Rorug05G0243300

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004829
Physical Location & Seq
Reverse (-)
26061433 .. 26063660
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0243300.1

Sequence Viewer

Length: 213 bp
ATGCTTTTTGGTCTAGCTGCAAAAATGGCTAAAGAGCCATTAAGACTTCTGGTTATGGATTCGGTGATTTCTCTCTTTCGAGTGGATGTTACTGGAAGAGGAGAACTTGGAGATCGCCAGCAAAAACTTGCACATATGCTTTCCCTTTTAATAAAGATTGCTGAGGAATTCAATGTTGCTGTCTACATGACAAACTACGCAACTTCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

70

Amino Acids

7.88

Weight (kDa)

8.09

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 3 - 68 8.8e-22 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 167
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 76
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 4
BfaI CTAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 4
Bsp143I GATC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 154
BsrI ACTGG 1 cut(s) 97
BssMI GATC 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 4
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 119
CviAII CATG 1 cut(s) 187
CviJI RGCY 3 cut(s) 17, 29, 37
CviKI_1 RGCY 3 cut(s) 17, 29, 37
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 167
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 56, 135, 137, 188
FatI CATG 1 cut(s) 186
FauNDI CATATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 190
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 20, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 35, 78, 131
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 108
MluCI AATT 1 cut(s) 167
MnlI CCTC 2 cut(s) 92, 157
MseI TTAA 3 cut(s) 41, 149, 211
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 135
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 190
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 41, 149, 211
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 112
SetI ASST 1 cut(s) 19
SgeI CNNG 8 cut(s) 26, 62, 92, 105, 119, 130, 140, 199
Sse9I AATT 1 cut(s) 167
SspMI CTAG 1 cut(s) 14
TaqI TCGA 1 cut(s) 79
TasI AATT 1 cut(s) 167
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 3 cut(s) 41, 149, 211
Tru9I TTAA 3 cut(s) 41, 149, 211
TseI GCWGC 1 cut(s) 17
XapI RAATTY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.