MD03G1200600.v1.1

Serine arginine repetitive matrix protein 2-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0005908
Physical Location & Seq
Reverse (-)
27416304 .. 27419652
3349 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1200600.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGACAGTGTCGTTGAAACAAAATTTGCCCATGATCCAGAGAGGACTCAGTCTCCATTCAAGGACAATAACCAATACCAAGGAGTCTCCACTAACAGCAAATGCAAACCGGGGAGCTGGAGAGCAGAGCGAATCTGACATGGGTAGGCCAATTGATGCTCCGCATGGTGGGGGAGAGAACAGATTTTATTCAGAGAGATCACAATATGAATATGGTGAACCCAAGAAAGATGACTCCCTAGGTGAGAACAGAAACCCTGGCATATATCATTCTGATCTTCATTCTCCCAAAAGAACTGCCGAAGGATCAGTATCTCCTAAGACAAAGAGACAAATGTCAATTTCACCTGAAGGCTCGCCTTCTCATCAAGGTTCTCAAGCACAAATGTCACATTGCCAGAAAATTTCTTCCCCTGAATTGCATAAAGGAATTTCACTTGATCAATTATCTCCGACCAGGCAAAGTTCTGCTTCAACACAGGGCATTCAGCGCCAGTCCCAGCATAAGGATAGCTCTTCTCACAAGCATATAACTTTGCCCCCAAGGTCCCACCGCTCACCCCCAAGGTCCCATCGCTCACCACCAAAGTACCGGAGAAGGGATAGATCAGAGTCACGATCACCCATTCGACACAGAGATTCCTATGGTTCCCAGAGGGATTACCGTGACCGAACTCGATCACGGTCCCCATATTCAAGAGTCCATCATAGGTCCACAAGGGAAAGGCATTCTCCAAGGCGAAGGTCCCCTTTTCCAGAATATCATTCTCCTCACCGATCTCCTAGAAGGAGACCTTGGTCACCACCTCCTAATAGGAAAACTGGATTAGGGAAACCTGGGAGAAATTTATTTGTTGCAGGTTTTAGCTTCGCGACTACAGAGAGAGATCTGGAAAGGAAGTTTTCTAGGTATGGCAGAGTACAACATGTTCGGATCGTTAGAGACAAGAGGTCGGGAGATTCGCGTGGATTTGGATTTTTGACGCTGGAAACGGATGAAGATGCTGATGCAGCTATCAGAGCTCTAGATGAGACTGAGTGGAATGGTCGGATTATTCTTGTCGAAAAATCCAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

360

Amino Acids

40.98

Weight (kDa)

10.79

Isoelectric Point (pI)

