Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005908

Physical Location & Seq

Genomic Coordinates Forward (+)

33540744 .. 33545612

Gene Structure 4869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGATGATTGTCTTGAAAATGATGATTCCATGTTGACCAGAGAACCAGACATTAAATATGCAGTTGATAACGTTGAAGTTGTTCATGGTTACGTGGATGAAAAAGGCTTTGATAGAAGGGATGATTCCAATGAGGATCTCAACCAGCATGAGCAACAGATTTCTCACTCACTAGATGCAGACTTCAGAGATCAAATTTCAGAATCTCTGGAAAAATCTTATCACGTGTCCATTGAATCTGATCATGACAATGCCATAGAAACAAAATCTGACCTTCAAGAGAGGACTCAGTCCGCATACAATGATAGTAATCATTACCAAGGTGAGATGGATGAGTTGCATGGCAGTAATTTTTTTAAAACCTCCTCTCAATCTAAGTCGCAAACTTTCGATAATGAAATGGGAACTGAAGATTCTCCTAATTCACAGGAGTCTCCTCTGACAGAAAATAGGAACCAGGGAGCAGGAGATTCTGACGTGGTTAGGTCACCTCGTACTGGAAGAGCAAGGAATATCAGCTCAGAGAAGTTACAAGATGATTCAATTACGTCTTCCATTCATGAAATAGAAAAGGAAGCTACTGATATACAAACATGGCAGTCATTATCTTCTCCTAAATCCCACTGGTTAAATAATGAACCTAACGAAGATGACTCCTCGGGTGAGAACAGAATACGAGGAGTACCCCAGTCTGACCTTCAATTTCTTGGAAGATCAGCTGGAGGATCAATTTCTCCTGTGACTAGGAGACAAATGTCAATTTCACCTGAAGGGTCTCCTTTGCCACTTCACTCTCTCCATGACCGTAAGCATATATCTTCTCAGCAAGGTTCTCCAGACCCATCATATGAACCTCAATCTCATAGACAGAGAATTTCTTCACCTCAAAGGTCTGACATGCATACAGGAGTTTTCCCTGGTCATTTATCTCCTGTGAGGCAAACCTCTGTTTCTACACATGACATTCGGCAAGAGCCCCTGCAAGACAGTTTTGCAGTGAAGCACATATCTGCATCCCTAAAGTCCCATCCAAAGTATCGGAAAAGGGACAGATCAGAGTCACGATCACCCACTCAGCGTAGAGATTCACCCACTCGGCGTAGAGATTCACCCACTAGGCAGAGAGGTTCACTGACTCGGCACAGAGGTTCACCCATTCGACATAGAGGTTCTCCTACTGGGCATAGAGATTCACGAATACGGCATAGAGATTCACCCACTCGGCATAGAGATTCTTATGCCTACCAGAGAGATTATCGTGATAGATTTCGGTCAAGGTCCCCATATTCAAAATCCCATCATAGATCAAGGTCCCCTTATTCAAGAGCCCATTATAGATCAAGATCCCCTTATTCAAGAGACCATGATAGATCGACAAGGCGAAGGCAATCTCCTAGGCGCAGGTCCCCTTTTCCTGAATATCATAATTATCATCGCCGGTCTCCTAGAAGGACACCTTGGTCACCACCTCCTAATAGGAAAACCGGATTAGGGAGACCTGGTAGAAATTTATTTGTTGCAGGTTTCAGCTTCTTAACTACAGAGAGAGATTTGGAAAGGAAGTTCTCTAGGTTTGGCCGAGTACAAGATGTTCGTATTGTTAGAGACAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

538

Amino Acids

62.37

Weight (kDa)

9.72

Isoelectric Point (pI)

