Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001997.1

Orthogroup ID

OG0007364

Physical Location & Seq

Genomic Coordinates Reverse (-)

501 .. 1292

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggatctcctcctcttggagaagaccctaatgggtctcttcgtcgccgtcgtggtcgccatcgttgtgtccaagctccgaggcaagaagtttaagctgcctccgggtccgataccggtcccggtgttcggcaactggctccaggtcggcgatgacctcaaccaccgcaatctgacagacatggccaagaaattcggcgacgtgttcatgctccgcatggggcagcgcaacctcgttgtcgtgtcgtcgccggacctggccaaggaggtcctccacacgcagggggtcgagttcggttcacgaacacgaaacgtcgtgttcgatatcttcaccggcaaaggacaggacatggtgttcaccgtttacggtgagcactggcggaaaatgagacgcataatgaccgttccgtttttcaccaacaaggtggtgcagcagtaccgccacggctgggaggcggaggcggctgcggtggtggaggacgtcaagaacaagcaccccgaggccgccaccagtgggatggtgctacgtaggaggctacagctgatgatgtacaacaacatgtacaggatcatgttcgacaggagatttgaaagcgaggaggatcccctgtttgtgaaattgaagggtttgaatggagagaggagccggttggcgcagagcttcgagtataattacggcgatttcattccggtgctccggccattcctcagggggtacttgaagatctgtaaggaggtgaaggagaagaggattaagctcttcaaggactatttcgtcgacgagagaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009808 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0016710 GO:0019748 GO:0044237 GO:0044550 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 ko01220 map00130 map00360 map00940 map00941 map00945 map01100 map01110 map01220

Pfam Domains

Protein Families

p450

Protein Analysis

263

Amino Acids

30.69

Weight (kDa)

