Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005908

Physical Location & Seq

Genomic Coordinates Reverse (-)

17252844 .. 17340420

Gene Structure 87577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0180400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGGGTTTTCAAGAACATCAGGAGAAAGCAAAGTATCTTCTGATCATCAACCATGGTTTTAGGTTTGATCAACTCTTAATTTTCTTCCTGATCATTCTTTCAAGCTTGTGGAATTGTCATGTTGCTGCTGCAGCAGACAATATTGGGGACACACTCAAAATAGGCGACACTCTCAATTCCTCAAGCGCTTTAGTTTCCACCACTGGGAAGTTCACTTTGCTTTTCTTGCCCCTCAGTTCAAGTTCCAACTACAGCTATCTATATATTAGCCGGTACAATGTAAGTGGTGCGAATAGGGCTTGGGTTGGCAACCGAGACTTGCCTGTTCTGTACCCTTTTGGAGTTCTTACCTTGGACTCCAACAACACATTAAAAATCATTACAAACAACGAAGGTGGCGGTGGCGATCCTCCTATAGTGCTTGGCTCCGCGCCAAAAAGTAGTAGTAATGTTGTGGCTACTCTGTCGGATTCTGGCAATTTTATCCTACAAGAGTTGAACTCCGATGGATCAACGAAGCAGGTGTGGTGGCAAAGTTTTGATTATCCAGCAGATACCTTTTTACCAGGCATGAAGTTAGGTGTCAACCGTAGCAACGGGCACATTTGGTCTCTTACGTCATGGACATCCGTTAACTACCCACCGCCGGGGCCTTTCATCCTAGATTGGGACCCAACTGCCCGCCAATTGGAAATTCGGAGAGAAGGGGTGGTTTGTTGGAGAAGCGGAAACTATAGTGCTACAAACAACAGATTCCAAAACATTTTGCCGAATCCAAAGGTTAGCTACAAGTTTAGCATTGTTTCAAATGAGAATGAAGACTACCTCACTTACACTTCTGAAGATGGTGCATATGAGTTACCAGAATGGATTCTAAATTATTATGGGAAGCTTTTTAATTATTATGGATTGGGAATTGATATTGCACGAGCAGATCAGTGTGGAGGCTACAACACAGATGGAGTAGGGTGCCAGACAACTGGCCGGCCAACTACTTGTATGGAGGATTTCGGCAGTCCATCTGTGCTAAAAAAAGGTTACTTTAAACCAATCACCTCGAGTTCAGCTTCAAGATGCCCATACTCGCTCAACTTTGTATCAAATGGAAGTTACAGTGGTACTAGTATTGACTGTAACAATACTTGTTTGCAAAACTGTGACTGCCTTGGATTGGACTTTCAATTTGATAATCAGACTGGATGCCGATTTTGGAGTGTGGACTGTGAGTTCGTTGAAGACCTCACTCGACCTGATAATTCAAGCAGTTTGGTTTTAGCAAAATTACCACCAAGCAAAAGCGGTGCAACGCATAAATGGATCTGGATTGGGGTTGCTATTAGTGCTGCTCTAGTGATAATGGCCTTTTCCATCTTGTGCTATCTACGAAGAAGAAGAAGAAGACAATCTAAACTTTCAGGTGAGGGTAAGATTGACCAGAATGAATTGCTGAACTTCAGGAGTTCTAAGAGGCCTACTGATTTGAATGGACTTCAAAATGATGGAAAGATGGGACATGATTTGAGCGTATTTAGCTATGCATCTGTGATGGCTGCCACAATCAACTTCGCTGAAGAAAACAAGCTTGGAGAAGGGGGCTTTGGACCTGTCTATAAGGGGAAATTGGCAACGGGAGAAGAAGTAGCTGTGAAGAGGCTTTCAAAATGTTCAGGGCAAGGAACACTAGAGTTTAAGAATGAATTGATCCTCATATATGAACTTCAACACACAAACCTTGTTCAGCTTTTTGGATTTTGCATTCACGGTGAAGAGAGGATGTTGATATATGAGTACATGCCAAACAAAAGTCTGGACTACTTTTTATTTGATTCAGTCAGAGGTGTTTTTCTAGATTGGAGCAAGCGTTTCAGCATAATTGAAGGAATCTCTCAAGGATTGCTTTATTTGCACAAATTCTCAAGAACAAGAGTAATTCATAGAGATTTAAAAGCTAGTAACGTACTACTTGATGAAAATATGAACCCCAAAATTTCAGATTTTGGTATGGCTAGGATTTTCTCCATTAATGAACTGGAAGCAAATACTAGTAGGATTGTTGGGACACGTGGTTACATGCCTCCTGAGTACGCAATGGAAGGAATTTTCTCTACAAAATCCGATGTCTACAGTTTTGGAGTGTTGGTGCTTGAAATCATTAGTGGTAGGAAAAACAATAGCTTCTACAATGATGATCGCGCCATCAATTTAGTAGGATATGCATGGGAGTTGTGGAAAGAAAGCACAGGGCTAAAACTAATGGATCCAACACTAGCTGATTCGTGTACTAACAAGGATCAACTGTTAAGATGCGTTCAAGTTGGTCTTCTTTGCGTGGAAGATAGGGCAGCGAATCGACCTACCATGTCAGATGTGCTCTCCGCGTTGACAAATGAAAGCTCACCATTACCTGCACCTACAAAGCCAGCATTTTCTACAGATAGGCATGCGGTCACCAGTAGTATAGTTGAAAAGGAACCACAAATTTTATCTGTAAATGATCTGACCATTTCTGATTGTGATGGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

