Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000530.1

Orthogroup ID

OG0004829

Physical Location & Seq

Genomic Coordinates Forward (+)

125106 .. 129920

Gene Structure 4815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000530.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atggagagcggtggtctctctgaagatctctccgattccactcagcgtcccgactccgacagcgagcagcgagtttactttgttccctacagttggtggagggatgcacaagattcagttgtgggcgattcagatgggaacaaaagggttttgtgtgtggcatccccggccgcttcgtcttatggtggccctatgaagatcataaacaacattttcaactcagatctcgtcttcaatctcaggagagaggatgatgctgtgcacaatgctgaaaatgccgaggtcggtgtatcgggccgggactatgcgttggtccccggagaaatgtgggttcaggcgctcagatggcatagtgatcctaaagctgcagttaaggatggtaggagttttttggctgcagaagatggcaagaccgatgtctatcccctacaactgaggctttctgttccacgagaaacaaattcattgggagtaagaattaccaaaaaggataatgcagttgagtccttcaaaagagcctgcaaaatcttcagtttggagtctgacttgttacgcatctgggacttttccggccagactaacttattttttacaaatgacaaaaccaagtttccaagagacttgcaacggcattcagatgagatcctactggagttgcaagtttatggattgtcagattccatcaagtgtagggaagggaaaaaagatgagatggccatgcaacattctaccattggaagttcttgttctggttcttcagttgtgatgaatggttctgctggcaatatgcattccaatttcattcgttcattctggggaagttcttgtgaagctggttctttagggttgacaggattgcaaaaccttggaaatacttgtttcatgaatagctccatccagtgcttagcccatacaccaaagcttgttgactattttcttggagattatgcaagagttctgatatttgcttaccaggccttccttttgttccaatcgttttatccattctttttcagactcgaaaaatacaaaggtggaatagatggtaaggattcagaccatgcctgtgcttggcttcggcacggcatccaacaatttacaaccagagtttttgatagaagctgttctcgaggctatcaatctccctctctgatagggatggcaatggggcgggttggggatggggatcacaataccatccccatccccgtggtcattctctacccccatccccgccccaatccccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

416

Amino Acids

46.4

Weight (kDa)

