Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004829

Physical Location & Seq

Genomic Coordinates Reverse (-)

46984664 .. 46995352

Gene Structure 10689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2589 bp

ATGGAGAGCGCTGGTCTCTCTGAAGATCTCTCCGATTCCACTCAGCGTCCCGACTCCGACAGCGAGCAGCGAGTTTACTTTGTTCCCTACAGTTGGTGGAGGGATGCACAAGATTCAGTTGTGGGCGATTCAGATGGGAACAAAGGGGTTTTGTGTGTGGCATCCCCGGCCGCTTCGTCTTATGGTGGCCCTATGAAGATCATCAACAACATTTTCAACTCAGATCTCGTCTTCAATCTCAGGAGAGAGGATGATGCTGTGCACAATGCTGAAAATGCCGAGGTCGGTGTATCGGGCCGGGACTATGCATTGGTCCCCGGAGAAATGTGGGTTCAGGCGCTCAGATGGCATAGTGATCCTAAAGCTGCAGTTAAGGATGTTAGGAGTTTTTCGGCTGCAGAAGATGACAAGACTGATGTCTATCCCCTACAACTGAGGCTTTCTGTTCCACGAGAAACAAATTCATTGGGTGTAAGAATTACCAAAAAGGGTTTCCCATGGAGGGAGCGCCCCTTTAGGGCACTGCTCCCACTGGGTGTGCATCCAACTCGGGGCACAAGAAGGCTAGTGACCCTTCCTCTTCCATGGCAGTATGCTTATGAAGGCGGCACAATGGATAATGCAGTTGAGTCCTTCAAAAGAGCCTGCAAAATCTTCAGTTTGGAGTCTGACTTGTTACGCATCTGGGACTTTTCCGGCCAGACTAACTTATTTTTTACAAATGACAAAACCAAGTTTCCAAGAGACTTGCAACGGCAGTCAGATGAGATCCTACTGGAGTTGCAAGTGTATGGATTGTCAGATTCCATCAAGTGCAGGGAAGGGAAAAAAGATGAGATGGCCATGCAACATTCTACCATTGGAAGTTCTTATTCTGGTTCTTCAGTTATGATGAATGGTTCTGCTGGCAATATGCATTCCAATTTCATTCGTTCATTCTGGGGAAGCTCTTGTGAAGCTGGTTCTTTAGGGTTGACAGGATTGCAAAACCTCGGAAATACTTGTTTCATGAATAGCTCCATCCAGTGCTTAGCCCATACACCAAAGCTCGTTGACTATTTTCTTGGAGATTATGCTAGAGAAATAAATCAGGAAAACCCATTGGGCATGGATGGGCAGATTGCTTTAGCATTTGGAGATCTGTTAAGGAAGTTATGGGCTCCTGGAGCAACTCCTGTGCCTCCAAGGACCTTTAAATCAAAACTTGCTCGTTTTGCTCCTCAGTTTAATGGCTTTAATCAACATGATTCACAAGAACTCCTGGCCTTTTTGTTGGATGGACTTCATGAAGATCTTAATCGTGTAAAATGCAAGCCTTATGTAGAAGTCAAGGATGGTGATGATCGACAGGATGAAGAGGTAGCTGATGAATATTGGCGAAATCATTTAGCCCGCAATGACTCTATCATTGTTGATGTGTGCCAAGGTCAATATAAATCAACATTAGTTTGTCCTGTTTGCAAAAAGGTCTCTGTTACATTTGATCCGTTTATGTACCTGTCACTACCATTACCTTCAACAATGATGCGGACAATGACTTTAACAGTTATCAACACTGATGGAAGTTCGAAGCCATCTGAATATACCATTAATGTGCCCAAGCATGGAAAGTTTGACGATCTCATCCGCAGTTTGAGTATATACAACAGTCGCATTATACGTTATCTCGAGGAGCCTGCTGATTCGTTATCCTTAATTAGAGATGGTGACCTGTTGGTTGCTTATCGGTTTATGAAAGATGTTGAGGAAGTACCTCTGGTCGTTTTCATGCATCAACAAATGGAGCAGGACATGCATGGGAAGTTGAGTTCAAGCTGGAAACCGTTTGGAATTCCTCTTGTATCAAGACTTCGTACTTCGGCAACTGGATCTGATATCTGCTATCAGTACTTAAACTTAGTTAAGCCATTTCAAATACCTGGAAAAGATTCCCAAGCACTTGTTGATAATTCACAGGGCACCGCTCCTATAGAGGCCACTGGAGCGGAGGGTACCGCACCTCCTGTTTCAGGTGGGGATGTGAACCTCTGTTATGAAAATGGGGCTGACTCACCGTTGGATTGTGAATTTCAGTTTTATATAACAGATGAAAAGGGTATTCAAAAGGAGAAAAAGATAGTAATGAATGAGATAGTCGAGAGGAAAATGTCGGAGCATTTATATGTTGCAGTATGTTGGCCAGAAAAATACGTTGAGCAGTATGATACTCGCGTTCTGAGCTCATTGCCGTTGGTTTTCAAGCCTTGCCTTTTTTCGAAAAAGCCTCAGGAGACTGTTTCTCTATATAAGTGCCTTGAAGCATTCTTGAAGGAGGAGCCTCTTGGGCCAGAAGACATGTGGACTGGTGAATTAAGCAATCGTTACATGCTTTATGCAGTTAGTAATCACTATGGAAGCATGGGTGGCGGTCATTATACTGCATTTGTCCATCATGGGGGCGATCGGTGGTATGACTTTGATGATAGCCATGTTAGCCCTGTGAGCCAGGACAAGATAAAGTCTGCTGCTGCATTGAGAGTTTCAGGCATGGATGAAATTGAGGGAAGACAGTACTTGGAGAAAGTGCTGAAGATGATTGTAACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

862

Amino Acids

96.89

Weight (kDa)

5.37

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	206 - 241	1.4e-18	UBP8-like, ubiquitin-like domain
UCH	PF00443	326 - 836	8.4e-53	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22030 AT5G22030
fragaria_vesca	FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140
malus_domestica	MD03G1159600.v1.1 MD11G1174900.v1.1
prunus_persica	Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1
pyrus_communis	pycom03g11220 pycom03g11230 pycom11g14960 pycom11g14970
rosa_chinensis	RchiOBHm_Chr5g0049121
rosa_laevigata	RLG00000034590
rosa_multiflora	Rmu_sc0000530.1_g000038 Rmu_sc0000530.1_g000039
rosa_roxburghii	Rroxscaffold_1G00032700
rosa_rugosa	Rorug05G0243300 Rorug05G0243300
rosa_samantha	Rh5AG322700 Rh5BG333300 Rh5CG358200 Rh5DG344700
rosa_wichuraiana	Rw5G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1991
AccB1I	GGYRCC	2 cut(s)	1958, 1991
AccBSI	CCGCTC	2 cut(s)	1964, 1985
AccII	CGCG	1 cut(s)	2211
AciI	CCGC	9 cut(s)	171, 606, 1393, 1528, 1627, 1962, 1985, 1995, 2406
AclWI	GGATC	4 cut(s)	350, 763, 1478, 1876
AcoI	YGGCCR	4 cut(s)	168, 697, 840, 2177
AcsI	RAATTY	3 cut(s)	460, 1830, 2066
AcuI	CTGAAG	4 cut(s)	42, 640, 867, 2588
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	6 cut(s)	1496, 1752, 1855, 1889, 1993, 2552
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	7 cut(s)	93, 502, 517, 551, 1604, 2009, 2434
AflIII	ACRYGT	1 cut(s)	2334
AjnI	CCWGG	4 cut(s)	1162, 1260, 1918, 2484
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AloI	GAACNNNNNNTCC	2 cut(s)	1792, 1824
