Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007364

Physical Location & Seq

Genomic Coordinates Forward (+)

3175270 .. 3179133

Gene Structure 3864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGTGCTGCGGAGGCGGCTGCAGCTGATGATGTACAACAACATGTACAGAATCATGTTCGATCGGCGATTCGAAAGCGAGGAGGATCCCCTGTTCGTGAAGCTCAAGGGATTGAACGGGGAGAGGAGCCGATTGGCGCAGAGCTTCGAGTACAACTACGGCGATTTTATCCCAATATTAAGGCCCTTTTTGAGAGGGTATTTGAAGATCTGCAAGGAGGTGAAGGAGAAGAGGATTCAGCTGTTTAAGAGCTATTTCGTTGACGAGAGGAACAGGAAACTTTCAAGCACACGGGCTACAACAAACGAGGGGTTGAAGTGCGCCATTGACCACATCCTCGACGCGCAGCAGAAGGGAGAAATCAACGAGGACAATGTTCTCTACATCGTCGAGAACATCAATGTTGCTGCTATTGAAACCACATTGTGGTCGATCGAGTGGGGAATTGCCGAGCTAGTGAACCATCCTGAAATCCAGAAGAAGTTGAGGGATGAACTTGACGCAGTCCTCGGCCGCGGAGTTCAGATCACAGAGCCCGATGTTCAGAAACTTCCCTACCTGCAAGCCCTGATCAAGGAGACTCTACGACTTCGCATGGCAATCCCACTCCTTGTTCCCCACATGAACCTCCAGGACGCCAAGCTCGGTGGGTTTGACATCCCGGCGGAGAGCAAGATTTTGGTGAATGCTTGGTGGTTGGCAAACAACCCTGCCCTGTGGAAGAAACCGGAGGAGTTTAGGCCCGAGAGGTTTTTGGAGGAGGAGTCGAAGGTGGAGGCTAACGGGAACGACTTTAGGTATCTCCCGTTTGGTGTTGGAAGGAGAAGCTGTCCCGGGATTATCCTGGCCCTGCCAATCCTAGGCATTACAATTGGACGTTTAGTCCAGAACTTCGAGCTTCTGCCTCCGCCGGGACAGTCCAAGCTTGACACCTCGGAGAAAGGTGGGCAGTTCAGCCTGCACATCCTGAAGCATTCCACCATTGTGATGAAGTCAAGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009808 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0016710 GO:0019748 GO:0044237 GO:0044550 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 ko01220 map00130 map00360 map00940 map00941 map00945 map01100 map01110 map01220

Pfam Domains

Protein Families

p450

Protein Analysis

335

Amino Acids

38.58

Weight (kDa)

