Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004829

Physical Location & Seq

Genomic Coordinates Forward (+)

19042264 .. 19051629

Gene Structure 9366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1159600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGGAGGGCGTTGCTCTCTCTGAAGATCTCTCCGATTCCACTCAGCGTTCCGACTGGGACAGCGACCAGAGAGTCTACTTCATTCCCTACAGTTGGTGGAGAGATGCACAGGAATCGGTTTTGGGCGATTCGGATGGGAAGAGAGGGATTTTGTACGTGACGTCGCAGGCTTCTTCGTATGCGGGCCCTATGAAGCTTATCAACAACATTTTCAACTCAGATCTTGTGTTCAATCTCAGGAGAGAGGATGATGGTGTACGGAGTGGTGAAAATGTCGAAGTCGGTGTCTCAGGCCGAGACTACGCATTGGTGCCCGGAGAAATGTGGGTTCAGGCACTCAGATGGCATAGTGATTCTAAAGTTGCGGTGAAGGGCGGTAAGAGTTTTTCAGCTGCGGAAGATGACATCACCGATGTCTATCCACTGCAACTCAGACTTTTTGTTTCACGAGAAACAAATTCATTGGGAGTAAAGGTTACAAAAAAGGATAATCCAGTCGAGTTCTTCAAGAGAGCCTGCAAAATCTTTAGTGTGGAGTCTGAGATGATACGCATCTGGGACTTTTCGGGGCTGACAAACTTATATTTTATAAATGAAAGAGCCAAGTCTCCTAGAGACTTTCAATGGCAGTCAGATGAGATACTGTTGGAGTTGCAAGTTTATGGGTTCTCAGATTCCCTTAAGTGCAGGGAAAGGAAAAAAGATGAGATAGCCACGCAACATTCGACCATCGCAAATTCCCGTTCTGGTGCTTCAGTTATGATGAATGGTTCTGCTGGAATCACAAATTCTAACTTCATCCGTTCATTATGGGGAAGCTCTTGCGAAACCTGTTCTATAGGATTGACAGGATTACAAAACCTTGGAAATACTTGTTTCATGAATAGTTCCATCCAGTGTTTAGCGCACACTCCAAAGCTTGTTGACTATTTTCTTGGAAATTATGGTAGAGAAATAAATCCAGACAATCCGTTGGGCATGAATGGGGAGATTGCTTTAGCTTTTGGAGATCTGTTAAGGAAGTTATGGGCCCCTGGAGCAACTCCAGTAGCCCCAAGGCTGTTTAAGTCAAAACTTTCTCGATTTGCTCCACAGTTTAATGGCTTTAATCAACATGATTCCCAAGAGCTCCTGGCTTTTTTGCTGGATGGACTTCATGAAGATCTTAATCGTGTAAAATGCAAGCCTTATGTAGAAGTCAAGGATAGTGATGGTCGATCAGATGAAGAGGTAGCTGATGAATATTGGGAAAATCATTTAGCCCGCAATGACTCAATAATTGTTGATGTGTGCCAAGGTCAATATAAATCAACATTAGTTTGTCCTGTTTGCAAAAAGGTCTCTGTTACATTTGATCCATTTATGTACCTCTCGCTTCCATTGCCTTCAACAATGATGCGGACAATGACTTTATCAGTTGTCAATACTGATGGGCATTCTCAACCATCTCAATATACCATTACTGTACCCAAGCATGGAAAACTAGAAGATCTCATCCAGGGTTTAAGTGTTGCATGCTCATTGGGGATTGATGAAACCTTTTTGGTAGCCGAGATATACAACAATCGCATTATACGCTATCTTGAGGAACCAACTGATTCATTATCTTTAATTAGAGATCAAGACAAGCTAGTTGCTTATCGGTCGATGAAAGATGTTGAGCAAGTCCCCTTGGTTGTGTTCATGCATCAGCTGATGGAGGAGCAGCACGTGCATGGGAAACTGACCTCTAGCTTTGGAATTCCTCTTGTATCAAGACTACCCAATTCTGCTAGCGGATCCGATATATGCAATTTATACTTAAAATTACTAAAGCCATTTCAAACACCTGCAAAAGATTCCCAAGAATGTTTTGATAGTTCAAGGGGCACCATTCTTGAAGAAGTCACTAGAACAGAGGATTCCATACCTCCTGTTATAGACGGCGGTGTGAACCCCTGTAATGGAAATGGGGCTGACTCACCCTTTGATTCTGAATTTAAATTTTACATAACAGATGAAAAGGGAATTTCCAAGGATAAAAAGATACTAATGAAGGAAATAGAAGAGAGGAAAGAGACTAAGCGGTTGAATGTTCTTGTATGTTGGCCAAAAAAATTCATCGAACAATATGATACTCGCCTTCTTAGCTCATTGCCGGAGGTTTTCAAGACTGGCCTCTTTGCAAAAAAACCTCAAGAGTCTGTTTCTCTGTATAAGTGCCTTGAAGCATTCTTGAAGGAAGAGCCTCTTGGACCAGAAGACATGTGGTATTGTCCTGGCTGCAAAAAACACTGTCAAGCCAGCAAGAAGTTGGATCTATGGAGACTGCCGGAGATCTTGGTCATTCATTTGAAGAGGTTCTCATATAGTCGGTTTTTTAAGAACAAGCTAGAGACATATGTTGACTTCCCTATTGACGATCTTGAGTTGTCAACATATATTGCCCACAAGAGTGGCCGGTTATGCAATCGTTACATGCTCTATGCAGTTAGTAATCACTTTGGAGGCATGGGAGGTGGTCATTATACTGCATTTGTCCACCATGGGGGTGATCGGTGGTATGACTTCGATGATAGCCACGTTAAACCTATCAGTCAGGACAAGATAAAGTCTTCATCTGCTTATGTTATTTTCTACAGAAGAGTTGTGGAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

880

Amino Acids

99.6

Weight (kDa)

5.79

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	144 - 198	5.8e-28	UBP8-like, ubiquitin-like domain
UCH	PF00443	283 - 873	1.7e-72	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22030 AT5G22030
fragaria_vesca	FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140
malus_domestica	MD03G1159600.v1.1 MD11G1174900.v1.1
prunus_persica	Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1
pyrus_communis	pycom03g11220 pycom03g11230 pycom11g14960 pycom11g14970
rosa_chinensis	RchiOBHm_Chr5g0049121
rosa_laevigata	RLG00000034590
rosa_multiflora	Rmu_sc0000530.1_g000038 Rmu_sc0000530.1_g000039
rosa_roxburghii	Rroxscaffold_1G00032700
rosa_rugosa	Rorug05G0243300 Rorug05G0243300
rosa_samantha	Rh5AG322700 Rh5BG333300 Rh5CG358200 Rh5DG344700
rosa_wichuraiana	Rw5G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AarI	CACCTGC	1 cut(s)	1837
AasI	GACNNNNNNGTC	1 cut(s)	71
AatII	GACGTC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	1837
AccB1I	GGYRCC	2 cut(s)	310, 1868
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	9 cut(s)	182, 365, 375, 395, 1264, 1399, 1776, 1926, 2065
AclWI	GGATC	4 cut(s)	1349, 1773, 1786, 2304
AcoI	YGGCCR	2 cut(s)	2087, 2437
AcsI	RAATTY	8 cut(s)	457, 736, 787, 1740, 1976, 1982, 2007, 2096
AcuI	CTGAAG	2 cut(s)	42, 738
AcvI	CACGTG	1 cut(s)	1711
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	4 cut(s)	155, 258, 1367, 1467
AfiI	CCNNNNNNNGG	4 cut(s)	93, 1475, 1943, 2527
AflII	CTTAAG	1 cut(s)	680
AflIII	ACRYGT	1 cut(s)	2244
AjnI	CCWGG	4 cut(s)	1033, 1131, 1497, 2257
AjuI	GAANNNNNNNTTGG	2 cut(s)	2214, 2246
AleI	CACNNNNGTG	1 cut(s)	2433
Alw21I	GWGCWC	1 cut(s)	1131
Alw26I	GTCTC	8 cut(s)	291, 292, 609, 612, 1345, 2051, 2299, 2369
AlwI	GGATC	4 cut(s)	1349, 1773, 1786, 2304
AoxI	GGCC	6 cut(s)	184, 292, 1029, 2087, 2155, 2437
ApaI	GGGCCC	2 cut(s)	188, 1033
ApeKI	GCWGC	3 cut(s)	392, 1705, 2262