6.08

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22030 AT5G22030
fragaria_vesca	FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140
malus_domestica	MD03G1159600.v1.1 MD11G1174900.v1.1
prunus_persica	Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1
pyrus_communis	pycom03g11220 pycom03g11230 pycom11g14960 pycom11g14970
rosa_chinensis	RchiOBHm_Chr5g0049121
rosa_laevigata	RLG00000034590
rosa_multiflora	Rmu_sc0000530.1_g000038 Rmu_sc0000530.1_g000039
rosa_roxburghii	Rroxscaffold_1G00032700
rosa_rugosa	Rorug05G0243300 Rorug05G0243300
rosa_samantha	Rh5AG322700 Rh5BG333300 Rh5CG358200 Rh5DG344700
rosa_wichuraiana	Rw5G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	4 cut(s)	9, 171, 1171, 1234
AclWI	GGATC	3 cut(s)	350, 637, 1194
AcoI	YGGCCR	3 cut(s)	168, 571, 714
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	3 cut(s)	42, 514, 741
AfiI	CCNNNNNNNGG	2 cut(s)	93, 1071
AgsI	TTSAA	3 cut(s)	217, 235, 511
AjnI	CCWGG	1 cut(s)	972
AluBI	AGCT	5 cut(s)	365, 833, 891, 922, 1122
AluI	AGCT	5 cut(s)	365, 833, 891, 922, 1122
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	20, 612
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	350, 637, 1194
Ama87I	CYCGRG	1 cut(s)	1128
AoxI	GGCC	6 cut(s)	168, 187, 295, 571, 714, 975
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	67, 365, 395
ApoI	RAATTY	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	1123
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	188, 295, 313
AsuC2I	CCSGG	3 cut(s)	167, 299, 318
AvaI	CYCGRG	1 cut(s)	1128
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	716
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	79, 352, 382
BceAI	ACGGC	2 cut(s)	644, 1099
BciT130I	CCWGG	1 cut(s)	974
BcnI	CCSGG	3 cut(s)	167, 299, 318
BcoDI	GTCTC	2 cut(s)	20, 612
BfmI	CTRYAG	3 cut(s)	88, 366, 396
BfoI	RGCGCY	1 cut(s)	341
BglII	AGATCT	2 cut(s)	25, 223
BisI	GCNGC	4 cut(s)	68, 171, 366, 396
BlpI	GCTNAGC	1 cut(s)	904
BlsI	GCNGC	4 cut(s)	69, 172, 367, 397
Bme1390I	CCNGG	4 cut(s)	167, 299, 318, 974
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	1128
BmgT120I	GGNCC	3 cut(s)	188, 295, 313
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	4 cut(s)	167, 299, 318, 974
BmsI	GCATC	5 cut(s)	94, 170, 244, 564, 1095
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	671
Bpu1102I	GCTNAGC	1 cut(s)	904
BpuMI	CCSGG	3 cut(s)	167, 299, 318
BsaBI	GATNNNNATC	2 cut(s)	420, 1185
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	5 cut(s)	165, 279, 316, 865, 1209
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 1071
Bse1I	ACTGG	2 cut(s)	654, 898
Bse3DI	GCAATG	1 cut(s)	1170
Bse8I	GATNNNNATC	2 cut(s)	420, 1185
BseBI	CCWGG	1 cut(s)	974
BseDI	CCNNGG	5 cut(s)	165, 279, 316, 865, 1209
BseJI	GATNNNNATC	2 cut(s)	420, 1185
BseLI	CCNNNNNNNGG	2 cut(s)	93, 1071
BseMI	GCAATG	1 cut(s)	1170
BseMII	CTCAG	5 cut(s)	56, 234, 253, 355, 425
BseNI	ACTGG	2 cut(s)	654, 898
BseSI	GKGCMC	1 cut(s)	264
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	3 cut(s)	79, 352, 382
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	6 cut(s)	170, 189, 297, 573, 716, 977
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	1128
BsiSI	CCGG	4 cut(s)	167, 298, 318, 570
BslFI	GGGAC	4 cut(s)	33, 299, 314, 575
BslI	CCNNNNNNNGG	2 cut(s)	93, 1071
BsmAI	GTCTC	2 cut(s)	20, 612
BsmFI	GGGAC	4 cut(s)	33, 299, 314, 575
BsmI	GAATGC	2 cut(s)	631, 790
BsnI	GGCC	6 cut(s)	170, 189, 297, 573, 716, 977
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	1128
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
Bsp1720I	GCTNAGC	1 cut(s)	904
BspACI	CCGC	4 cut(s)	9, 171, 1171, 1234
BspANI	GGCC	6 cut(s)	170, 189, 297, 573, 716, 977
BspCNI	CTCAG	5 cut(s)	55, 233, 252, 354, 426
BspHI	TCATGA	1 cut(s)	882
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	2 cut(s)	370, 400
BspPI	GGATC	3 cut(s)	350, 637, 1194
BspTNI	GGTCTC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	1170
BsrI	ACTGG	2 cut(s)	654, 898
BssECI	CCNNGG	5 cut(s)	165, 279, 316, 865, 1209
BssMI	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	865
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	974
Bst4CI	ACNGT	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	65, 520, 781
BstDEI	CTNAG	6 cut(s)	42, 220, 239, 341, 434, 904
BstDSI	CCRYGG	1 cut(s)	1209
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	6 cut(s)	28, 201, 226, 358, 645, 1189
BstMAI	GTCTC	2 cut(s)	20, 612
BstMBI	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 275, 346, 974
BstNI	CCWGG	1 cut(s)	974
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	165, 297, 316, 972
BstSFI	CTRYAG	3 cut(s)	88, 366, 396
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	79, 352, 382
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	3 cut(s)	25, 223, 642
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	3 cut(s)	25, 223, 642
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	6 cut(s)	170, 189, 297, 573, 716, 977
BtgI	CCRYGG	1 cut(s)	1209
BtsIMutI	CAGTG	1 cut(s)	905
Cac8I	GCNNGC	3 cut(s)	65, 520, 781
CciI	TCATGA	1 cut(s)	882