8.94

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 326	6.5e-85	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30490
fragaria_vesca	FvH4_3g40570
malus_domestica	MD00G1221400.v1.1 MD03G1050900.v1.1 MD03G1051000.v1.1 MD03G1051100.v1.1 MD03G1051300.v1.1 MD11G1052900.v1.1
prunus_persica	Prupe.6G040400_v2.0.a1
pyrus_communis	pycom03g04020 pycom03g04030 pycom03g04050 pycom03g04060
rosa_chinensis	RchiOBHm_Chr5g0073351
rosa_laevigata	RLG00000036379
rosa_multiflora	Rmu_sc0001997.1_g000001 Rmu_sc0005684.1_g000008 Rmu_sc0006213.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007890
rosa_rugosa	Rorug05G0422900
rosa_samantha	Rh5AG479500 Rh5BG500700 Rh5CG523800 Rh5DG512500
rosa_wichuraiana	Rw5G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	567
AccB7I	CCANNNNNTGG	1 cut(s)	426
AccII	CGCG	2 cut(s)	344, 516
AciI	CCGC	6 cut(s)	10, 16, 514, 516, 665, 908
AclWI	GGATC	2 cut(s)	80, 93
AcoI	YGGCCR	1 cut(s)	511
AcuI	CTGAAG	1 cut(s)	989
AcyI	GRCGYC	1 cut(s)	636
AdeI	CACNNNGTG	1 cut(s)	426
AfaI	GTAC	3 cut(s)	35, 47, 152
AfiI	CCNNNNNNNGG	4 cut(s)	426, 574, 860, 911
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	5 cut(s)	115, 205, 285, 316, 416
AhdI	GACNNNNNGTC	1 cut(s)	881
AjnI	CCWGG	2 cut(s)	630, 843
AleI	CACNNNNGTG	1 cut(s)	983
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	80, 93
Ama87I	CYCGRG	2 cut(s)	743, 833
AoxI	GGCC	4 cut(s)	182, 511, 740, 846
ApeKI	GCWGC	5 cut(s)	7, 19, 22, 346, 407
AspA2I	CCTAGG	1 cut(s)	859
AspLEI	GCGC	3 cut(s)	139, 323, 346
AspS9I	GGNCC	3 cut(s)	183, 741, 847
AsuC2I	CCSGG	4 cut(s)	662, 834, 835, 912
AsuHPI	GGTGA	2 cut(s)	232, 694
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	2 cut(s)	743, 833
AvrII	CCTAGG	1 cut(s)	859
BamHI	GGATCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	6, 34, 358, 394
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	2 cut(s)	632, 845
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	4 cut(s)	662, 834, 835, 912
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	455, 860
BfmI	CTRYAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	567
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	7 cut(s)	8, 17, 20, 23, 347, 408, 514
BlnI	CCTAGG	1 cut(s)	859
BlsI	GCNGC	7 cut(s)	9, 18, 21, 24, 348, 409, 515
Bme1390I	CCNGG	6 cut(s)	632, 662, 834, 835, 845, 912
BmeRI	GACNNNNNGTC	1 cut(s)	881
BmeT110I	CYCGRG	2 cut(s)	743, 833
BmgT120I	GGNCC	3 cut(s)	183, 741, 847
BmiI	GGNNCC	2 cut(s)	87, 128
BmrFI	CCNGG	6 cut(s)	632, 662, 834, 835, 845, 912
BpmI	CTGGAG	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	4 cut(s)	662, 834, 835, 912
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	5 cut(s)	508, 514, 833, 859, 933
BsaWI	WCCGGW	1 cut(s)	727
BsaXI	ACNNNNNCTCC	4 cut(s)	749, 779, 814, 844
Bsc4I	CCNNNNNNNGG	4 cut(s)	426, 574, 860, 911
BseBI	CCWGG	2 cut(s)	632, 845
BseDI	CCNNGG	5 cut(s)	508, 514, 833, 859, 933
BseGI	GGATG	5 cut(s)	333, 463, 496, 657, 963
BseLI	CCNNNNNNNGG	4 cut(s)	426, 574, 860, 911
BseRI	GAGGAG	5 cut(s)	95, 139, 746, 773, 776
BseX3I	CGGCCG	1 cut(s)	511
BseXI	GCAGC	4 cut(s)	6, 34, 358, 394
BsgI	GTGCAG	1 cut(s)	944
Bsh1236I	CGCG	2 cut(s)	344, 516
Bsh1285I	CGRYCG	3 cut(s)	64, 435, 514
BshFI	GGCC	4 cut(s)	184, 513, 742, 848
BsiEI	CGRYCG	3 cut(s)	64, 435, 514
BsiHKCI	CYCGRG	2 cut(s)	743, 833
BsiSI	CCGG	4 cut(s)	662, 728, 834, 911
BslFI	GGGAC	2 cut(s)	816, 927
BslI	CCNNNNNNNGG	4 cut(s)	426, 574, 860, 911
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	816, 927
BsmI	GAATGC	2 cut(s)	691, 973
BsnI	GGCC	4 cut(s)	184, 513, 742, 848
BsoBI	CYCGRG	2 cut(s)	743, 833
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp1407I	TGTACA	2 cut(s)	33, 45
Bsp143I	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