841

Amino Acids

93.62

Weight (kDa)

5.81

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	101 - 208	3.7e-23	D-mannose binding lectin
Pkinase	PF00069	523 - 724	3e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	525 - 739	3.5e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005908)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720
malus_domestica	MD03G1200600.v1.1
prunus_persica	Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039641
rosa_laevigata	RLG00000033933
rosa_multiflora	Rmu_ssc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_1G00041570
rosa_rugosa	Rorug05G0180400 Rorug05G0180500 Rorug05G0180600 Rorug05G0180700 Rorug05G0180800
rosa_samantha	Rh5AG267600 Rh5BG271900 Rh5CG304500 Rh5DG279600
rosa_wichuraiana	Rw5G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
Acc36I	ACCTGC	2 cut(s)	511, 2413
AccB1I	GGYRCC	1 cut(s)	969
AccI	GTMKAC	1 cut(s)	2121
AccII	CGCG	3 cut(s)	431, 2193, 2378
AciI	CCGC	8 cut(s)	399, 429, 644, 682, 726, 1299, 2376, 2444
AclWI	GGATC	7 cut(s)	401, 517, 1325, 1696, 2252, 2265, 2298
AcoI	YGGCCR	2 cut(s)	982, 986
AcsI	RAATTY	5 cut(s)	693, 1910, 1986, 2097, 2478
AcuI	CTGAAG	3 cut(s)	861, 1438, 1590
AcvI	CACGTG	1 cut(s)	2063
AfaI	GTAC	7 cut(s)	275, 332, 1120, 1790, 1959, 2084, 2281
AfeI	AGCGCT	1 cut(s)	187
AfiI	CCNNNNNNNGG	6 cut(s)	204, 646, 647, 667, 688, 1171
AflIII	ACRYGT	1 cut(s)	2060
AhlI	ACTAGT	2 cut(s)	1121, 2042
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	6 cut(s)	678, 710, 1566, 1581, 1598, 1613
AloI	GAACNNNNNNTCC	2 cut(s)	1211, 1243
Alw21I	GWGCWC	1 cut(s)	2373
Alw26I	GTCTC	2 cut(s)	309, 615
AlwI	GGATC	7 cut(s)	401, 517, 1325, 1696, 2252, 2265, 2298
Ama87I	CYCGRG	1 cut(s)	1057
Aor51HI	AGCGCT	1 cut(s)	187
AoxI	GGCC	5 cut(s)	650, 982, 986, 1359, 1469
ApeKI	GCWGC	6 cut(s)	125, 128, 131, 1343, 1550, 2342
ApoI	RAATTY	5 cut(s)	693, 1910, 1986, 2097, 2478
ArsI	GACNNNNNNTTYG	4 cut(s)	1166, 1198, 1211, 1243
AseI	ATTAAT	1 cut(s)	2022
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	3 cut(s)	188, 433, 2195
AspS9I	GGNCC	3 cut(s)	650, 670, 1601
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	5 cut(s)	1045, 1430, 1775, 2388, 2440
AvaI	CYCGRG	1 cut(s)	1057
AvaII	GGWCC	2 cut(s)	670, 1601
BaeGI	GKGCMC	1 cut(s)	603
BamHI	GGATCC	1 cut(s)	2257
BanI	GGYRCC	1 cut(s)	969
BauI	CACGAG	1 cut(s)	927
BbrPI	CACGTG	1 cut(s)	2063
BbsI	GAAGAC	4 cut(s)	825, 1242, 1405, 2312
Bbv12I	GWGCWC	1 cut(s)	2373
BbvI	GCAGC	6 cut(s)	112, 115, 143, 1330, 1537, 2354
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	3 cut(s)	42, 67, 90