9.82

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30490
fragaria_vesca	FvH4_3g40570
malus_domestica	MD00G1221400.v1.1 MD03G1050900.v1.1 MD03G1051000.v1.1 MD03G1051100.v1.1 MD03G1051300.v1.1 MD11G1052900.v1.1
prunus_persica	Prupe.6G040400_v2.0.a1
pyrus_communis	pycom03g04020 pycom03g04030 pycom03g04050 pycom03g04060
rosa_chinensis	RchiOBHm_Chr5g0073351
rosa_laevigata	RLG00000036379
rosa_multiflora	Rmu_sc0001997.1_g000001 Rmu_sc0005684.1_g000008 Rmu_sc0006213.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007890
rosa_rugosa	Rorug05G0422900
rosa_samantha	Rh5AG479500 Rh5BG500700 Rh5CG523800 Rh5DG512500
rosa_wichuraiana	Rw5G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	773
AatII	GACGTC	1 cut(s)	483
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	8 cut(s)	166, 214, 379, 439, 455, 461, 467, 504
AclWI	GGATC	4 cut(s)	12, 575, 596, 609
AcoI	YGGCCR	3 cut(s)	183, 258, 698
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	4 cut(s)	437, 551, 563, 716
AfiI	CCNNNNNNNGG	6 cut(s)	16, 128, 262, 280, 448, 513
AflIII	ACRYGT	2 cut(s)	201, 558
AgeI	ACCGGT	1 cut(s)	115
AgsI	TTSAA	5 cut(s)	590, 622, 631, 721, 763
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	141, 255
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AluBI	AGCT	5 cut(s)	76, 97, 541, 660, 757
AluI	AGCT	5 cut(s)	76, 97, 541, 660, 757
Alw21I	GWGCWC	2 cut(s)	375, 696
Alw26I	GTCTC	2 cut(s)	41, 382
AlwI	GGATC	4 cut(s)	12, 575, 596, 609
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	4 cut(s)	183, 258, 501, 698
ApeKI	GCWGC	4 cut(s)	97, 223, 430, 464
ApoI	RAATTY	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AsiGI	ACCGGT	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	228, 655
AspS9I	GGNCC	4 cut(s)	107, 118, 253, 268
AsuC2I	CCSGG	2 cut(s)	105, 122
AsuHPI	GGTGA	5 cut(s)	322, 349, 380, 406, 748
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	4 cut(s)	107, 118, 253, 268
AxyI	CCTNAGG	1 cut(s)	707
BalI	TGGCCA	2 cut(s)	185, 260
BamHI	GGATCC	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	375, 696
BbvI	GCAGC	4 cut(s)	84, 235, 442, 451
BccI	CCATC	2 cut(s)	68, 511
BceAI	ACGGC	3 cut(s)	32, 460, 691
BciT130I	CCWGG	2 cut(s)	143, 257
BcnI	CCSGG	2 cut(s)	105, 122
BcoDI	GTCTC	2 cut(s)	41, 382
BfmI	CTRYAG	1 cut(s)	536
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	6 cut(s)	98, 224, 431, 462, 465, 504
BlsI	GCNGC	6 cut(s)	99, 225, 432, 463, 466, 505
Bme1390I	CCNGG	4 cut(s)	105, 122, 143, 257
Bme18I	GGWCC	4 cut(s)	107, 118, 253, 268
BmeT110I	CYCGRG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	4 cut(s)	107, 118, 253, 268
BmiI	GGNNCC	5 cut(s)	108, 120, 140, 603, 644
BmrFI	CCNGG	4 cut(s)	105, 122, 143, 257
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	105, 122
BsaAI	YACGTR	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	79, 261, 442, 498
BsaWI	WCCGGW	2 cut(s)	115, 688
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 128, 262, 280, 448, 513
Bse118I	RCCGGY	3 cut(s)	115, 332, 645
Bse1I	ACTGG	3 cut(s)	140, 380, 510
Bse21I	CCTNAGG	1 cut(s)	707
BseBI	CCWGG	2 cut(s)	143, 257
BseDI	CCNNGG	4 cut(s)	79, 261, 442, 498
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	6 cut(s)	16, 128, 262, 280, 448, 513
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	3 cut(s)	140, 380, 510
BseRI	GAGGAG	2 cut(s)	611, 655
BseXI	GCAGC	4 cut(s)	84, 235, 442, 451
BseYI	CCCAGC	1 cut(s)	447
BsgI	GTGCAG	1 cut(s)	449
BshFI	GGCC	4 cut(s)	185, 260, 503, 700
BshTI	ACCGGT	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	375, 696
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	8 cut(s)	104, 116, 122, 251, 333, 646, 689, 697