87.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 283 - 352 1.5e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 848
AccBSI CCGCTC 1 cut(s) 555
AccII CGCG 2 cut(s) 872, 964
AciI CCGC 2 cut(s) 161, 553
AclWI GGATC 3 cut(s) 28, 313, 941
AcsI RAATTY 4 cut(s) 22, 402, 429, 844
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 590, 921
AfiI CCNNNNNNNGG 3 cut(s) 167, 505, 598
AflIII ACRYGT 1 cut(s) 925
AgsI TTSAA 4 cut(s) 16, 60, 474, 696
AhdI GACNNNNNGTC 1 cut(s) 949
AjnI CCWGG 3 cut(s) 256, 455, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 778, 810
AluBI AGCT 5 cut(s) 116, 513, 867, 1013, 1022
AluI AGCT 5 cut(s) 116, 513, 867, 1013, 1022
Alw21I GWGCWC 1 cut(s) 1024
Alw26I GTCTC 6 cut(s) 56, 90, 322, 784, 936, 1025
AlwI GGATC 3 cut(s) 28, 313, 941
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 4 cut(s) 22, 402, 429, 844
AspA2I CCTAGG 1 cut(s) 238
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 5 cut(s) 546, 567, 684, 711, 744
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 8 cut(s) 227, 254, 336, 549, 570, 612, 764, 792
AvaII GGWCC 5 cut(s) 546, 567, 684, 711, 744
AvrII CCTAGG 1 cut(s) 238
BaeI ACNNNNGTAYC 2 cut(s) 572, 605
BanII GRGCYC 1 cut(s) 1024
Bbv12I GWGCWC 1 cut(s) 1024
BbvI GCAGC 1 cut(s) 1022
BccI CCATC 2 cut(s) 579, 711
BciT130I CCWGG 3 cut(s) 258, 457, 837
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 6 cut(s) 56, 90, 322, 784, 936, 1025
BfaI CTAG 4 cut(s) 239, 783, 906, 1025
BfmI CTRYAG 1 cut(s) 876
BfoI RGCGCY 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 848
BglII AGATCT 1 cut(s) 886
BisI GCNGC 1 cut(s) 1011
BlnI CCTAGG 1 cut(s) 238
BlsI GCNGC 1 cut(s) 1012
Bme1390I CCNGG 4 cut(s) 110, 258, 457, 837
Bme18I GGWCC 5 cut(s) 546, 567, 684, 711, 744
BmeRI GACNNNNNGTC 1 cut(s) 949
BmgT120I GGNCC 5 cut(s) 546, 567, 684, 711, 744
BmiI GGNNCC 5 cut(s) 548, 569, 649, 686, 746
BmrFI CCNGG 4 cut(s) 110, 258, 457, 837
BmsI GCATC 3 cut(s) 145, 991, 997
BoxI GACNNNNGTC 2 cut(s) 334, 796
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 9 cut(s) 78, 109, 238, 256, 542, 563, 734, 794, 836
BsaWI WCCGGW 1 cut(s) 591
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 505, 598
Bse1I ACTGG 2 cut(s) 493, 826
Bse3DI GCAATG 1 cut(s) 391
Bse8I GATNNNNATC 1 cut(s) 310
BseBI CCWGG 3 cut(s) 258, 457, 837
BseDI CCNNGG 9 cut(s) 78, 109, 238, 256, 542, 563, 734, 794, 836
BseGI GGATG 1 cut(s) 1000
BseJI GATNNNNATC 1 cut(s) 310
BseLI CCNNNNNNNGG 3 cut(s) 167, 505, 598
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 2 cut(s) 61, 1026
BseNI ACTGG 2 cut(s) 493, 826
BseRI GAGGAG 1 cut(s) 759
BseXI GCAGC 1 cut(s) 1022
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 2 cut(s) 872, 964
BshFI GGCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 1024
BsiSI CCGG 2 cut(s) 109, 592
BslFI GGGAC 5 cut(s) 481, 532, 553, 670, 730
BslI CCNNNNNNNGG 3 cut(s) 167, 505, 598
BsmAI GTCTC 6 cut(s) 56, 90, 322, 784, 936, 1025
BsmFI GGGAC 5 cut(s) 481, 532, 553, 670, 730
BsmI GAATGC 2 cut(s) 483, 727
BsnI GGCC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 784
Bsp1286I GDGCHC 1 cut(s) 1024
Bsp68I TCGCGA 1 cut(s) 872
BspACI CCGC 2 cut(s) 161, 553
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 60, 1027
BspFNI CGCG 2 cut(s) 872, 964
BspLI GGNNCC 5 cut(s) 548, 569, 649, 686, 746
BspMI ACCTGC 1 cut(s) 848
BspPI GGATC 3 cut(s) 28, 313, 941