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	2 cut(s)	309, 615
BcuI	ACTAGT	2 cut(s)	1121, 2042
BfaI	CTAG	9 cut(s)	662, 1122, 1349, 1682, 1847, 1950, 2007, 2043, 2267
BfmI	CTRYAG	6 cut(s)	129, 250, 414, 733, 2122, 2430
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	2 cut(s)	511, 2413
BisI	GCNGC	6 cut(s)	126, 129, 132, 1344, 1551, 2343
BlsI	GCNGC	6 cut(s)	127, 130, 133, 1345, 1552, 2344
Bme1390I	CCNGG	2 cut(s)	567, 648
Bme18I	GGWCC	2 cut(s)	670, 1601
BmeT110I	CYCGRG	1 cut(s)	1057
BmgT120I	GGNCC	3 cut(s)	650, 670, 1601
BmiI	GGNNCC	7 cut(s)	427, 651, 671, 672, 971, 2259, 2472
BmrFI	CCNGG	2 cut(s)	567, 648
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	4 cut(s)	1064, 1190, 1547, 2294
BmuI	ACTGGG	1 cut(s)	213
BpiI	GAAGAC	4 cut(s)	825, 1242, 1405, 2312
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpuEI	CTTGAG	3 cut(s)	166, 1872, 1900
BpuMI	CCSGG	1 cut(s)	648
BsaAI	YACGTR	1 cut(s)	2063
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	4 cut(s)	52, 351, 647, 1165
BsaXI	ACNNNNNCTCC	6 cut(s)	1623, 1653, 1846, 1876, 2124, 2154
Bsc4I	CCNNNNNNNGG	6 cut(s)	204, 646, 647, 667, 688, 1171
Bse118I	RCCGGY	2 cut(s)	270, 984
Bse1I	ACTGG	5 cut(s)	208, 985, 1201, 2034, 2451
Bse3DI	GCAATG	1 cut(s)	2094
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	4 cut(s)	52, 351, 647, 1165
BseGI	GGATG	4 cut(s)	626, 657, 1205, 1779
BseLI	CCNNNNNNNGG	6 cut(s)	204, 646, 647, 667, 688, 1171
BseMI	GCAATG	1 cut(s)	2094
BseMII	CTCAG	2 cut(s)	247, 2070
BseNI	ACTGG	5 cut(s)	208, 985, 1201, 2034, 2451
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	6 cut(s)	112, 115, 143, 1330, 1537, 2354
BsgI	GTGCAG	1 cut(s)	2391
Bsh1236I	CGCG	3 cut(s)	431, 2193, 2378
BshFI	GGCC	5 cut(s)	652, 984, 988, 1361, 1471
BshNI	GGYRCC	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	2373
BsiHKCI	CYCGRG	1 cut(s)	1057
BsiSI	CCGG	3 cut(s)	271, 647, 985
BslFI	GGGAC	4 cut(s)	161, 683, 1524, 2071
BslI	CCNNNNNNNGG	6 cut(s)	204, 646, 647, 667, 688, 1171
BsmAI	GTCTC	2 cut(s)	309, 615
BsmFI	GGGAC	4 cut(s)	161, 683, 1524, 2071
BsmI	GAATGC	1 cut(s)	1755
BsnI	GGCC	5 cut(s)	652, 984, 988, 1361, 1471
Bso31I	GGTCTC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	1057
Bsp1286I	GDGCHC	2 cut(s)	603, 2373
Bsp19I	CCATGG	1 cut(s)	52
BspACI	CCGC	8 cut(s)	399, 429, 644, 682, 726, 1299, 2376, 2444
BspANI	GGCC	5 cut(s)	652, 984, 988, 1361, 1471
BspCNI	CTCAG	2 cut(s)	246, 2071
BspFNI	CGCG	3 cut(s)	431, 2193, 2378
BspLI	GGNNCC	7 cut(s)	427, 651, 671, 672, 971, 2259, 2472
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	2 cut(s)	511, 2413
BspPI	GGATC	7 cut(s)	401, 517, 1325, 1696, 2252, 2265, 2298
BspT107I	GGYRCC	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	2094
BsrFI	RCCGGY	2 cut(s)	270, 984