AluBI	AGCT	8 cut(s)	365, 948, 959, 1017, 1048, 1364, 1815, 2220
AluI	AGCT	8 cut(s)	365, 948, 959, 1017, 1048, 1364, 1815, 2220
Alw21I	GWGCWC	2 cut(s)	264, 2222
Alw26I	GTCTC	4 cut(s)	20, 738, 1474, 2264
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	4 cut(s)	350, 763, 1478, 1876
Ama87I	CYCGRG	2 cut(s)	549, 1667
Aor51HI	AGCGCT	1 cut(s)	10
AoxI	GGCC	9 cut(s)	168, 187, 295, 697, 840, 1263, 1974, 2177, 2324
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	5 cut(s)	67, 365, 395, 2504, 2507
ApoI	RAATTY	3 cut(s)	460, 1830, 2066
AseI	ATTAAT	1 cut(s)	1590
Asp700I	GAANNNNTTC	1 cut(s)	1927
Asp718I	GGTACC	1 cut(s)	1991
AspLEI	GCGC	3 cut(s)	11, 340, 510
AspS9I	GGNCC	5 cut(s)	188, 295, 313, 1188, 2324
AsuC2I	CCSGG	3 cut(s)	167, 299, 318
AsuHPI	GGTGA	4 cut(s)	1349, 1718, 2043, 2357
AsuII	TTCGAA	2 cut(s)	1568, 2255
AvaI	CYCGRG	2 cut(s)	549, 1667
AvaII	GGWCC	2 cut(s)	313, 1188
AxyI	CCTNAGG	1 cut(s)	2265
BaeGI	GKGCMC	5 cut(s)	264, 523, 557, 1599, 1961
BaeI	ACNNNNGTAYC	2 cut(s)	2196, 2229
BalI	TGGCCA	2 cut(s)	842, 2179
BanI	GGYRCC	2 cut(s)	1958, 1991
BanII	GRGCYC	2 cut(s)	1162, 2222
BarI	GAAGNNNNNNTAC	2 cut(s)	1833, 1865
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	3 cut(s)	223, 2337, 2551
Bbv12I	GWGCWC	2 cut(s)	264, 2222
BbvI	GCAGC	5 cut(s)	79, 352, 382, 2491, 2494
BceAI	ACGGC	2 cut(s)	770, 2212
BcgI	CGANNNNNNTGC	4 cut(s)	530, 564, 1658, 1692
BciT130I	CCWGG	4 cut(s)	1164, 1262, 1920, 2486
BcnI	CCSGG	3 cut(s)	167, 299, 318
BcoDI	GTCTC	4 cut(s)	20, 738, 1474, 2264
BfaI	CTAG	2 cut(s)	566, 1077
BfmI	CTRYAG	4 cut(s)	88, 366, 396, 1968
BfoI	RGCGCY	3 cut(s)	12, 341, 511
BglI	GCCNNNNNGGC	1 cut(s)	2323
BglII	AGATCT	4 cut(s)	25, 223, 1138, 1291
BisI	GCNGC	7 cut(s)	68, 171, 366, 396, 607, 2505, 2508
BlpI	GCTNAGC	1 cut(s)	1030
BlsI	GCNGC	7 cut(s)	69, 172, 367, 397, 608, 2506, 2509
BmcAI	AGTACT	2 cut(s)	1889, 2552
Bme1390I	CCNGG	7 cut(s)	167, 299, 318, 1164, 1262, 1920, 2486
Bme18I	GGWCC	2 cut(s)	313, 1188
BmeT110I	CYCGRG	2 cut(s)	549, 1667
BmgT120I	GGNCC	5 cut(s)	188, 295, 313, 1188, 2324
BmiI	GGNNCC	6 cut(s)	315, 1161, 1674, 1960, 1993, 2316
BmrFI	CCNGG	7 cut(s)	167, 299, 318, 1164, 1262, 1920, 2486
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	7 cut(s)	94, 170, 244, 550, 690, 1515, 1780