ApoI	RAATTY	8 cut(s)	457, 736, 787, 1740, 1976, 1982, 2007, 2096
ArsI	GACNNNNNNTTYG	4 cut(s)	270, 302, 1949, 1981
Asp700I	GAANNNNTTC	1 cut(s)	2339
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	5 cut(s)	184, 185, 1029, 1030, 2234
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	5 cut(s)	278, 379, 400, 1953, 2543
AsuNHI	GCTAGC	1 cut(s)	1772
AvaII	GGWCC	1 cut(s)	2234
BaeGI	GKGCMC	4 cut(s)	188, 315, 1033, 1871
BalI	TGGCCA	1 cut(s)	2089
BamHI	GGATCC	1 cut(s)	1778
BanI	GGYRCC	2 cut(s)	310, 1868
BanII	GRGCYC	3 cut(s)	188, 1033, 1131
BauI	CACGAG	1 cut(s)	447
BbrPI	CACGTG	1 cut(s)	1711
BbsI	GAAGAC	2 cut(s)	2247, 2586
Bbv12I	GWGCWC	1 cut(s)	1131
BbvI	GCAGC	3 cut(s)	379, 1717, 2249
BceAI	ACGGC	1 cut(s)	1939
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	4 cut(s)	1035, 1133, 1499, 2259
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	8 cut(s)	291, 292, 609, 612, 1345, 2051, 2299, 2369
BfaI	CTAG	7 cut(s)	612, 1484, 1631, 1731, 1773, 1890, 2372
BfmI	CTRYAG	3 cut(s)	88, 837, 2617
BfrI	CTTAAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	1837
BglII	AGATCT	6 cut(s)	25, 220, 1009, 1162, 1489, 2316
BisI	GCNGC	3 cut(s)	393, 1706, 2263
BlsI	GCNGC	3 cut(s)	394, 1707, 2264
Bme1390I	CCNGG	5 cut(s)	315, 1035, 1133, 1499, 2259
Bme18I	GGWCC	1 cut(s)	2234
BmgT120I	GGNCC	5 cut(s)	184, 185, 1029, 1030, 2234
BmiI	GGNNCC	7 cut(s)	186, 312, 1031, 1032, 1590, 1780, 1870
BmrFI	CCNGG	5 cut(s)	315, 1035, 1133, 1499, 2259
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	4 cut(s)	94, 561, 1386, 1696
BmtI	GCTAGC	1 cut(s)	1776
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	2247, 2586
BpmI	CTGGAG	2 cut(s)	1029, 1056
BpuEI	CTTGAG	3 cut(s)	1604, 2160, 2426
BpuMI	CCSGG	1 cut(s)	315
BsaAI	YACGTR	2 cut(s)	157, 1711
BsaBI	GATNNNNATC	3 cut(s)	417, 551, 1167
BsaHI	GRCGYC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	1345
BsaJI	CCNNGG	8 cut(s)	862, 1033, 1055, 1294, 1498, 1671, 2013, 2524
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 1475, 1943, 2527
Bse118I	RCCGGY	1 cut(s)	2439
Bse1I	ACTGG	5 cut(s)	59, 494, 895, 1046, 2158
Bse3DI	GCAATG	3 cut(s)	1273, 1379, 2132
Bse8I	GATNNNNATC	3 cut(s)	417, 551, 1167
BseBI	CCWGG	4 cut(s)	1035, 1133, 1499, 2259
BseDI	CCNNGG	8 cut(s)	862, 1033, 1055, 1294, 1498, 1671, 2013, 2524
BseGI	GGATG	6 cut(s)	139, 253, 798, 891, 1153, 1494
BseJI	GATNNNNATC	3 cut(s)	417, 551, 1167
BseLI	CCNNNNNNNGG	4 cut(s)	93, 1475, 1943, 2527