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	6 cut(s)	16, 128, 262, 280, 448, 513
BsmAI	GTCTC	2 cut(s)	41, 382
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	4 cut(s)	185, 260, 503, 700
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	375, 696
Bsp1407I	TGTACA	2 cut(s)	549, 561
Bsp143I	GATC	4 cut(s)	4, 567, 601, 723
BspACI	CCGC	8 cut(s)	166, 214, 379, 439, 455, 461, 467, 504
BspANI	GGCC	4 cut(s)	185, 260, 503, 700
BspCNI	CTCAG	1 cut(s)	720
BspLI	GGNNCC	5 cut(s)	108, 120, 140, 603, 644
BspPI	GGATC	4 cut(s)	12, 575, 596, 609
BspQI	GCTCTTC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	41
BsrFI	RCCGGY	3 cut(s)	115, 332, 645
BsrGI	TGTACA	2 cut(s)	549, 561
BsrI	ACTGG	3 cut(s)	140, 380, 510
BssAI	RCCGGY	3 cut(s)	115, 332, 645
BssECI	CCNNGG	4 cut(s)	79, 261, 442, 498
BssMI	GATC	4 cut(s)	4, 567, 601, 723
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	143, 257
Bst4CI	ACNGT	3 cut(s)	361, 368, 403
Bst6I	CTCTTC	3 cut(s)	44, 740, 764
BstACI	GRCGYC	1 cut(s)	480
BstAUI	TGTACA	2 cut(s)	549, 561
BstBAI	YACGTR	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	707
BstDSI	CCRYGG	1 cut(s)	442
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	522
BstHHI	GCGC	2 cut(s)	228, 655
BstKTI	GATC	4 cut(s)	7, 570, 604, 726
BstMAI	GTCTC	2 cut(s)	41, 382
BstMBI	GATC	4 cut(s)	4, 567, 601, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	2 cut(s)	143, 257
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	4 cut(s)	103, 120, 141, 255
BstSFI	CTRYAG	1 cut(s)	536
BstSNI	TACGTA	1 cut(s)	527
BstV1I	GCAGC	4 cut(s)	84, 235, 442, 451
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	3 cut(s)	4, 601, 723
BstXI	CCANNNNNNTGG	2 cut(s)	424, 517
BstYI	RGATCY	3 cut(s)	4, 601, 723
Bsu36I	CCTNAGG	1 cut(s)	707
BsuRI	GGCC	4 cut(s)	185, 260, 503, 700
BtgI	CCRYGG	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	373, 517
CfoI	GCGC	2 cut(s)	228, 655
Cfr10I	RCCGGY	3 cut(s)	115, 332, 645
Cfr13I	GGNCC	4 cut(s)	107, 118, 253, 268
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	4 cut(s)	436, 550, 562, 715
CspAI	ACCGGT	1 cut(s)	115
CviAII	CATG	6 cut(s)	181, 208, 217, 349, 559, 571
CviQI	GTAC	4 cut(s)	436, 550, 562, 715
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	4 cut(s)	6, 569, 603, 725
DpnII	GATC	4 cut(s)	4, 567, 601, 723
DrdI	GACNNNNNNGTC	1 cut(s)	773
DseDI	GACNNNNNNGTC	1 cut(s)	773
EaeI	YGGCCR	3 cut(s)	183, 258, 698
Eam1104I	CTCTTC	3 cut(s)	44, 740, 764
EarI	CTCTTC	3 cut(s)	44, 740, 764
EciI	GGCGGA	2 cut(s)	394, 470
Eco105I	TACGTA	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	4 cut(s)	107, 118, 253, 268
Eco81I	CCTNAGG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	141, 255
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	6 cut(s)	184, 211, 220, 352, 562, 574
FaiI	YATR	8 cut(s)	182, 209, 218, 350, 395, 560, 572, 669
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	180, 207, 216, 348, 558, 570
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	6 cut(s)	98, 224, 431, 462, 465, 504
FokI	GGATG	1 cut(s)	529
Fsp4HI	GCNGC	6 cut(s)	98, 224, 431, 462, 465, 504
GlaI	GCGC	2 cut(s)	227, 654
GluI	GCNGC	6 cut(s)	98, 224, 431, 462, 465, 504
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	4 cut(s)	185, 260, 503, 700
HapII	CCGG	8 cut(s)	104, 116, 122, 251, 333, 646, 689, 697
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	2 cut(s)	228, 655
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	6 cut(s)	184, 211, 220, 352, 562, 574
Hin6I	GCGC	2 cut(s)	226, 653
HinP1I	GCGC	2 cut(s)	226, 653