BmuI	ACTGGG	1 cut(s)	542
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	3 cut(s)	223, 2337, 2551
BpmI	CTGGAG	3 cut(s)	797, 1185, 2001
Bpu1102I	GCTNAGC	1 cut(s)	1030
Bpu14I	TTCGAA	2 cut(s)	1568, 2255
BpuMI	CCSGG	3 cut(s)	167, 299, 318
BsaBI	GATNNNNATC	2 cut(s)	420, 1296
BsaI	GGTCTC	2 cut(s)	20, 1474
BsaJI	CCNNGG	8 cut(s)	165, 279, 316, 497, 584, 991, 1184, 1423
BsaXI	ACNNNNNCTCC	4 cut(s)	1242, 1272, 1984, 2014
Bsc4I	CCNNNNNNNGG	7 cut(s)	93, 502, 517, 551, 1604, 2009, 2434
Bse1I	ACTGG	6 cut(s)	537, 780, 1024, 1870, 1984, 2347
Bse21I	CCTNAGG	1 cut(s)	2265
Bse3DI	GCAATG	2 cut(s)	1402, 2222
Bse8I	GATNNNNATC	2 cut(s)	420, 1296
BseBI	CCWGG	4 cut(s)	1164, 1262, 1920, 2486
BseDI	CCNNGG	8 cut(s)	165, 279, 316, 497, 584, 991, 1184, 1423
BseJI	GATNNNNATC	2 cut(s)	420, 1296
BseLI	CCNNNNNNNGG	7 cut(s)	93, 502, 517, 551, 1604, 2009, 2434
BseMI	GCAATG	2 cut(s)	1402, 2222
BseMII	CTCAG	8 cut(s)	56, 234, 253, 355, 425, 1235, 2207, 2279
BseNI	ACTGG	6 cut(s)	537, 780, 1024, 1870, 1984, 2347
BseRI	GAGGAG	3 cut(s)	1209, 1685, 2327
BseSI	GKGCMC	5 cut(s)	264, 523, 557, 1599, 1961
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	5 cut(s)	79, 352, 382, 2491, 2494
BsgI	GTGCAG	1 cut(s)	835
Bsh1236I	CGCG	1 cut(s)	2211
Bsh1285I	CGRYCG	2 cut(s)	171, 2443
BshFI	GGCC	9 cut(s)	170, 189, 297, 699, 842, 1265, 1976, 2179, 2326
BshNI	GGYRCC	2 cut(s)	1958, 1991
BsiEI	CGRYCG	2 cut(s)	171, 2443
BsiHKAI	GWGCWC	2 cut(s)	264, 2222
BsiHKCI	CYCGRG	2 cut(s)	549, 1667
BsiSI	CCGG	4 cut(s)	167, 298, 318, 696
BslFI	GGGAC	4 cut(s)	33, 299, 314, 701
BslI	CCNNNNNNNGG	7 cut(s)	93, 502, 517, 551, 1604, 2009, 2434
BsmAI	GTCTC	4 cut(s)	20, 738, 1474, 2264
BsmFI	GGGAC	4 cut(s)	33, 299, 314, 701
BsmI	GAATGC	2 cut(s)	916, 2300
BsnI	GGCC	9 cut(s)	170, 189, 297, 699, 842, 1265, 1976, 2179, 2326
Bso31I	GGTCTC	2 cut(s)	20, 1474
BsoBI	CYCGRG	2 cut(s)	549, 1667
Bsp119I	TTCGAA	2 cut(s)	1568, 2255
Bsp1286I	GDGCHC	7 cut(s)	264, 523, 557, 1162, 1599, 1961, 2222
Bsp1720I	GCTNAGC	1 cut(s)	1030
Bsp19I	CCATGG	2 cut(s)	497, 584
BspACI	CCGC	9 cut(s)	171, 606, 1393, 1528, 1627, 1962, 1985, 1995, 2406
BspANI	GGCC	9 cut(s)	170, 189, 297, 699, 842, 1265, 1976, 2179, 2326
BspCNI	CTCAG	8 cut(s)	55, 233, 252, 354, 426, 1234, 2208, 2278