94.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005908)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720
malus_domestica	MD03G1200600.v1.1
prunus_persica	Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039641
rosa_laevigata	RLG00000033933
rosa_multiflora	Rmu_ssc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_1G00041570
rosa_rugosa	Rorug05G0180400 Rorug05G0180500 Rorug05G0180600 Rorug05G0180700 Rorug05G0180800
rosa_samantha	Rh5AG267600 Rh5BG271900 Rh5CG304500 Rh5DG279600
rosa_wichuraiana	Rw5G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1459
Acc36I	ACCTGC	2 cut(s)	1392, 1511
AciI	CCGC	1 cut(s)	294
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	3 cut(s)	144, 733, 1338
AcoI	YGGCCR	1 cut(s)	1576
AcsI	RAATTY	3 cut(s)	195, 873, 1507
AcuI	CTGAAG	3 cut(s)	169, 429, 789
AcvI	CACGTG	1 cut(s)	226
AfaI	GTAC	3 cut(s)	496, 684, 1584
AfiI	CCNNNNNNNGG	2 cut(s)	497, 1491
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	9 cut(s)	17, 77, 236, 278, 543, 701, 1290, 1323, 1356
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	3 cut(s)	456, 916, 1498
AjuI	GAANNNNNNNTTGG	2 cut(s)	1441, 1473
AloI	GAACNNNNNNTCC	2 cut(s)	1547, 1579
AluBI	AGCT	4 cut(s)	519, 578, 719, 1530
AluI	AGCT	4 cut(s)	519, 578, 719, 1530
Alw26I	GTCTC	7 cut(s)	438, 742, 780, 1353, 1446, 1489, 1599
AlwI	GGATC	3 cut(s)	144, 733, 1338
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	1 cut(s)	1576
ApoI	RAATTY	3 cut(s)	195, 873, 1507
Asp700I	GAANNNNTTC	2 cut(s)	81, 877
AspA2I	CCTAGG	1 cut(s)	1394
AspLEI	GCGC	1 cut(s)	1401
AspS9I	GGNCC	3 cut(s)	1278, 1311, 1404
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	3 cut(s)	1278, 1311, 1404
AvrII	CCTAGG	1 cut(s)	1394
BanII	GRGCYC	2 cut(s)	978, 1330
BbrPI	CACGTG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	543
BccI	CCATC	4 cut(s)	322, 850, 1035, 1305
BceAI	ACGGC	1 cut(s)	1217
BciT130I	CCWGG	3 cut(s)	458, 918, 1500
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	7 cut(s)	438, 742, 780, 1353, 1446, 1489, 1599
BfaI	CTAG	6 cut(s)	173, 744, 1116, 1395, 1446, 1569
BfmI	CTRYAG	1 cut(s)	1539
BfuAI	ACCTGC	2 cut(s)	1392, 1511
BlnI	CCTAGG	1 cut(s)	1394
Bme1390I	CCNGG	3 cut(s)	458, 918, 1500
Bme18I	GGWCC	3 cut(s)	1278, 1311, 1404
BmeT110I	CYCGRG	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	3 cut(s)	1278, 1311, 1404
BmiI	GGNNCC	4 cut(s)	455, 1280, 1313, 1406
BmrFI	CCNGG	3 cut(s)	458, 918, 1500
BmrI	ACTGGG	2 cut(s)	682, 1188
BmsI	GCATC	2 cut(s)	166, 1022
BmuI	ACTGGG	2 cut(s)	682, 1188
BoxI	GACNNNNGTC	1 cut(s)	754
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	741, 819