BsrI	ACTGG	5 cut(s)	208, 985, 1201, 2034, 2451
BssAI	RCCGGY	2 cut(s)	270, 984
BssECI	CCNNGG	4 cut(s)	52, 351, 647, 1165
BssSI	CACGAG	1 cut(s)	927
BssT1I	CCWWGG	3 cut(s)	52, 351, 1165
Bst2BI	CACGAG	1 cut(s)	927
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	8 cut(s)	590, 1115, 1133, 1157, 1223, 1763, 2126, 2298
Bst6I	CTCTTC	2 cut(s)	1643, 1761
BstBAI	YACGTR	1 cut(s)	2063
BstC8I	GCNNGC	5 cut(s)	682, 986, 1859, 2421, 2442
BstDEI	CTNAG	3 cut(s)	233, 1464, 2079
BstDSI	CCRYGG	1 cut(s)	52
BstEII	GGTNACC	1 cut(s)	2446
BstF5I	GGATG	4 cut(s)	626, 657, 1205, 1779
BstFNI	CGCG	3 cut(s)	431, 2193, 2378
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	188, 433, 2195
BstMAI	GTCTC	2 cut(s)	309, 615
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 226, 296, 1340, 1530, 1903
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	3 cut(s)	1795, 2074, 2444
BstPI	GGTNACC	1 cut(s)	2446
BstSCI	CCNGG	2 cut(s)	565, 646
BstSFI	CTRYAG	6 cut(s)	129, 250, 414, 733, 2122, 2430
BstSLI	GKGCMC	1 cut(s)	603
BstUI	CGCG	3 cut(s)	431, 2193, 2378
BstV1I	GCAGC	6 cut(s)	112, 115, 143, 1330, 1537, 2354
BstV2I	GAAGAC	4 cut(s)	825, 1242, 1405, 2312
BstX2I	RGATCY	2 cut(s)	1317, 2257
BstXI	CCANNNNNNTGG	1 cut(s)	980
BstYI	RGATCY	2 cut(s)	1317, 2257
BsuRI	GGCC	5 cut(s)	652, 984, 988, 1361, 1471
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	4 cut(s)	626, 657, 1205, 1779
BtsIMutI	CAGTG	3 cut(s)	201, 944, 1120
BveI	ACCTGC	2 cut(s)	511, 2413
Cac8I	GCNNGC	5 cut(s)	682, 986, 1859, 2421, 2442
CfoI	GCGC	3 cut(s)	188, 433, 2195
Cfr10I	RCCGGY	2 cut(s)	270, 984
Cfr13I	GGNCC	3 cut(s)	650, 670, 1601
Csp6I	GTAC	7 cut(s)	274, 331, 1119, 1789, 1958, 2083, 2280
CspCI	CAANNNNNGTGG	4 cut(s)	265, 300, 376, 411
CviQI	GTAC	7 cut(s)	274, 331, 1119, 1789, 1958, 2083, 2280
DdeI	CTNAG	3 cut(s)	233, 1464, 2079
DraI	TTTAAA	2 cut(s)	1045, 1944
EaeI	YGGCCR	2 cut(s)	982, 986
Eam1104I	CTCTTC	2 cut(s)	1643, 1761
EarI	CTCTTC	2 cut(s)	1643, 1761
Eco130I	CCWWGG	3 cut(s)	52, 351, 1165
Eco147I	AGGCCT	1 cut(s)	1471
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	670, 1601
Eco47III	AGCGCT	1 cut(s)	187
Eco57I	CTGAAG	3 cut(s)	861, 1438, 1590
Eco72I	CACGTG	1 cut(s)	2063
Eco88I	CYCGRG	1 cut(s)	1057
Eco91I	GGTNACC	1 cut(s)	2446
EcoO109I	RGGNCCY	2 cut(s)	650, 670
EcoO65I	GGTNACC	1 cut(s)	2446
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	3 cut(s)	52, 351, 1165
EcoT22I	ATGCAT	2 cut(s)	1540, 2218
ErhI	CCWWGG	3 cut(s)	52, 351, 1165
FalI	AAGNNNNNCTT	4 cut(s)	1881, 1913, 2304, 2336
FaqI	GGGAC	4 cut(s)	161, 683, 1524, 2071
FauI	CCCGC	1 cut(s)	689
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	3 cut(s)	42, 67, 90
FblI	GTMKAC	1 cut(s)	2121
Fnu4HI	GCNGC	6 cut(s)	126, 129, 132, 1344, 1551, 2343