BspQI GCTCTTC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 784
BsrBI CCGCTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 2 cut(s) 493, 826
BssECI CCNNGG 9 cut(s) 78, 109, 238, 256, 542, 563, 734, 794, 836
BssT1I CCWWGG 6 cut(s) 78, 238, 542, 563, 734, 794
Bst2UI CCWGG 3 cut(s) 258, 457, 837
Bst4CI ACNGT 3 cut(s) 7, 665, 684
Bst6I CTCTTC 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 47, 318, 1035
BstEII GGTNACC 1 cut(s) 798
BstF5I GGATG 1 cut(s) 1000
BstFNI CGCG 2 cut(s) 872, 964
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 1 cut(s) 492
BstMAI GTCTC 6 cut(s) 56, 90, 322, 784, 936, 1025
BstMWI GCNNNNNNNGC 3 cut(s) 489, 1010, 1019
BstNI CCWGG 3 cut(s) 258, 457, 837
BstNSI RCATGY 1 cut(s) 929
BstPAI GACNNNNGTC 2 cut(s) 334, 796
BstPI GGTNACC 1 cut(s) 798
BstSCI CCNGG 4 cut(s) 108, 256, 455, 835
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 2 cut(s) 872, 964
BstV1I GCAGC 1 cut(s) 1022
BstX2I RGATCY 1 cut(s) 886
BstYI RGATCY 1 cut(s) 886
BsuRI GGCC 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 1 cut(s) 1000
BtsIMutI CAGTG 1 cut(s) 12
BtuMI TCGCGA 1 cut(s) 872
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 1 cut(s) 356
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 5 cut(s) 546, 567, 684, 711, 744
CseI GACGC 1 cut(s) 991
Csp6I GTAC 2 cut(s) 589, 920
CviAII CATG 4 cut(s) 31, 139, 164, 926
CviJI RGCY 7 cut(s) 116, 148, 354, 513, 867, 1013, 1022
CviKI_1 RGCY 7 cut(s) 116, 148, 354, 513, 867, 1013, 1022
CviQI GTAC 2 cut(s) 589, 920
DdeI CTNAG 3 cut(s) 47, 318, 1035
DriI GACNNNNNGTC 1 cut(s) 949
Eam1104I CTCTTC 1 cut(s) 520
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 1 cut(s) 520
Ecl136II GAGCTC 1 cut(s) 1022
Eco130I CCWWGG 6 cut(s) 78, 238, 542, 563, 734, 794
Eco24I GRGCYC 1 cut(s) 1024
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 5 cut(s) 546, 567, 684, 711, 744
Eco53kI GAGCTC 1 cut(s) 1022
Eco57I CTGAAG 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 798
EcoICRI GAGCTC 1 cut(s) 1022
EcoO109I RGGNCCY 3 cut(s) 546, 567, 744
EcoO65I GGTNACC 1 cut(s) 798
EcoRII CCWGG 3 cut(s) 256, 455, 835
EcoT14I CCWWGG 6 cut(s) 78, 238, 542, 563, 734, 794
EcoT38I GRGCYC 1 cut(s) 1024
ErhI CCWWGG 6 cut(s) 78, 238, 542, 563, 734, 794
FaeI CATG 4 cut(s) 34, 142, 167, 929
FalI AAGNNNNNCTT 6 cut(s) 454, 486, 733, 765, 778, 810
FaqI GGGAC 5 cut(s) 481, 532, 553, 670, 730
FatI CATG 4 cut(s) 30, 138, 163, 925
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 1011
FokI GGATG 1 cut(s) 1007
FriOI GRGCYC 1 cut(s) 1024
Fsp4HI GCNGC 1 cut(s) 1011
FspBI CTAG 4 cut(s) 239, 783, 906, 1025
GlaI GCGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 1011
GsaI CCCAGC 1 cut(s) 502
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 1 cut(s) 148
HapII CCGG 2 cut(s) 109, 592
HgaI GACGC 1 cut(s) 991
HhaI GCGC 1 cut(s) 492
Hin1II CATG 4 cut(s) 34, 142, 167, 929
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 8 cut(s) 45, 83, 131, 233, 611, 638, 699, 959
HpaII CCGG 2 cut(s) 109, 592
HphI GGTGA 8 cut(s) 227, 254, 336, 549, 570, 612, 764, 792
Hpy166II GTNNAC 2 cut(s) 218, 714
Hpy188I TCNGA 8 cut(s) 136, 193, 274, 453, 610, 933, 1019, 1050
Hpy188III TCNNGA 8 cut(s) 37, 615, 696, 755, 871, 890, 954, 1025
Hpy8I GTNNAC 2 cut(s) 218, 714
HpyAV CCTTC 6 cut(s) 296, 344, 369, 591, 735, 780
HpyCH4III ACNGT 3 cut(s) 7, 665, 684
HpyCH4V TGCA 4 cut(s) 104, 421, 857, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 489, 1010, 1019