BseMI	GCAATG	3 cut(s)	1273, 1379, 2132
BseMII	CTCAG	8 cut(s)	56, 231, 250, 303, 352, 445, 531, 684
BseNI	ACTGG	5 cut(s)	59, 494, 895, 1046, 2158
BseRI	GAGGAG	1 cut(s)	1715
BseSI	GKGCMC	4 cut(s)	188, 315, 1033, 1871
BseXI	GCAGC	3 cut(s)	379, 1717, 2249
BsgI	GTGCAG	1 cut(s)	706
Bsh1285I	CGRYCG	1 cut(s)	1646
BshFI	GGCC	6 cut(s)	186, 294, 1031, 2089, 2157, 2439
BshNI	GGYRCC	2 cut(s)	310, 1868
BsiEI	CGRYCG	1 cut(s)	1646
BsiHKAI	GWGCWC	1 cut(s)	1131
BsiSI	CCGG	4 cut(s)	315, 2138, 2312, 2440
BslFI	GGGAC	3 cut(s)	71, 572, 1652
BslI	CCNNNNNNNGG	4 cut(s)	93, 1475, 1943, 2527
BsmAI	GTCTC	8 cut(s)	291, 292, 609, 612, 1345, 2051, 2299, 2369
BsmFI	GGGAC	3 cut(s)	71, 572, 1652
BsmI	GAATGC	2 cut(s)	1435, 2210
BsnI	GGCC	6 cut(s)	186, 294, 1031, 2089, 2157, 2439
Bso31I	GGTCTC	1 cut(s)	1345
Bsp120I	GGGCCC	2 cut(s)	184, 1029
Bsp1286I	GDGCHC	5 cut(s)	188, 315, 1033, 1131, 1871
Bsp19I	CCATGG	1 cut(s)	2524
BspACI	CCGC	9 cut(s)	182, 365, 375, 395, 1264, 1399, 1776, 1926, 2065
BspANI	GGCC	6 cut(s)	186, 294, 1031, 2089, 2157, 2439
BspCNI	CTCAG	8 cut(s)	55, 230, 249, 302, 351, 444, 532, 683
BspHI	TCATGA	2 cut(s)	879, 1156
BspLI	GGNNCC	7 cut(s)	186, 312, 1031, 1032, 1590, 1780, 1870
BspMI	ACCTGC	1 cut(s)	1837
BspOI	GCTAGC	1 cut(s)	1776
BspPI	GGATC	4 cut(s)	1349, 1773, 1786, 2304
BspQI	GCTCTTC	1 cut(s)	2217
BspT107I	GGYRCC	2 cut(s)	310, 1868
BspTI	CTTAAG	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	1345
BsrDI	GCAATG	3 cut(s)	1273, 1379, 2132
BsrFI	RCCGGY	1 cut(s)	2439
BsrI	ACTGG	5 cut(s)	59, 494, 895, 1046, 2158
BssAI	RCCGGY	1 cut(s)	2439
BssECI	CCNNGG	8 cut(s)	862, 1033, 1055, 1294, 1498, 1671, 2013, 2524
BssNI	GRCGYC	1 cut(s)	161
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	6 cut(s)	862, 1055, 1294, 1671, 2013, 2524
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	4 cut(s)	1035, 1133, 1499, 2259
Bst4CI	ACNGT	5 cut(s)	92, 645, 1095, 1465, 2276
Bst6I	CTCTTC	6 cut(s)	134, 1221, 2040, 2217, 2330, 2617
BstACI	GRCGYC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	1711
BstBAI	YACGTR	2 cut(s)	157, 1711
BstC8I	GCNNGC	8 cut(s)	168, 184, 517, 1184, 1264, 1516, 1774, 2284
BstDSI	CCRYGG	1 cut(s)	2524
BstF5I	GGATG	6 cut(s)	139, 253, 798, 891, 1153, 1494
BstHHI	GCGC	1 cut(s)	907
BstMAI	GTCTC	8 cut(s)	291, 292, 609, 612, 1345, 2051, 2299, 2369
BstMCI	CGRYCG	1 cut(s)	1646
BstMWI	GCNNNNNNNGC	6 cut(s)	1037, 1381, 1575, 1711, 2127, 2445
BstNI	CCWGG	4 cut(s)	1035, 1133, 1499, 2259