FokI	GGATG	4 cut(s)	613, 644, 1212, 1786
FseI	GGCCGGCC	1 cut(s)	988
Fsp4HI	GCNGC	6 cut(s)	126, 129, 132, 1344, 1551, 2343
FspBI	CTAG	9 cut(s)	662, 1122, 1349, 1682, 1847, 1950, 2007, 2043, 2267
GlaI	GCGC	3 cut(s)	187, 432, 2194
GluI	GCNGC	6 cut(s)	126, 129, 132, 1344, 1551, 2343
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	5 cut(s)	652, 984, 988, 1361, 1471
HapII	CCGG	3 cut(s)	271, 647, 985
HhaI	GCGC	3 cut(s)	188, 433, 2195
Hin6I	GCGC	3 cut(s)	186, 431, 2193
HinP1I	GCGC	3 cut(s)	186, 431, 2193
HincII	GTYRAC	3 cut(s)	586, 634, 2382
HindII	GTYRAC	3 cut(s)	586, 634, 2382
HindIII	AAGCTT	3 cut(s)	103, 890, 1580
HinfI	GANTC	9 cut(s)	356, 470, 753, 772, 871, 1826, 1881, 2273, 2347
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	3 cut(s)	271, 647, 985
HphI	GGTGA	5 cut(s)	1045, 1430, 1775, 2388, 2440
Hpy166II	GTNNAC	7 cut(s)	213, 586, 634, 1219, 2122, 2280, 2382
Hpy8I	GTNNAC	7 cut(s)	213, 586, 634, 1219, 2122, 2280, 2382
HpyAV	CCTTC	5 cut(s)	386, 698, 1583, 1871, 2087
HpyCH4III	ACNGT	8 cut(s)	590, 1115, 1133, 1157, 1223, 1763, 2126, 2298
HpyCH4IV	ACGT	4 cut(s)	617, 1956, 2062, 2521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 226, 296, 1340, 1530, 1903
HpyF3I	CTNAG	3 cut(s)	233, 1464, 2079
HpySE526I	ACGT	4 cut(s)	617, 1956, 2062, 2521
HspAI	GCGC	3 cut(s)	186, 431, 2193
KflI	GGGWCCC	1 cut(s)	670
KroI	GCCGGC	1 cut(s)	984
KroNI	GCCGGC	1 cut(s)	986
Ksp22I	TGATCA	3 cut(s)	42, 67, 90
KspAI	GTTAAC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	431, 1854
Lsp1109I	GCAGC	6 cut(s)	112, 115, 143, 1330, 1537, 2354
LweI	GCATC	4 cut(s)	1064, 1190, 1547, 2294
MaeI	CTAG	9 cut(s)	662, 1122, 1349, 1682, 1847, 1950, 2007, 2043, 2267
MaeII	ACGT	4 cut(s)	617, 1956, 2062, 2521
MaeIII	GTNAC	8 cut(s)	858, 1037, 1109, 1133, 1157, 1952, 2066, 2446
MfeI	CAATTG	1 cut(s)	686
MflI	RGATCY	2 cut(s)	1317, 2257
MhlI	GDGCHC	2 cut(s)	603, 2373
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	5 cut(s)	270, 384, 447, 698, 2285
Mph1103I	ATGCAT	2 cut(s)	1540, 2218
MroNI	GCCGGC	1 cut(s)	984
MroXI	GAANNNNTTC	1 cut(s)	870
MspI	CCGG	3 cut(s)	271, 647, 985
MspR9I	CCNGG	2 cut(s)	567, 648
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	1755
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	3 cut(s)	431, 2193, 2378
MwoI	GCNNNNNNNGC	6 cut(s)	131, 226, 296, 1340, 1530, 1903
NaeI	GCCGGC	1 cut(s)	986
NciI	CCSGG	1 cut(s)	648
NcoI	CCATGG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	853
NgoMIV	GCCGGC	1 cut(s)	984
NlaIV	GGNNCC	7 cut(s)	427, 651, 671, 672, 971, 2259, 2472
NmuCI	GTSAC	2 cut(s)	1157, 2446
NsiI	ATGCAT	2 cut(s)	1540, 2218
NspI	RCATGY	3 cut(s)	1795, 2074, 2444
PaeI	GCATGC	1 cut(s)	2444
PaeR7I	CTCGAG	1 cut(s)	1057
PaqCI	CACCTGC	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	1471