HpyF3I CTNAG 3 cut(s) 47, 318, 1035
Hsp92II CATG 4 cut(s) 34, 142, 167, 929
HspAI GCGC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 439
LguI GCTCTTC 1 cut(s) 520
LmnI GCTCC 2 cut(s) 113, 163
Lsp1109I GCAGC 1 cut(s) 1022
LweI GCATC 3 cut(s) 145, 991, 997
MaeI CTAG 4 cut(s) 239, 783, 906, 1025
MaeIII GTNAC 4 cut(s) 387, 612, 665, 798
MbiI CCGCTC 1 cut(s) 555
MboII GAAGA 4 cut(s) 269, 399, 507, 1010
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 1 cut(s) 1024
MluCI AATT 8 cut(s) 22, 150, 339, 402, 416, 429, 443, 844
MlyI GAGTC 5 cut(s) 39, 92, 227, 620, 708
MmeI TCCRAC 2 cut(s) 476, 1028
MnlI CCTC 5 cut(s) 35, 648, 780, 816, 942
MspI CCGG 2 cut(s) 109, 592
MspR9I CCNGG 4 cut(s) 110, 258, 457, 837
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 2 cut(s) 483, 727
MvaI CCWGG 3 cut(s) 258, 457, 837
MvnI CGCG 2 cut(s) 872, 964
MwoI GCNNNNNNNGC 3 cut(s) 489, 1010, 1019
NciI CCSGG 1 cut(s) 110
NlaIII CATG 4 cut(s) 34, 142, 167, 929
NlaIV GGNNCC 5 cut(s) 548, 569, 649, 686, 746
NmuCI GTSAC 4 cut(s) 387, 612, 665, 798
NruI TCGCGA 1 cut(s) 872
NspI RCATGY 1 cut(s) 929
PciI ACATGT 1 cut(s) 925
PciSI GCTCTTC 1 cut(s) 520
PctI GAATGC 2 cut(s) 483, 727
PfeI GAWTC 3 cut(s) 131, 638, 959
PflFI GACNNNGTC 2 cut(s) 7, 48
PkrI GCNGC 1 cut(s) 1012
PleI GAGTC 5 cut(s) 39, 91, 227, 619, 707
PpsI GAGTC 5 cut(s) 39, 91, 227, 619, 707
PpuMI RGGWCCY 3 cut(s) 546, 567, 744
PscI ACATGT 1 cut(s) 925
PshAI GACNNNNGTC 2 cut(s) 334, 796
Psp124BI GAGCTC 1 cut(s) 1024
Psp5II RGGWCCY 3 cut(s) 546, 567, 744
Psp6I CCWGG 3 cut(s) 256, 455, 835
PspEI GGTNACC 1 cut(s) 798
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 3 cut(s) 256, 455, 835
PspN4I GGNNCC 5 cut(s) 548, 569, 649, 686, 746
PspPI GGNCC 5 cut(s) 546, 567, 684, 711, 744
PspPPI RGGWCCY 3 cut(s) 546, 567, 744
PsrI GAACNNNNNNTAC 2 cut(s) 912, 944
PsuI RGATCY 1 cut(s) 886
PsyI GACNNNGTC 2 cut(s) 7, 48
RruI TCGCGA 1 cut(s) 872
RsaI GTAC 2 cut(s) 590, 921
RsaNI GTAC 2 cut(s) 589, 920
SacI GAGCTC 1 cut(s) 1024
SapI GCTCTTC 1 cut(s) 520
SatI GCNGC 1 cut(s) 1011
Sau96I GGNCC 5 cut(s) 546, 567, 684, 711, 744
SchI GAGTC 5 cut(s) 39, 92, 227, 620, 708
ScrFI CCNGG 4 cut(s) 110, 258, 457, 837
SduI GDGCHC 1 cut(s) 1024
SfaNI GCATC 3 cut(s) 145, 991, 997
SfcI CTRYAG 1 cut(s) 876
SinI GGWCC 5 cut(s) 546, 567, 684, 711, 744
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
Sse9I AATT 8 cut(s) 22, 150, 339, 402, 416, 429, 443, 844
SsiI CCGC 2 cut(s) 161, 553
SspMI CTAG 4 cut(s) 239, 783, 906, 1025
SstI GAGCTC 1 cut(s) 1024
StyD4I CCNGG 4 cut(s) 108, 256, 455, 835
StyI CCWWGG 6 cut(s) 78, 238, 542, 563, 734, 794
TaaI ACNGT 3 cut(s) 7, 665, 684
TaqI TCGA 3 cut(s) 628, 676, 1062
TaqII GACCGA 1 cut(s) 684
TasI AATT 8 cut(s) 22, 150, 339, 402, 416, 429, 443, 844
TatI WGTACW 1 cut(s) 919
TfiI GAWTC 3 cut(s) 131, 638, 959
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 4 cut(s) 387, 612, 665, 798
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 4 cut(s) 387, 612, 665, 798
TspDTI ATGAA 3 cut(s) 222, 269, 1011
TspGWI ACGGA 1 cut(s) 1007
TspRI CASTG 1 cut(s) 12
Tth111I GACNNNGTC 2 cut(s) 7, 48
VpaK11BI GGWCC 5 cut(s) 546, 567, 684, 711, 744
XapI RAATTY 4 cut(s) 22, 402, 429, 844
XbaI TCTAGA 1 cut(s) 1024
XceI RCATGY 1 cut(s) 929
XmaJI CCTAGG 1 cut(s) 238
XspI CTAG 4 cut(s) 239, 783, 906, 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.