BspFNI	CGCG	1 cut(s)	2211
BspHI	TCATGA	2 cut(s)	1008, 1285
BspLI	GGNNCC	6 cut(s)	315, 1161, 1674, 1960, 1993, 2316
BspMAI	CTGCAG	2 cut(s)	370, 400
BspPI	GGATC	4 cut(s)	350, 763, 1478, 1876
BspT104I	TTCGAA	2 cut(s)	1568, 2255
BspT107I	GGYRCC	2 cut(s)	1958, 1991
BspTNI	GGTCTC	2 cut(s)	20, 1474
BsrBI	CCGCTC	2 cut(s)	1964, 1985
BsrDI	GCAATG	2 cut(s)	1402, 2222
BsrI	ACTGG	6 cut(s)	537, 780, 1024, 1870, 1984, 2347
BssECI	CCNNGG	8 cut(s)	165, 279, 316, 497, 584, 991, 1184, 1423
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	4 cut(s)	497, 584, 1184, 1423
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	4 cut(s)	1164, 1262, 1920, 2486
Bst4CI	ACNGT	7 cut(s)	92, 1546, 1649, 1824, 2055, 2275, 2550
Bst6I	CTCTTC	2 cut(s)	585, 1350
BstAPI	GCANNNNNTGC	1 cut(s)	1792
BstBI	TTCGAA	2 cut(s)	1568, 2255
BstC8I	GCNNGC	6 cut(s)	65, 646, 907, 1313, 1393, 1677
BstDSI	CCRYGG	2 cut(s)	497, 584
BstEII	GGTNACC	1 cut(s)	1706
BstENI	CCTNNNNNAGG	1 cut(s)	2007
BstFNI	CGCG	1 cut(s)	2211
BstH2I	RGCGCY	3 cut(s)	12, 341, 511
BstHHI	GCGC	3 cut(s)	11, 340, 510
BstMAI	GTCTC	4 cut(s)	20, 738, 1474, 2264
BstMCI	CGRYCG	2 cut(s)	171, 2443
BstNI	CCWGG	4 cut(s)	1164, 1262, 1920, 2486
BstNSI	RCATGY	3 cut(s)	1795, 2338, 2368
BstPAI	GACNNNNGTC	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	1706
BstSCI	CCNGG	7 cut(s)	165, 297, 316, 1162, 1260, 1918, 2484
BstSFI	CTRYAG	4 cut(s)	88, 366, 396, 1968
BstSLI	GKGCMC	5 cut(s)	264, 523, 557, 1599, 1961
BstUI	CGCG	1 cut(s)	2211
BstV1I	GCAGC	5 cut(s)	79, 352, 382, 2491, 2494
BstV2I	GAAGAC	3 cut(s)	223, 2337, 2551
BstX2I	RGATCY	6 cut(s)	25, 223, 768, 1138, 1291, 1868
BstYI	RGATCY	6 cut(s)	25, 223, 768, 1138, 1291, 1868
BstZI	CGGCCG	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	2265
BsuRI	GGCC	9 cut(s)	170, 189, 297, 699, 842, 1265, 1976, 2179, 2326
BtgI	CCRYGG	2 cut(s)	497, 584
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	5 cut(s)	521, 530, 1031, 1554, 1977
Cac8I	GCNNGC	6 cut(s)	65, 646, 907, 1313, 1393, 1677
CciI	TCATGA	2 cut(s)	1008, 1285
CfoI	GCGC	3 cut(s)	11, 340, 510
Cfr13I	GGNCC	5 cut(s)	188, 295, 313, 1188, 2324
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	6 cut(s)	1495, 1751, 1854, 1888, 1992, 2551
CviQI	GTAC	6 cut(s)	1495, 1751, 1854, 1888, 1992, 2551