BsaAI	YACGTR	2 cut(s)	94, 226
BsaBI	GATNNNNATC	2 cut(s)	309, 1342
BsaI	GGTCTC	4 cut(s)	780, 1353, 1446, 1489
BsaJI	CCNNGG	6 cut(s)	319, 457, 657, 916, 1394, 1457
BsaWI	WCCGGW	1 cut(s)	1484
BsaXI	ACNNNNNCTCC	2 cut(s)	1486, 1516
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 1491
Bse118I	RCCGGY	1 cut(s)	1437
Bse1I	ACTGG	4 cut(s)	502, 629, 688, 1183
Bse8I	GATNNNNATC	2 cut(s)	309, 1342
BseBI	CCWGG	3 cut(s)	458, 918, 1500
BseDI	CCNNGG	6 cut(s)	319, 457, 657, 916, 1394, 1457
BseGI	GGATG	6 cut(s)	10, 103, 127, 337, 1013, 1027
BseJI	GATNNNNATC	2 cut(s)	309, 1342
BseLI	CCNNNNNNNGG	2 cut(s)	497, 1491
BseMII	CTCAG	4 cut(s)	302, 534, 836, 1088
BseNI	ACTGG	4 cut(s)	502, 629, 688, 1183
BseRI	GAGGAG	4 cut(s)	355, 426, 646, 693
BshFI	GGCC	1 cut(s)	1578
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	1438, 1485
BslFI	GGGAC	5 cut(s)	1009, 1061, 1264, 1297, 1390
BslI	CCNNNNNNNGG	2 cut(s)	497, 1491
BsmAI	GTCTC	7 cut(s)	438, 742, 780, 1353, 1446, 1489, 1599
BsmFI	GGGAC	5 cut(s)	1009, 1061, 1264, 1297, 1390
BsnI	GGCC	1 cut(s)	1578
Bso31I	GGTCTC	4 cut(s)	780, 1353, 1446, 1489
BsoBI	CYCGRG	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	978, 1330
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	1578
BspCNI	CTCAG	4 cut(s)	301, 533, 835, 1087
BspHI	TCATGA	2 cut(s)	244, 559
BspLI	GGNNCC	4 cut(s)	455, 1280, 1313, 1406
BspMI	ACCTGC	2 cut(s)	1392, 1511
BspPI	GGATC	3 cut(s)	144, 733, 1338
BspQI	GCTCTTC	1 cut(s)	496
BspTNI	GGTCTC	4 cut(s)	780, 1353, 1446, 1489
BsrFI	RCCGGY	1 cut(s)	1437
BsrI	ACTGG	4 cut(s)	502, 629, 688, 1183
BssAI	RCCGGY	1 cut(s)	1437
BssECI	CCNNGG	6 cut(s)	319, 457, 657, 916, 1394, 1457
BssT1I	CCWWGG	3 cut(s)	319, 1394, 1457
Bst2UI	CCWGG	3 cut(s)	458, 918, 1500
Bst4CI	ACNGT	2 cut(s)	806, 989
Bst6I	CTCTTC	1 cut(s)	496
BstBAI	YACGTR	2 cut(s)	94, 226
BstDEI	CTNAG	5 cut(s)	288, 375, 520, 822, 1074
BstEII	GGTNACC	2 cut(s)	486, 1461
BstF5I	GGATG	6 cut(s)	10, 103, 127, 337, 1013, 1027
BstHHI	GCGC	1 cut(s)	1401
BstMAI	GTCTC	7 cut(s)	438, 742, 780, 1353, 1446, 1489, 1599
BstNI	CCWGG	3 cut(s)	458, 918, 1500
BstNSI	RCATGY	1 cut(s)	901
BstPAI	GACNNNNGTC	1 cut(s)	754
BstPI	GGTNACC	2 cut(s)	486, 1461
BstSCI	CCNGG	3 cut(s)	456, 916, 1498
BstSFI	CTRYAG	1 cut(s)	1539
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	2 cut(s)	136, 1343
BstYI	RGATCY	2 cut(s)	136, 1343
BsuRI	GGCC	1 cut(s)	1578
BtgZI	GCGATG	1 cut(s)	1418
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	6 cut(s)	10, 103, 127, 337, 1013, 1027
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	3 cut(s)	622, 1002, 1130
BveI	ACCTGC	2 cut(s)	1392, 1511