BstNSI	RCATGY	3 cut(s)	1518, 2248, 2461
BstSCI	CCNGG	5 cut(s)	313, 1033, 1131, 1497, 2257
BstSFI	CTRYAG	3 cut(s)	88, 837, 2617
BstSLI	GKGCMC	4 cut(s)	188, 315, 1033, 1871
BstV1I	GCAGC	3 cut(s)	379, 1717, 2249
BstV2I	GAAGAC	2 cut(s)	2247, 2586
BstX2I	RGATCY	8 cut(s)	25, 220, 1009, 1162, 1489, 1778, 2296, 2316
BstXI	CCANNNNNNTGG	1 cut(s)	2435
BstYI	RGATCY	8 cut(s)	25, 220, 1009, 1162, 1489, 1778, 2296, 2316
BsuRI	GGCC	6 cut(s)	186, 294, 1031, 2089, 2157, 2439
BtgI	CCRYGG	1 cut(s)	2524
BtgZI	GCGATG	1 cut(s)	715
BtsCI	GGATG	6 cut(s)	139, 253, 798, 891, 1153, 1494
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	422, 902, 2272
BveI	ACCTGC	1 cut(s)	1837
Cac8I	GCNNGC	8 cut(s)	168, 184, 517, 1184, 1264, 1516, 1774, 2284
CciI	TCATGA	2 cut(s)	879, 1156
CfoI	GCGC	1 cut(s)	907
Cfr10I	RCCGGY	1 cut(s)	2439
Cfr13I	GGNCC	5 cut(s)	184, 185, 1029, 1030, 2234
Csp6I	GTAC	4 cut(s)	154, 257, 1366, 1466
CviQI	GTAC	4 cut(s)	154, 257, 1366, 1466
DraI	TTTAAA	1 cut(s)	1981
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	2 cut(s)	2087, 2437
Eam1104I	CTCTTC	6 cut(s)	134, 1221, 2040, 2217, 2330, 2617
EarI	CTCTTC	6 cut(s)	134, 1221, 2040, 2217, 2330, 2617
Ecl136II	GAGCTC	1 cut(s)	1129
Eco130I	CCWWGG	6 cut(s)	862, 1055, 1294, 1671, 2013, 2524
Eco24I	GRGCYC	3 cut(s)	188, 1033, 1131
Eco31I	GGTCTC	1 cut(s)	1345
Eco47I	GGWCC	1 cut(s)	2234
Eco53kI	GAGCTC	1 cut(s)	1129
Eco57I	CTGAAG	2 cut(s)	42, 738
Eco72I	CACGTG	1 cut(s)	1711
EcoICRI	GAGCTC	1 cut(s)	1129
EcoO109I	RGGNCCY	2 cut(s)	185, 1030
EcoRI	GAATTC	1 cut(s)	1740
EcoRII	CCWGG	4 cut(s)	1033, 1131, 1497, 2257
EcoT14I	CCWWGG	6 cut(s)	862, 1055, 1294, 1671, 2013, 2524
EcoT22I	ATGCAT	1 cut(s)	1689
EcoT38I	GRGCYC	3 cut(s)	188, 1033, 1131
ErhI	CCWWGG	6 cut(s)	862, 1055, 1294, 1671, 2013, 2524
FalI	AAGNNNNNCTT	2 cut(s)	2214, 2246
FaqI	GGGAC	3 cut(s)	71, 572, 1652
FauI	CCCGC	2 cut(s)	175, 1271
FauNDI	CATATG	1 cut(s)	2380
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	393, 1706, 2263
FokI	GGATG	6 cut(s)	146, 260, 785, 878, 1160, 1481
FriOI	GRGCYC	3 cut(s)	188, 1033, 1131
Fsp4HI	GCNGC	3 cut(s)	393, 1706, 2263
FspBI	CTAG	7 cut(s)	612, 1484, 1631, 1731, 1773, 1890, 2372
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	3 cut(s)	393, 1706, 2263
GsuI	CTGGAG	2 cut(s)	1029, 1056
HaeIII	GGCC	6 cut(s)	186, 294, 1031, 2089, 2157, 2439
HapII	CCGG	4 cut(s)	315, 2138, 2312, 2440
HhaI	GCGC	1 cut(s)	907
Hin1I	GRCGYC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HincII	GTYRAC	3 cut(s)	925, 2386, 2415