DraI	TTTAAA	1 cut(s)	1195
DraIII	CACNNNGTG	1 cut(s)	536
EaeI	YGGCCR	4 cut(s)	168, 697, 840, 2177
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	585, 1350
EarI	CTCTTC	2 cut(s)	585, 1350
Ecl136II	GAGCTC	1 cut(s)	2220
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	4 cut(s)	497, 584, 1184, 1423
Eco24I	GRGCYC	2 cut(s)	1162, 2222
Eco31I	GGTCTC	2 cut(s)	20, 1474
Eco32I	GATATC	1 cut(s)	1876
Eco47I	GGWCC	2 cut(s)	313, 1188
Eco47III	AGCGCT	1 cut(s)	10
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	2220
Eco57I	CTGAAG	4 cut(s)	42, 640, 867, 2588
Eco81I	CCTNAGG	1 cut(s)	2265
Eco88I	CYCGRG	2 cut(s)	549, 1667
Eco91I	GGTNACC	1 cut(s)	1706
EcoICRI	GAGCTC	1 cut(s)	2220
EcoNI	CCTNNNNNAGG	1 cut(s)	2007
EcoO109I	RGGNCCY	1 cut(s)	1188
EcoO65I	GGTNACC	1 cut(s)	1706
EcoRI	GAATTC	1 cut(s)	1830
EcoRII	CCWGG	4 cut(s)	1162, 1260, 1918, 2484
EcoRV	GATATC	1 cut(s)	1876
EcoT14I	CCWWGG	4 cut(s)	497, 584, 1184, 1423
EcoT22I	ATGCAT	4 cut(s)	310, 918, 1773, 1797
EcoT38I	GRGCYC	2 cut(s)	1162, 2222
ErhI	CCWWGG	4 cut(s)	497, 584, 1184, 1423
FaqI	GGGAC	4 cut(s)	33, 299, 314, 701
FauI	CCCGC	1 cut(s)	1400
Fnu4HI	GCNGC	7 cut(s)	68, 171, 366, 396, 607, 2505, 2508
FriOI	GRGCYC	2 cut(s)	1162, 2222
Fsp4HI	GCNGC	7 cut(s)	68, 171, 366, 396, 607, 2505, 2508
FspBI	CTAG	2 cut(s)	566, 1077
GlaI	GCGC	3 cut(s)	10, 339, 509
GluI	GCNGC	7 cut(s)	68, 171, 366, 396, 607, 2505, 2508
GsuI	CTGGAG	3 cut(s)	797, 1185, 2001
HaeII	RGCGCY	3 cut(s)	12, 341, 511
HaeIII	GGCC	9 cut(s)	170, 189, 297, 699, 842, 1265, 1976, 2179, 2326
HapII	CCGG	4 cut(s)	167, 298, 318, 696
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	3 cut(s)	11, 340, 510
Hin6I	GCGC	3 cut(s)	9, 338, 508
HinP1I	GCGC	3 cut(s)	9, 338, 508
HincII	GTYRAC	2 cut(s)	975, 1054
HindII	GTYRAC	2 cut(s)	975, 1054
HpaII	CCGG	4 cut(s)	167, 298, 318, 696
HphI	GGTGA	4 cut(s)	1349, 1718, 2043, 2357
Hpy166II	GTNNAC	6 cut(s)	76, 262, 975, 1054, 2023, 2340
Hpy8I	GTNNAC	6 cut(s)	76, 262, 975, 1054, 2023, 2340
HpyAV	CCTTC	7 cut(s)	555, 584, 596, 643, 815, 1524, 2302
HpyCH4III	ACNGT	7 cut(s)	92, 1546, 1649, 1824, 2055, 2275, 2550
HpyCH4IV	ACGT	2 cut(s)	1660, 2190
HpySE526I	ACGT	2 cut(s)	1660, 2190
HspAI	GCGC	3 cut(s)	9, 338, 508
KpnI	GGTACC	1 cut(s)	1995