BspACI	CCGC	6 cut(s)	10, 16, 514, 516, 665, 908
BspANI	GGCC	4 cut(s)	184, 513, 742, 848
BspFNI	CGCG	2 cut(s)	344, 516
BspLI	GGNNCC	2 cut(s)	87, 128
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	2 cut(s)	80, 93
BspT104I	TTCGAA	1 cut(s)	72
BsrGI	TGTACA	2 cut(s)	33, 45
BssECI	CCNNGG	5 cut(s)	508, 514, 833, 859, 933
BssMI	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
BssNI	GRCGYC	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	859
Bst2UI	CCWGG	2 cut(s)	632, 845
Bst4CI	ACNGT	1 cut(s)	918
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	636
BstAUI	TGTACA	2 cut(s)	33, 45
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	564, 959
BstDSI	CCRYGG	1 cut(s)	514
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	5 cut(s)	333, 463, 496, 657, 963
BstFNI	CGCG	2 cut(s)	344, 516
BstHHI	GCGC	3 cut(s)	139, 323, 346
BstKTI	GATC	6 cut(s)	64, 88, 210, 435, 528, 573
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
BstMCI	CGRYCG	3 cut(s)	64, 435, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 16, 22
BstNI	CCWGG	2 cut(s)	632, 845
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	6 cut(s)	630, 660, 832, 833, 843, 910
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	2 cut(s)	344, 516
BstV1I	GCAGC	4 cut(s)	6, 34, 358, 394
BstX2I	RGATCY	2 cut(s)	85, 207
BstYI	RGATCY	2 cut(s)	85, 207
BstZI	CGGCCG	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	184, 513, 742, 848
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	5 cut(s)	333, 463, 496, 657, 963
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	564, 959
CfoI	GCGC	3 cut(s)	139, 323, 346
Cfr13I	GGNCC	3 cut(s)	183, 741, 847
Cfr42I	CCGCGG	1 cut(s)	517
Cfr9I	CCCGGG	1 cut(s)	833
CseI	GACGC	3 cut(s)	350, 509, 644
Csp6I	GTAC	3 cut(s)	34, 46, 151
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	4 cut(s)	43, 55, 595, 622
CviQI	GTAC	3 cut(s)	34, 46, 151
DpnI	GATC	6 cut(s)	63, 87, 209, 434, 527, 572
DpnII	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
DraIII	CACNNNGTG	1 cut(s)	426
DriI	GACNNNNNGTC	1 cut(s)	881
EaeI	YGGCCR	1 cut(s)	511
EagI	CGGCCG	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	224
Eam1105I	GACNNNNNGTC	1 cut(s)	881
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	2 cut(s)	680, 897
EclXI	CGGCCG	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	859
Eco24I	GRGCYC	1 cut(s)	537
Eco52I	CGGCCG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	989
Eco88I	CYCGRG	2 cut(s)	743, 833
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	630, 843
EcoT14I	CCWWGG	1 cut(s)	859
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	4 cut(s)	46, 58, 598, 625
FaiI	YATR	4 cut(s)	44, 56, 596, 623
FaqI	GGGAC	2 cut(s)	816, 927
FatI	CATG	4 cut(s)	42, 54, 594, 621
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	7 cut(s)	8, 17, 20, 23, 347, 408, 514
FokI	GGATG	5 cut(s)	320, 450, 503, 644, 950
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	7 cut(s)	8, 17, 20, 23, 347, 408, 514
FspBI	CTAG	2 cut(s)	455, 860
GlaI	GCGC	3 cut(s)	138, 322, 345
GluI	GCNGC	7 cut(s)	8, 17, 20, 23, 347, 408, 514
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	4 cut(s)	184, 513, 742, 848
HapII	CCGG	4 cut(s)	662, 728, 834, 911
HgaI	GACGC	3 cut(s)	350, 509, 644
HhaI	GCGC	3 cut(s)	139, 323, 346
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	4 cut(s)	46, 58, 598, 625
Hin6I	GCGC	3 cut(s)	137, 321, 344
HinP1I	GCGC	3 cut(s)	137, 321, 344
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	5 cut(s)	51, 69, 235, 580, 764
HpaII	CCGG	4 cut(s)	662, 728, 834, 911
HphI	GGTGA	2 cut(s)	232, 694
Hpy166II	GTNNAC	2 cut(s)	262, 460
Hpy188I	TCNGA	3 cut(s)	525, 546, 937