HindII	GTYRAC	3 cut(s)	925, 2386, 2415
HindIII	AAGCTT	2 cut(s)	194, 917
HpaII	CCGG	4 cut(s)	315, 2138, 2312, 2440
HphI	GGTGA	5 cut(s)	278, 379, 400, 1953, 2543
Hpy166II	GTNNAC	7 cut(s)	76, 257, 925, 1933, 2386, 2415, 2521
Hpy8I	GTNNAC	7 cut(s)	76, 257, 925, 1933, 2386, 2415, 2521
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	5 cut(s)	364, 1395, 2029, 2132, 2212
HpyCH4III	ACNGT	5 cut(s)	92, 645, 1095, 1465, 2276
HpyCH4IV	ACGT	4 cut(s)	156, 161, 1710, 2562
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1037, 1381, 1575, 1711, 2127, 2445
HpySE526I	ACGT	4 cut(s)	156, 161, 1710, 2562
Hsp92I	GRCGYC	1 cut(s)	161
HspAI	GCGC	1 cut(s)	905
LguI	GCTCTTC	1 cut(s)	2217
LmnI	GCTCC	4 cut(s)	1037, 1093, 1134, 1702
Lsp1109I	GCAGC	3 cut(s)	379, 1717, 2249
LweI	GCATC	4 cut(s)	94, 561, 1386, 1696
MaeI	CTAG	7 cut(s)	612, 1484, 1631, 1731, 1773, 1890, 2372
MaeII	ACGT	4 cut(s)	156, 161, 1710, 2562
MaeIII	GTNAC	5 cut(s)	157, 475, 1345, 1885, 2453
MflI	RGATCY	8 cut(s)	25, 220, 1009, 1162, 1489, 1778, 2296, 2316
MhlI	GDGCHC	5 cut(s)	188, 315, 1033, 1131, 1871
MlsI	TGGCCA	1 cut(s)	2089
MluNI	TGGCCA	1 cut(s)	2089
MlyI	GAGTC	5 cut(s)	81, 545, 1265, 1952, 2189
MmeI	TCCRAC	3 cut(s)	75, 627, 2274
Mox20I	TGGCCA	1 cut(s)	2089
Mph1103I	ATGCAT	1 cut(s)	1689
MroXI	GAANNNNTTC	1 cut(s)	2339
MscI	TGGCCA	1 cut(s)	2089
MslI	CAYNNNNRTG	4 cut(s)	340, 1713, 2433, 2529
Msp20I	TGGCCA	1 cut(s)	2089
MspA1I	CMGCKG	2 cut(s)	392, 1693
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	4 cut(s)	315, 2138, 2312, 2440
MspR9I	CCNGG	5 cut(s)	315, 1035, 1133, 1499, 2259
Mva1269I	GAATGC	2 cut(s)	1435, 2210
MvaI	CCWGG	4 cut(s)	1035, 1133, 1499, 2259
MwoI	GCNNNNNNNGC	6 cut(s)	1037, 1381, 1575, 1711, 2127, 2445
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	2524
NdeI	CATATG	1 cut(s)	2380
NheI	GCTAGC	1 cut(s)	1772
NlaIV	GGNNCC	7 cut(s)	186, 312, 1031, 1032, 1590, 1780, 1870
NmeAIII	GCCGAG	2 cut(s)	320, 1576
NmuCI	GTSAC	2 cut(s)	157, 1885
NsiI	ATGCAT	1 cut(s)	1689
NspI	RCATGY	3 cut(s)	1518, 2248, 2461
OliI	CACNNNNGTG	1 cut(s)	2433
PaeI	GCATGC	1 cut(s)	1518
PagI	TCATGA	2 cut(s)	879, 1156
PaqCI	CACCTGC	1 cut(s)	1837
PciI	ACATGT	1 cut(s)	2244
PciSI	GCTCTTC	1 cut(s)	2217
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PctI	GAATGC	2 cut(s)	1435, 2210
PdmI	GAANNNNTTC	1 cut(s)	2339
PkrI	GCNGC	3 cut(s)	394, 1707, 2264
PleI	GAGTC	5 cut(s)	80, 544, 1265, 1952, 2188
PmaCI	CACGTG	1 cut(s)	1711