Lsp1109I	GCAGC	5 cut(s)	79, 352, 382, 2491, 2494
LweI	GCATC	7 cut(s)	94, 170, 244, 550, 690, 1515, 1780
MaeI	CTAG	2 cut(s)	566, 1077
MaeII	ACGT	2 cut(s)	1660, 2190
MaeIII	GTNAC	7 cut(s)	568, 675, 1474, 1500, 1706, 2360, 2578
MbiI	CCGCTC	2 cut(s)	1964, 1985
MflI	RGATCY	6 cut(s)	25, 223, 768, 1138, 1291, 1868
MhlI	GDGCHC	7 cut(s)	264, 523, 557, 1162, 1599, 1961, 2222
MlsI	TGGCCA	2 cut(s)	842, 2179
MluCI	AATT	9 cut(s)	460, 477, 922, 1695, 1830, 1948, 2066, 2348, 2535
MluNI	TGGCCA	2 cut(s)	842, 2179
MlyI	GAGTC	5 cut(s)	47, 638, 674, 1394, 2042
MmeI	TCCRAC	5 cut(s)	81, 569, 1254, 2037, 2130
Mox20I	TGGCCA	2 cut(s)	842, 2179
Mph1103I	ATGCAT	4 cut(s)	310, 918, 1773, 1797
MroXI	GAANNNNTTC	1 cut(s)	1927
MscI	TGGCCA	2 cut(s)	842, 2179
MslI	CAYNNNNRTG	2 cut(s)	1592, 2160
Msp20I	TGGCCA	2 cut(s)	842, 2179
MspI	CCGG	4 cut(s)	167, 298, 318, 696
MspR9I	CCNGG	7 cut(s)	167, 299, 318, 1164, 1262, 1920, 2486
Mva1269I	GAATGC	2 cut(s)	916, 2300
MvaI	CCWGG	4 cut(s)	1164, 1262, 1920, 2486
MvnI	CGCG	1 cut(s)	2211
NciI	CCSGG	3 cut(s)	167, 299, 318
NcoI	CCATGG	2 cut(s)	497, 584
NlaIV	GGNNCC	6 cut(s)	315, 1161, 1674, 1960, 1993, 2316
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	3 cut(s)	568, 1500, 1706
NsiI	ATGCAT	4 cut(s)	310, 918, 1773, 1797
NspI	RCATGY	3 cut(s)	1795, 2338, 2368
NspV	TTCGAA	2 cut(s)	1568, 2255
PaeR7I	CTCGAG	1 cut(s)	1667
PagI	TCATGA	2 cut(s)	1008, 1285
PciI	ACATGT	1 cut(s)	2334
PcsI	WCGNNNNNNNCGW	1 cut(s)	1657
PctI	GAATGC	2 cut(s)	916, 2300
PdmI	GAANNNNTTC	1 cut(s)	1927
PfeI	GAWTC	7 cut(s)	35, 113, 128, 803, 1247, 1682, 1928
PfoI	TCCNGGA	1 cut(s)	1162
PkrI	GCNGC	7 cut(s)	69, 172, 367, 397, 608, 2506, 2509
Ple19I	CGATCG	1 cut(s)	2443
PleI	GAGTC	5 cut(s)	47, 637, 673, 1394, 2042
PpsI	GAGTC	5 cut(s)	47, 637, 673, 1394, 2042
PpuMI	RGGWCCY	1 cut(s)	1188
PscI	ACATGT	1 cut(s)	2334
PshAI	GACNNNNGTC	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	1590
Psp124BI	GAGCTC	1 cut(s)	2222
Psp5II	RGGWCCY	1 cut(s)	1188
Psp6I	CCWGG	4 cut(s)	1162, 1260, 1918, 2484
PspEI	GGTNACC	1 cut(s)	1706
PspGI	CCWGG	4 cut(s)	1162, 1260, 1918, 2484
PspN4I	GGNNCC	6 cut(s)	315, 1161, 1674, 1960, 1993, 2316
PspPI	GGNCC	5 cut(s)	188, 295, 313, 1188, 2324
PspPPI	RGGWCCY	1 cut(s)	1188
PstI	CTGCAG	2 cut(s)	370, 400