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	188, 295, 313
CseI	GACGC	1 cut(s)	35
CviAII	CATG	3 cut(s)	718, 883, 1061
DdeI	CTNAG	6 cut(s)	42, 220, 239, 341, 434, 904
DpnI	GATC	6 cut(s)	27, 200, 225, 357, 644, 1188
DpnII	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
EaeI	YGGCCR	3 cut(s)	168, 571, 714
EagI	CGGCCG	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	865
Eco147I	AGGCCT	1 cut(s)	977
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	313
Eco52I	CGGCCG	1 cut(s)	168
Eco57I	CTGAAG	3 cut(s)	42, 514, 741
Eco88I	CYCGRG	1 cut(s)	1128
EcoRII	CCWGG	1 cut(s)	972
EcoT14I	CCWWGG	1 cut(s)	865
EcoT22I	ATGCAT	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	865
FaeI	CATG	3 cut(s)	721, 886, 1064
FaqI	GGGAC	4 cut(s)	33, 299, 314, 575
FatI	CATG	3 cut(s)	717, 882, 1060
FauI	CCCGC	2 cut(s)	1164, 1241
Fnu4HI	GCNGC	4 cut(s)	68, 171, 366, 396
Fsp4HI	GCNGC	4 cut(s)	68, 171, 366, 396
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	4 cut(s)	68, 171, 366, 396
GsuI	CTGGAG	1 cut(s)	671
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	6 cut(s)	170, 189, 297, 573, 716, 977
HapII	CCGG	4 cut(s)	167, 298, 318, 570
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	3 cut(s)	721, 886, 1064
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HincII	GTYRAC	2 cut(s)	849, 928
HindII	GTYRAC	2 cut(s)	849, 928
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	9 cut(s)	35, 53, 113, 128, 503, 539, 677, 1017, 1052
HpaII	CCGG	4 cut(s)	167, 298, 318, 570
Hpy166II	GTNNAC	4 cut(s)	76, 262, 849, 928
Hpy188III	TCNNGA	4 cut(s)	50, 241, 883, 1128
Hpy8I	GTNNAC	4 cut(s)	76, 262, 849, 928
HpyAV	CCTTC	3 cut(s)	517, 689, 988
HpyCH4III	ACNGT	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 275, 346, 974
HpyF3I	CTNAG	6 cut(s)	42, 220, 239, 341, 434, 904
Hsp92II	CATG	3 cut(s)	721, 886, 1064
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
LmnI	GCTCC	1 cut(s)	896
Lsp1109I	GCAGC	3 cut(s)	79, 352, 382
LweI	GCATC	5 cut(s)	94, 170, 244, 564, 1095
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	6 cut(s)	27, 200, 225, 357, 644, 1188
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
MboII	GAAGA	6 cut(s)	35, 208, 223, 413, 520, 747
MflI	RGATCY	3 cut(s)	25, 223, 642
MhlI	GDGCHC	1 cut(s)	264
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	4 cut(s)	460, 477, 796, 1094
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	4 cut(s)	47, 512, 548, 1011
MmeI	TCCRAC	2 cut(s)	81, 1114
MnlI	CCTC	6 cut(s)	93, 241, 274, 429, 1124, 1156
Mox20I	TGGCCA	1 cut(s)	716
Mph1103I	ATGCAT	1 cut(s)	792
MroXI	GAANNNNTTC	1 cut(s)	1123
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	3 cut(s)	636, 1065, 1208
Msp20I	TGGCCA	1 cut(s)	716
MspI	CCGG	4 cut(s)	167, 298, 318, 570
MspR9I	CCNGG	4 cut(s)	167, 299, 318, 974
Mva1269I	GAATGC	2 cut(s)	631, 790
MvaI	CCWGG	1 cut(s)	974
MwoI	GCNNNNNNNGC	4 cut(s)	167, 275, 346, 974
NciI	CCSGG	3 cut(s)	167, 299, 318
NdeII	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
NlaIII	CATG	3 cut(s)	721, 886, 1064
NlaIV	GGNNCC	1 cut(s)	315
NmeAIII	GCCGAG	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	792
PaeR7I	CTCGAG	1 cut(s)	1128
PagI	TCATGA	1 cut(s)	882
PceI	AGGCCT	1 cut(s)	977
PctI	GAATGC	2 cut(s)	631, 790
PdmI	GAANNNNTTC	1 cut(s)	1123
PfeI	GAWTC	5 cut(s)	35, 113, 128, 677, 1052
PkrI	GCNGC	4 cut(s)	69, 172, 367, 397
PleI	GAGTC	4 cut(s)	47, 511, 547, 1011
PpsI	GAGTC	4 cut(s)	47, 511, 547, 1011
PshAI	GACNNNNGTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	972
PspGI	CCWGG	1 cut(s)	972
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	3 cut(s)	188, 295, 313
PstI	CTGCAG	2 cut(s)	370, 400
PsuI	RGATCY	3 cut(s)	25, 223, 642
RseI	CAYNNNNRTG	3 cut(s)	636, 1065, 1208
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	68, 171, 366, 396
Sau3AI	GATC	6 cut(s)	25, 198, 223, 355, 642, 1186
Sau96I	GGNCC	3 cut(s)	188, 295, 313
SchI	GAGTC	4 cut(s)	47, 512, 548, 1011
ScrFI	CCNGG	4 cut(s)	167, 299, 318, 974
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	8 cut(s)	285, 367, 835, 867, 893, 924, 1036, 1124
SfaNI	GCATC	5 cut(s)	94, 170, 244, 564, 1095
SfcI	CTRYAG	3 cut(s)	88, 366, 396
Sfr274I	CTCGAG	1 cut(s)	1128
SinI	GGWCC	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	1128
SmiMI	CAYNNNNRTG	3 cut(s)	636, 1065, 1208
SmlI	CTYRAG	1 cut(s)	1128
SmoI	CTYRAG	1 cut(s)	1128
Sse9I	AATT	4 cut(s)	460, 477, 796, 1094
SseBI	AGGCCT	1 cut(s)	977
SsiI	CCGC	4 cut(s)	9, 171, 1171, 1234
StuI	AGGCCT	1 cut(s)	977
StyD4I	CCNGG	4 cut(s)	165, 297, 316, 972
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	1020, 1129
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	460, 477, 796, 1094
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	5 cut(s)	35, 113, 128, 677, 1052
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	905
TseI	GCWGC	3 cut(s)	67, 365, 395
TspDTI	ATGAA	7 cut(s)	209, 453, 782, 790, 798, 871, 899
TspRI	CASTG	1 cut(s)	905
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	1128
XmnI	GAANNNNTTC	1 cut(s)	1123
Zsp2I	ATGCAT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.