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HpaII	CCGG	8 cut(s)	104, 116, 122, 251, 333, 646, 689, 697
HphI	GGTGA	5 cut(s)	322, 349, 380, 406, 748
Hpy166II	GTNNAC	4 cut(s)	299, 357, 364, 778
Hpy188I	TCNGA	3 cut(s)	80, 111, 174
Hpy188III	TCNNGA	2 cut(s)	300, 484
Hpy8I	GTNNAC	4 cut(s)	299, 357, 364, 778
Hpy99I	CGWCG	7 cut(s)	47, 53, 203, 250, 317, 779, 782
HpyAV	CCTTC	2 cut(s)	616, 733
HpyCH4III	ACNGT	3 cut(s)	361, 368, 403
HpyCH4IV	ACGT	4 cut(s)	201, 312, 480, 526
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	707
HpySE526I	ACGT	4 cut(s)	201, 312, 480, 526
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	6 cut(s)	184, 211, 220, 352, 562, 574
HspAI	GCGC	2 cut(s)	226, 653
Kzo9I	GATC	4 cut(s)	4, 567, 601, 723
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	5 cut(s)	81, 144, 216, 642, 699
Lsp1109I	GCAGC	4 cut(s)	84, 235, 442, 451
MaeII	ACGT	4 cut(s)	201, 312, 480, 526
MalI	GATC	4 cut(s)	6, 569, 603, 725
MboI	GATC	4 cut(s)	4, 567, 601, 723
MboII	GAAGA	6 cut(s)	31, 34, 319, 733, 751, 757
MflI	RGATCY	3 cut(s)	4, 601, 723
MhlI	GDGCHC	2 cut(s)	375, 696
MlsI	TGGCCA	2 cut(s)	185, 260
MluCI	AATT	3 cut(s)	191, 617, 670
MluNI	TGGCCA	2 cut(s)	185, 260
Mox20I	TGGCCA	2 cut(s)	185, 260
MscI	TGGCCA	2 cut(s)	185, 260
MseI	TTAA	2 cut(s)	93, 753
MslI	CAYNNNNRTG	2 cut(s)	65, 689
Msp20I	TGGCCA	2 cut(s)	185, 260
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	8 cut(s)	104, 116, 122, 251, 333, 646, 689, 697
MspR9I	CCNGG	4 cut(s)	105, 122, 143, 257
MvaI	CCWGG	2 cut(s)	143, 257
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	2 cut(s)	105, 122
NdeII	GATC	4 cut(s)	4, 567, 601, 723
NlaIII	CATG	6 cut(s)	184, 211, 220, 352, 562, 574
NlaIV	GGNNCC	5 cut(s)	108, 120, 140, 603, 644
NspI	RCATGY	1 cut(s)	562
PciI	ACATGT	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 318
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	6 cut(s)	99, 225, 432, 463, 466, 505
Ppu21I	YACGTR	1 cut(s)	527
PpuMI	RGGWCCY	1 cut(s)	268
PscI	ACATGT	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	141, 255
PspFI	CCCAGC	1 cut(s)	447
PspGI	CCWGG	2 cut(s)	141, 255
PspN4I	GGNNCC	5 cut(s)	108, 120, 140, 603, 644
PspPI	GGNCC	4 cut(s)	107, 118, 253, 268
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	3 cut(s)	4, 601, 723
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	4 cut(s)	437, 551, 563, 716
RsaNI	GTAC	4 cut(s)	436, 550, 562, 715
RseI	CAYNNNNRTG	2 cut(s)	65, 689
SalI	GTCGAC	1 cut(s)	776
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	93, 753
SatI	GCNGC	6 cut(s)	98, 224, 431, 462, 465, 504
Sau3AI	GATC	4 cut(s)	4, 567, 601, 723
Sau96I	GGNCC	4 cut(s)	107, 118, 253, 268
ScrFI	CCNGG	4 cut(s)	105, 122, 143, 257
SduI	GDGCHC	2 cut(s)	375, 696
SfcI	CTRYAG	1 cut(s)	536
SgrDI	CGTCGACG	1 cut(s)	776
SinI	GGWCC	4 cut(s)	107, 118, 253, 268
SmiMI	CAYNNNNRTG	2 cut(s)	65, 689
SnaBI	TACGTA	1 cut(s)	527
Sse9I	AATT	3 cut(s)	191, 617, 670
SsiI	CCGC	8 cut(s)	166, 214, 379, 439, 455, 461, 467, 504
StyD4I	CCNGG	4 cut(s)	103, 120, 141, 255
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	361, 368, 403
TaiI	ACGT	4 cut(s)	204, 315, 483, 529
TaqI	TCGA	5 cut(s)	288, 321, 576, 663, 777
TasI	AATT	3 cut(s)	191, 617, 670
TatI	WGTACW	2 cut(s)	549, 561
TauI	GCSGC	2 cut(s)	464, 506
Tru1I	TTAA	2 cut(s)	93, 753
Tru9I	TTAA	2 cut(s)	93, 753
TscAI	CASTG	2 cut(s)	380, 517
TseI	GCWGC	4 cut(s)	97, 223, 430, 464
TspDTI	ATGAA	2 cut(s)	196, 673
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	380, 517
VpaK11BI	GGWCC	4 cut(s)	107, 118, 253, 268
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	777
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.