PmlI	CACGTG	1 cut(s)	1711
PpsI	GAGTC	5 cut(s)	80, 544, 1265, 1952, 2188
Ppu21I	YACGTR	2 cut(s)	157, 1711
PscI	ACATGT	1 cut(s)	2244
PsiI	TTATAA	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	1131
Psp6I	CCWGG	4 cut(s)	1033, 1131, 1497, 2257
PspCI	CACGTG	1 cut(s)	1711
PspGI	CCWGG	4 cut(s)	1033, 1131, 1497, 2257
PspN4I	GGNNCC	7 cut(s)	186, 312, 1031, 1032, 1590, 1780, 1870
PspOMI	GGGCCC	2 cut(s)	184, 1029
PspPI	GGNCC	5 cut(s)	184, 185, 1029, 1030, 2234
PsuI	RGATCY	8 cut(s)	25, 220, 1009, 1162, 1489, 1778, 2296, 2316
PvuII	CAGCTG	2 cut(s)	392, 1693
RsaI	GTAC	4 cut(s)	155, 258, 1367, 1467
RsaNI	GTAC	4 cut(s)	154, 257, 1366, 1466
RseI	CAYNNNNRTG	4 cut(s)	340, 1713, 2433, 2529
SacI	GAGCTC	1 cut(s)	1131
SapI	GCTCTTC	1 cut(s)	2217
SatI	GCNGC	3 cut(s)	393, 1706, 2263
Sau96I	GGNCC	5 cut(s)	184, 185, 1029, 1030, 2234
SchI	GAGTC	5 cut(s)	81, 545, 1265, 1952, 2189
ScrFI	CCNGG	5 cut(s)	315, 1035, 1133, 1499, 2259
SduI	GDGCHC	5 cut(s)	188, 315, 1033, 1131, 1871
SfaNI	GCATC	4 cut(s)	94, 561, 1386, 1696
SfcI	CTRYAG	3 cut(s)	88, 837, 2617
SinI	GGWCC	1 cut(s)	2234
SmiI	ATTTAAAT	1 cut(s)	1981
SmiMI	CAYNNNNRTG	4 cut(s)	340, 1713, 2433, 2529
SmlI	CTYRAG	4 cut(s)	680, 1583, 2175, 2405
SmoI	CTYRAG	4 cut(s)	680, 1583, 2175, 2405
SphI	GCATGC	1 cut(s)	1518
SsiI	CCGC	9 cut(s)	182, 365, 375, 395, 1264, 1399, 1776, 1926, 2065
SspI	AATATT	1 cut(s)	1244
SspMI	CTAG	7 cut(s)	612, 1484, 1631, 1731, 1773, 1890, 2372
SstI	GAGCTC	1 cut(s)	1131
StyD4I	CCNGG	5 cut(s)	313, 1033, 1131, 1497, 2257
StyI	CCWWGG	6 cut(s)	862, 1055, 1294, 1671, 2013, 2524
SwaI	ATTTAAAT	1 cut(s)	1981
TaaI	ACNGT	5 cut(s)	92, 645, 1095, 1465, 2276
TaiI	ACGT	4 cut(s)	159, 164, 1713, 2565
TaqI	TCGA	8 cut(s)	276, 498, 725, 1081, 1216, 1646, 2103, 2550
TaqII	GACCGA	1 cut(s)	1632
TscAI	CASTG	3 cut(s)	429, 902, 2279
TseFI	GTSAC	2 cut(s)	157, 1885
TseI	GCWGC	3 cut(s)	392, 1705, 2262
Tsp45I	GTSAC	2 cut(s)	157, 1885
TspGWI	ACGGA	3 cut(s)	274, 791, 960
TspRI	CASTG	3 cut(s)	429, 902, 2279
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	2234
XapI	RAATTY	8 cut(s)	457, 736, 787, 1740, 1976, 1982, 2007, 2096
XceI	RCATGY	3 cut(s)	1518, 2248, 2461
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2244, 2290
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	2339
XspI	CTAG	7 cut(s)	612, 1484, 1631, 1731, 1773, 1890, 2372
ZraI	GACGTC	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	1689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.