaII CCGG 9 cut(s) 104, 116, 122, 251, 333, 646, 689, 697, 921
HphI GGTGA 3 cut(s) 322, 349, 748
Hpy166II GTNNAC 3 cut(s) 357, 364, 778
Hpy188I TCNGA 4 cut(s) 80, 111, 174, 931
Hpy188III TCNNGA 5 cut(s) 300, 484, 904, 950, 996
Hpy8I GTNNAC 3 cut(s) 357, 364, 778
HpyAV CCTTC 3 cut(s) 616, 733, 815
HpyCH4III ACNGT 2 cut(s) 361, 403
HpyCH4IV ACGT 4 cut(s) 201, 312, 526, 915
HpyCH4V TGCA 2 cut(s) 430, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 3 cut(s) 707, 858, 958
HpySE526I ACGT 4 cut(s) 201, 312, 526, 915
Hsp92II CATG 6 cut(s) 184, 211, 220, 352, 562, 574
HspAI GCGC 2 cut(s) 226, 653
Kzo9I GATC 5 cut(s) 4, 567, 601, 723, 873
LguI GCTCTTC 1 cut(s) 764
LmnI GCTCC 5 cut(s) 81, 144, 216, 642, 699
Lsp1109I GCAGC 4 cut(s) 84, 235, 442, 451
MaeII ACGT 4 cut(s) 201, 312, 526, 915
MalI GATC 5 cut(s) 6, 569, 603, 725, 875
MboI GATC 5 cut(s) 4, 567, 601, 723, 873
MboII GAAGA 5 cut(s) 34, 319, 733, 751, 757
MflI RGATCY 3 cut(s) 4, 601, 723
MhlI GDGCHC 2 cut(s) 375, 696
MlsI TGGCCA 2 cut(s) 185, 260
MluCI AATT 1 cut(s) 617
MluNI TGGCCA 2 cut(s) 185, 260
MmeI TCCRAC 1 cut(s) 909
Mox20I TGGCCA 2 cut(s) 185, 260
MscI TGGCCA 2 cut(s) 185, 260
MseI TTAA 3 cut(s) 93, 753, 912
MslI CAYNNNNRTG 2 cut(s) 65, 689
Msp20I TGGCCA 2 cut(s) 185, 260
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 9 cut(s) 104, 116, 122, 251, 333, 646, 689, 697, 921
MspR9I CCNGG 4 cut(s) 105, 122, 143, 257
MvaI CCWGG 2 cut(s) 143, 257
MwoI GCNNNNNNNGC 1 cut(s) 461
NciI CCSGG 2 cut(s) 105, 122
NdeII GATC 5 cut(s) 4, 567, 601, 723, 873
NlaIII CATG 6 cut(s) 184, 211, 220, 352, 562, 574
NlaIV GGNNCC 6 cut(s) 108, 120, 140, 603, 644, 933
NspI RCATGY 1 cut(s) 562
PciI ACATGT 1 cut(s) 558
PciSI GCTCTTC 1 cut(s) 764
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 318
PfeI GAWTC 2 cut(s) 112, 192
PflFI GACNNNGTC 1 cut(s) 887
PflMI CCANNNNNTGG 1 cut(s) 850
PkrI GCNGC 6 cut(s) 99, 225, 432, 463, 466, 505
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 268
PscI ACATGT 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 141, 255
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 2 cut(s) 141, 255
PspN4I GGNNCC 6 cut(s) 108, 120, 140, 603, 644, 933
PspPI GGNCC 5 cut(s) 107, 118, 253, 268, 931
PspPPI RGGWCCY 1 cut(s) 268
PsuI RGATCY 3 cut(s) 4, 601, 723
PsyI GACNNNGTC 1 cut(s) 887
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 4 cut(s) 437, 551, 563, 716
RsaNI GTAC 4 cut(s) 436, 550, 562, 715
RseI CAYNNNNRTG 2 cut(s) 65, 689
SalI GTCGAC 1 cut(s) 776
SapI GCTCTTC 1 cut(s) 764
SaqAI TTAA 3 cut(s) 93, 753, 912
SatI GCNGC 6 cut(s) 98, 224, 431, 462, 465, 504
Sau3AI GATC 5 cut(s) 4, 567, 601, 723, 873
Sau96I GGNCC 5 cut(s) 107, 118, 253, 268, 931
ScrFI CCNGG 4 cut(s) 105, 122, 143, 257
SduI GDGCHC 2 cut(s) 375, 696
SfcI CTRYAG 1 cut(s) 536
SgrDI CGTCGACG 1 cut(s) 776
SinI GGWCC 5 cut(s) 107, 118, 253, 268, 931
SmiMI CAYNNNNRTG 2 cut(s) 65, 689
SnaBI TACGTA 1 cut(s) 527
Sse9I AATT 1 cut(s) 617
SsiI CCGC 8 cut(s) 166, 214, 379, 439, 455, 461, 467, 504
StyD4I CCNGG 4 cut(s) 103, 120, 141, 255
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 361, 403
TaiI ACGT 4 cut(s) 204, 315, 529, 918
TaqI TCGA 7 cut(s) 288, 321, 576, 663, 777, 903, 951
TasI AATT 1 cut(s) 617
TatI WGTACW 2 cut(s) 549, 561
TauI GCSGC 2 cut(s) 464, 506
TfiI GAWTC 2 cut(s) 112, 192
Tru1I TTAA 3 cut(s) 93, 753, 912
Tru9I TTAA 3 cut(s) 93, 753, 912
TscAI CASTG 1 cut(s) 380
TseI GCWGC 4 cut(s) 97, 223, 430, 464
TspDTI ATGAA 3 cut(s) 196, 673, 834
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 1 cut(s) 380
Tth111I GACNNNGTC 1 cut(s) 887
Van91I CCANNNNNTGG 1 cut(s) 850
VpaK11BI GGWCC 5 cut(s) 107, 118, 253, 268, 931
XagI CCTNNNNNAGG 1 cut(s) 260
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.