Hpy188III	TCNNGA	6 cut(s)	97, 391, 467, 475, 886, 967
Hpy8I	GTNNAC	2 cut(s)	262, 460
Hpy99I	CGWCG	2 cut(s)	344, 392
HpyAV	CCTTC	4 cut(s)	217, 346, 763, 813
HpyCH4III	ACNGT	1 cut(s)	918
HpyCH4IV	ACGT	1 cut(s)	877
HpyCH4V	TGCA	4 cut(s)	22, 213, 562, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 16, 22
HpySE526I	ACGT	1 cut(s)	877
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	4 cut(s)	46, 58, 598, 625
HspAI	GCGC	3 cut(s)	137, 321, 344
Ksp22I	TGATCA	1 cut(s)	570
KspI	CCGCGG	1 cut(s)	517
Kzo9I	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	4 cut(s)	6, 34, 358, 394
MaeI	CTAG	2 cut(s)	455, 860
MaeII	ACGT	1 cut(s)	877
MalI	GATC	6 cut(s)	63, 87, 209, 434, 527, 572
MboI	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
MboII	GAAGA	4 cut(s)	217, 241, 490, 733
MfeI	CAATTG	1 cut(s)	870
MflI	RGATCY	2 cut(s)	85, 207
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	2 cut(s)	444, 870
MlyI	GAGTC	2 cut(s)	574, 773
MmeI	TCCRAC	1 cut(s)	796
MseI	TTAA	2 cut(s)	179, 246
MslI	CAYNNNNRTG	2 cut(s)	983, 986
MspA1I	CMGCKG	3 cut(s)	25, 241, 516
MspI	CCGG	4 cut(s)	662, 728, 834, 911
MspR9I	CCNGG	6 cut(s)	632, 662, 834, 835, 845, 912
MunI	CAATTG	1 cut(s)	870
Mva1269I	GAATGC	2 cut(s)	691, 973
MvaI	CCWGG	2 cut(s)	632, 845
MvnI	CGCG	2 cut(s)	344, 516
MwoI	GCNNNNNNNGC	3 cut(s)	13, 16, 22
NciI	CCSGG	4 cut(s)	662, 834, 835, 912
NdeII	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
NlaIII	CATG	4 cut(s)	46, 58, 598, 625
NlaIV	GGNNCC	2 cut(s)	87, 128
NmeAIII	GCCGAG	2 cut(s)	475, 489
NspI	RCATGY	1 cut(s)	46
NspV	TTCGAA	1 cut(s)	72
OliI	CACNNNNGTG	1 cut(s)	983
PciI	ACATGT	1 cut(s)	42
PctI	GAATGC	2 cut(s)	691, 973
PfeI	GAWTC	3 cut(s)	51, 69, 235
PflFI	GACNNNGTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	7 cut(s)	9, 18, 21, 24, 348, 409, 515
Ple19I	CGATCG	2 cut(s)	64, 435
PleI	GAGTC	2 cut(s)	574, 772
PpsI	GAGTC	2 cut(s)	574, 772
PscI	ACATGT	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	630, 843
PspGI	CCWGG	2 cut(s)	630, 843
PspN4I	GGNNCC	2 cut(s)	87, 128
PspPI	GGNCC	3 cut(s)	183, 741, 847
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	85, 207
PsyI	GACNNNGTC	1 cut(s)	503
PvuI	CGATCG	2 cut(s)	64, 435
PvuII	CAGCTG	2 cut(s)	25, 241
RsaI	GTAC	3 cut(s)	35, 47, 152
RsaNI	GTAC	3 cut(s)	34, 46, 151
RseI	CAYNNNNRTG	2 cut(s)	983, 986
SacII	CCGCGG	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	179, 246
SatI	GCNGC	7 cut(s)	8, 17, 20, 23, 347, 408, 514
Sau3AI	GATC	6 cut(s)	61, 85, 207, 432, 525, 570
Sau96I	GGNCC	3 cut(s)	183, 741, 847
SchI	GAGTC	2 cut(s)	574, 773
ScrFI	CCNGG	6 cut(s)	632, 662, 834, 835, 845, 912
SduI	GDGCHC	1 cut(s)	537
SfcI	CTRYAG	1 cut(s)	20
Sfr303I	CCGCGG	1 cut(s)	517
SfuI	TTCGAA	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	517
SmaI	CCCGGG	1 cut(s)	835
SmiMI	CAYNNNNRTG	2 cut(s)	983, 986
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	444, 870
SsiI	CCGC	6 cut(s)	10, 16, 514, 516, 665, 908
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	2 cut(s)	455, 860
StyD4I	CCNGG	6 cut(s)	630, 660, 832, 833, 843, 910
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	1 cut(s)	918
TaiI	ACGT	1 cut(s)	880
TaqI	TCGA	9 cut(s)	60, 72, 147, 339, 390, 431, 435, 767, 894
TasI	AATT	2 cut(s)	444, 870
TatI	WGTACW	3 cut(s)	33, 45, 150
TauI	GCSGC	2 cut(s)	19, 516
TfiI	GAWTC	3 cut(s)	51, 69, 235
Tru1I	TTAA	2 cut(s)	179, 246
Tru9I	TTAA	2 cut(s)	179, 246
TseI	GCWGC	5 cut(s)	7, 19, 22, 346, 407
TspDTI	ATGAA	3 cut(s)	507, 638, 1004
TspMI	CCCGGG	1 cut(s)	833
Tth111I	GACNNNGTC	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	572
XceI	RCATGY	1 cut(s)	46
XmaI	CCCGGG	1 cut(s)	833
XmaJI	CCTAGG	1 cut(s)	859
XspI	CTAG	2 cut(s)	455, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.