PctI	GAATGC	1 cut(s)	1755
PdiI	GCCGGC	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	8 cut(s)	470, 753, 772, 871, 1826, 1881, 2273, 2347
PkrI	GCNGC	6 cut(s)	127, 130, 133, 1345, 1552, 2344
PleI	GAGTC	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	2063
PmlI	CACGTG	1 cut(s)	2063
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	2063
PpuMI	RGGWCCY	1 cut(s)	670
PshBI	ATTAAT	1 cut(s)	2022
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	565
PspCI	CACGTG	1 cut(s)	2063
PspEI	GGTNACC	1 cut(s)	2446
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	7 cut(s)	427, 651, 671, 672, 971, 2259, 2472
PspPI	GGNCC	3 cut(s)	650, 670, 1601
PspPPI	RGGWCCY	1 cut(s)	670
PspXI	VCTCGAGB	1 cut(s)	1057
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	1317, 2257
RigI	GGCCGGCC	1 cut(s)	988
RsaI	GTAC	7 cut(s)	275, 332, 1120, 1790, 1959, 2084, 2281
RsaNI	GTAC	7 cut(s)	274, 331, 1119, 1789, 1958, 2083, 2280
SatI	GCNGC	6 cut(s)	126, 129, 132, 1344, 1551, 2343
Sau96I	GGNCC	3 cut(s)	650, 670, 1601
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	567, 648
SduI	GDGCHC	2 cut(s)	603, 2373
SfaNI	GCATC	4 cut(s)	1064, 1190, 1547, 2294
SfcI	CTRYAG	6 cut(s)	129, 250, 414, 733, 2122, 2430
Sfr274I	CTCGAG	1 cut(s)	1057
SinI	GGWCC	2 cut(s)	670, 1601
SlaI	CTCGAG	1 cut(s)	1057
SmlI	CTYRAG	4 cut(s)	181, 1057, 1887, 1915
SmoI	CTYRAG	4 cut(s)	181, 1057, 1887, 1915
SpeI	ACTAGT	2 cut(s)	1121, 2042
SphI	GCATGC	1 cut(s)	2444
SseBI	AGGCCT	1 cut(s)	1471
SsiI	CCGC	8 cut(s)	399, 429, 644, 682, 726, 1299, 2376, 2444
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	9 cut(s)	662, 1122, 1349, 1682, 1847, 1950, 2007, 2043, 2267
StuI	AGGCCT	1 cut(s)	1471
StyD4I	CCNGG	2 cut(s)	565, 646
StyI	CCWWGG	3 cut(s)	52, 351, 1165
TaaI	ACNGT	8 cut(s)	590, 1115, 1133, 1157, 1223, 1763, 2126, 2298
TaiI	ACGT	4 cut(s)	620, 1959, 2065, 2524
TaqI	TCGA	3 cut(s)	1058, 1246, 2350
TatI	WGTACW	2 cut(s)	1788, 2279
TfiI	GAWTC	8 cut(s)	470, 753, 772, 871, 1826, 1881, 2273, 2347
TscAI	CASTG	3 cut(s)	208, 944, 1120
TseFI	GTSAC	2 cut(s)	1157, 2446
TseI	GCWGC	6 cut(s)	125, 128, 131, 1343, 1550, 2342
Tsp45I	GTSAC	2 cut(s)	1157, 2446
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	3 cut(s)	208, 944, 1120
VpaK11BI	GGWCC	2 cut(s)	670, 1601
VspI	ATTAAT	1 cut(s)	2022
XapI	RAATTY	5 cut(s)	693, 1910, 1986, 2097, 2478
XbaI	TCTAGA	1 cut(s)	1846
XceI	RCATGY	3 cut(s)	1795, 2074, 2444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2026
XhoI	CTCGAG	1 cut(s)	1057
XmiI	GTMKAC	1 cut(s)	2121
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	9 cut(s)	662, 1122, 1349, 1682, 1847, 1950, 2007, 2043, 2267
Zsp2I	ATGCAT	2 cut(s)	1540, 2218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.