CciI	TCATGA	2 cut(s)	244, 559
CfoI	GCGC	1 cut(s)	1401
Cfr10I	RCCGGY	1 cut(s)	1437
Cfr13I	GGNCC	3 cut(s)	1278, 1311, 1404
CsiI	ACCWGGT	1 cut(s)	1498
Csp6I	GTAC	3 cut(s)	495, 683, 1583
CviJI	RGCY	8 cut(s)	108, 519, 578, 719, 976, 1328, 1530, 1578
CviKI_1	RGCY	8 cut(s)	108, 519, 578, 719, 976, 1328, 1530, 1578
CviQI	GTAC	3 cut(s)	495, 683, 1583
DdeI	CTNAG	5 cut(s)	288, 375, 520, 822, 1074
DraI	TTTAAA	1 cut(s)	358
DrdI	GACNNNNNNGTC	1 cut(s)	1459
DseDI	GACNNNNNNGTC	1 cut(s)	1459
EaeI	YGGCCR	1 cut(s)	1576
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	3 cut(s)	319, 1394, 1457
Eco24I	GRGCYC	2 cut(s)	978, 1330
Eco31I	GGTCTC	4 cut(s)	780, 1353, 1446, 1489
Eco47I	GGWCC	3 cut(s)	1278, 1311, 1404
Eco57I	CTGAAG	3 cut(s)	169, 429, 789
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	658
Eco91I	GGTNACC	2 cut(s)	486, 1461
EcoO109I	RGGNCCY	3 cut(s)	1278, 1311, 1404
EcoO65I	GGTNACC	2 cut(s)	486, 1461
EcoRII	CCWGG	3 cut(s)	456, 916, 1498
EcoT14I	CCWWGG	3 cut(s)	319, 1394, 1457
EcoT22I	ATGCAT	1 cut(s)	903
EcoT38I	GRGCYC	2 cut(s)	978, 1330
ErhI	CCWWGG	3 cut(s)	319, 1394, 1457
FalI	AAGNNNNNCTT	6 cut(s)	1300, 1332, 1333, 1365, 1441, 1473
FaqI	GGGAC	5 cut(s)	1009, 1061, 1264, 1297, 1390
FauNDI	CATATG	1 cut(s)	847
FbaI	TGATCA	1 cut(s)	241
FokI	GGATG	6 cut(s)	17, 110, 134, 344, 1000, 1014
FriOI	GRGCYC	2 cut(s)	978, 1330
FspBI	CTAG	6 cut(s)	173, 744, 1116, 1395, 1446, 1569
GlaI	GCGC	1 cut(s)	1400
GsuI	CTGGAG	2 cut(s)	741, 819
HaeIII	GGCC	1 cut(s)	1578
HapII	CCGG	2 cut(s)	1438, 1485
HhaI	GCGC	1 cut(s)	1401
Hin6I	GCGC	1 cut(s)	1399
HinP1I	GCGC	1 cut(s)	1399
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	1438, 1485
Hpy166II	GTNNAC	3 cut(s)	36, 1130, 1151
Hpy8I	GTNNAC	3 cut(s)	36, 1130, 1151
HpyAV	CCTTC	6 cut(s)	111, 284, 707, 764, 1377, 1443
HpyCH4III	ACNGT	2 cut(s)	806, 989
HpyCH4IV	ACGT	5 cut(s)	72, 93, 225, 477, 548
HpyCH4V	TGCA	8 cut(s)	62, 179, 340, 901, 982, 995, 1013, 1520
HpyF3I	CTNAG	5 cut(s)	288, 375, 520, 822, 1074
HpySE526I	ACGT	5 cut(s)	72, 93, 225, 477, 548
HspAI	GCGC	1 cut(s)	1399
Ksp22I	TGATCA	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	461
LweI	GCATC	2 cut(s)	166, 1022
MabI	ACCWGGT	1 cut(s)	1498
MaeI	CTAG	6 cut(s)	173, 744, 1116, 1395, 1446, 1569
MaeII	ACGT	5 cut(s)	72, 93, 225, 477, 548
MaeIII	GTNAC	6 cut(s)	89, 486, 528, 739, 1059, 1461
MboII	GAAGA	8 cut(s)	422, 513, 543, 600, 659, 723, 810, 870
MflI	RGATCY	2 cut(s)	136, 1343
MhlI	GDGCHC	2 cut(s)	978, 1330
MlyI	GAGTC	5 cut(s)	280, 440, 647, 1067, 1129
Mph1103I	ATGCAT	1 cut(s)	903
MroXI	GAANNNNTTC	2 cut(s)	81, 877
MseI	TTAA	4 cut(s)	54, 357, 629, 1535