PsuI	RGATCY	6 cut(s)	25, 223, 768, 1138, 1291, 1868
PvuI	CGATCG	1 cut(s)	2443
RsaI	GTAC	6 cut(s)	1496, 1752, 1855, 1889, 1993, 2552
RsaNI	GTAC	6 cut(s)	1495, 1751, 1854, 1888, 1992, 2551
RseI	CAYNNNNRTG	2 cut(s)	1592, 2160
SacI	GAGCTC	1 cut(s)	2222
SatI	GCNGC	7 cut(s)	68, 171, 366, 396, 607, 2505, 2508
Sau96I	GGNCC	5 cut(s)	188, 295, 313, 1188, 2324
ScaI	AGTACT	2 cut(s)	1889, 2552
SchI	GAGTC	5 cut(s)	47, 638, 674, 1394, 2042
ScrFI	CCNGG	7 cut(s)	167, 299, 318, 1164, 1262, 1920, 2486
SduI	GDGCHC	7 cut(s)	264, 523, 557, 1162, 1599, 1961, 2222
SfaNI	GCATC	7 cut(s)	94, 170, 244, 550, 690, 1515, 1780
SfcI	CTRYAG	4 cut(s)	88, 366, 396, 1968
Sfr274I	CTCGAG	1 cut(s)	1667
SfuI	TTCGAA	2 cut(s)	1568, 2255
SinI	GGWCC	2 cut(s)	313, 1188
SlaI	CTCGAG	1 cut(s)	1667
SmiMI	CAYNNNNRTG	2 cut(s)	1592, 2160
SmlI	CTYRAG	1 cut(s)	1667
SmoI	CTYRAG	1 cut(s)	1667
Sse9I	AATT	9 cut(s)	460, 477, 922, 1695, 1830, 1948, 2066, 2348, 2535
SsiI	CCGC	9 cut(s)	171, 606, 1393, 1528, 1627, 1962, 1985, 1995, 2406
SspI	AATATT	1 cut(s)	1373
SspMI	CTAG	2 cut(s)	566, 1077
SstI	GAGCTC	1 cut(s)	2222
StyD4I	CCNGG	7 cut(s)	165, 297, 316, 1162, 1260, 1918, 2484
StyI	CCWWGG	4 cut(s)	497, 584, 1184, 1423
TaaI	ACNGT	7 cut(s)	92, 1546, 1649, 1824, 2055, 2275, 2550
TaiI	ACGT	2 cut(s)	1663, 2193
TaqI	TCGA	5 cut(s)	1345, 1568, 1668, 2136, 2255
TasI	AATT	9 cut(s)	460, 477, 922, 1695, 1830, 1948, 2066, 2348, 2535
TatI	WGTACW	2 cut(s)	1887, 2550
TauI	GCSGC	2 cut(s)	173, 609
TfiI	GAWTC	7 cut(s)	35, 113, 128, 803, 1247, 1682, 1928
TscAI	CASTG	5 cut(s)	528, 537, 1031, 1561, 1984
TseFI	GTSAC	3 cut(s)	568, 1500, 1706
TseI	GCWGC	5 cut(s)	67, 365, 395, 2504, 2507
Tsp45I	GTSAC	3 cut(s)	568, 1500, 1706
TspGWI	ACGGA	1 cut(s)	1476
TspRI	CASTG	5 cut(s)	528, 537, 1031, 1561, 1984
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	313, 1188
VspI	ATTAAT	1 cut(s)	1590
XagI	CCTNNNNNAGG	1 cut(s)	2007
XapI	RAATTY	3 cut(s)	460, 1830, 2066
XceI	RCATGY	3 cut(s)	1795, 2338, 2368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2334
XhoI	CTCGAG	1 cut(s)	1667
XmnI	GAANNNNTTC	1 cut(s)	1927
XspI	CTAG	2 cut(s)	566, 1077
ZrmI	AGTACT	2 cut(s)	1889, 2552
Zsp2I	ATGCAT	4 cut(s)	310, 918, 1773, 1797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.