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	2 cut(s)	1438, 1485
MspR9I	CCNGG	3 cut(s)	458, 918, 1500
MvaI	CCWGG	3 cut(s)	458, 918, 1500
NdeI	CATATG	1 cut(s)	847
NlaIV	GGNNCC	4 cut(s)	455, 1280, 1313, 1406
NmeAIII	GCCGAG	4 cut(s)	1075, 1117, 1201, 1604
NmuCI	GTSAC	4 cut(s)	486, 739, 1059, 1461
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	1 cut(s)	901
PagI	TCATGA	2 cut(s)	244, 559
PciSI	GCTCTTC	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	81, 877
PflFI	GACNNNGTC	1 cut(s)	289
PleI	GAGTC	5 cut(s)	280, 439, 647, 1066, 1129
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	5 cut(s)	280, 439, 647, 1066, 1129
Ppu21I	YACGTR	2 cut(s)	94, 226
PpuMI	RGGWCCY	3 cut(s)	1278, 1311, 1404
PshAI	GACNNNNGTC	1 cut(s)	754
Psp1406I	AACGTT	1 cut(s)	72
Psp5II	RGGWCCY	3 cut(s)	1278, 1311, 1404
Psp6I	CCWGG	3 cut(s)	456, 916, 1498
PspCI	CACGTG	1 cut(s)	226
PspEI	GGTNACC	2 cut(s)	486, 1461
PspGI	CCWGG	3 cut(s)	456, 916, 1498
PspN4I	GGNNCC	4 cut(s)	455, 1280, 1313, 1406
PspPI	GGNCC	3 cut(s)	1278, 1311, 1404
PspPPI	RGGWCCY	3 cut(s)	1278, 1311, 1404
PsrI	GAACNNNNNNTAC	2 cut(s)	1575, 1607
PsuI	RGATCY	2 cut(s)	136, 1343
PsyI	GACNNNGTC	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	496, 684, 1584
RsaNI	GTAC	3 cut(s)	495, 683, 1583
RseI	CAYNNNNRTG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	4 cut(s)	54, 357, 629, 1535
Sau96I	GGNCC	3 cut(s)	1278, 1311, 1404
SchI	GAGTC	5 cut(s)	280, 440, 647, 1067, 1129
ScrFI	CCNGG	3 cut(s)	458, 918, 1500
SduI	GDGCHC	2 cut(s)	978, 1330
SexAI	ACCWGGT	1 cut(s)	1498
SfaNI	GCATC	2 cut(s)	166, 1022
SfcI	CTRYAG	1 cut(s)	1539
SinI	GGWCC	3 cut(s)	1278, 1311, 1404
SmiMI	CAYNNNNRTG	1 cut(s)	249
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	6 cut(s)	173, 744, 1116, 1395, 1446, 1569
StyD4I	CCNGG	3 cut(s)	456, 916, 1498
StyI	CCWWGG	3 cut(s)	319, 1394, 1457
TaaI	ACNGT	2 cut(s)	806, 989
TaiI	ACGT	5 cut(s)	75, 96, 228, 480, 551
TaqI	TCGA	3 cut(s)	390, 1159, 1373
TaqII	GACCGA	1 cut(s)	1260
TatI	WGTACW	1 cut(s)	1582
Tru1I	TTAA	4 cut(s)	54, 357, 629, 1535
Tru9I	TTAA	4 cut(s)	54, 357, 629, 1535
TscAI	CASTG	3 cut(s)	629, 1002, 1137
TseFI	GTSAC	4 cut(s)	486, 739, 1059, 1461
Tsp45I	GTSAC	4 cut(s)	486, 739, 1059, 1461
TspDTI	ATGAA	7 cut(s)	74, 114, 411, 548, 576, 651, 864
TspRI	CASTG	3 cut(s)	629, 1002, 1137
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	3 cut(s)	1278, 1311, 1404
XapI	RAATTY	3 cut(s)	195, 873, 1507
XceI	RCATGY	1 cut(s)	901
XmaJI	CCTAGG	1 cut(s)	1394
XmnI	GAANNNNTTC	2 cut(s)	81, 877
XspI	CTAG	6 cut(s)	173, 744, 1116, 1395, 1446, 1569
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.