Rorug05G0180700

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005908
Physical Location & Seq
Forward (+)
17383879 .. 17396509
12631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0180700.1

Sequence Viewer

Length: 6363 bp
ATGGCTTCCAAAGGTCCAAGGCCGAAGCTCGATCACGAACCCAGACCCAAGCGCCACAAGGCCCTTGAAGTTGCGAATGAACCTCGACGGCCAAAAGCTCATTGGGACCATGTTTTAGAAGAGATGATCTGGCTGTCAAAGGACTTTGAGTCGGAGAGAAAATGGAAATTGGCTCAGGCAAAGAAGGTTGCTTTACGAGCCAGCAAGGGCATGCTAGATCAGGCTACAAGGGGAGAAAAGAAAATGAAGGAAGAAGAGCAACGGATGAAAAAAGTTGCACTTAATATTTCAAAGGATGTGAAGAAATTCTGGCTGAAAATAGAAAAACTGGTGCTTTACAAACATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCGCTTGATAAACAGCTTGAGTTCCTTTTAGGTCAAACTGAGAGGTACTCAACAATGTTGGCAGAAAATCTTGCGGACAAGCCTGTGCAGCAATGTTCCACACAAGATCAACTGAGTATTGAAGGCACAGCTGTGGGCGAAAATGATATTAGCAAATCAGCAGAATTGAATGTCGAACCTCAATCAGATACAGCAGACGGTGATGATGATTATAATATGCAATCTGATGATGGATCAGGAGATGATGAAAACACGATTGAGGAAGATGAAGCTCTTTTTACTAAAGAAGAAAGACGGGAAGAATTGGCTGCTTTACAGAATGAAGTGGATGTTCCACTCGAGAAGCTACTCAAACAATATACTAGAAAGAAAGTTAACAGAGAAAGTAGTCAAGAAAAGGATGAAGATTATGTTGCAGAGATGACTTCTTCTGGGGAAGATGATGGTATATCTCCTGAAAAGGGTGAAGATGACACTGAAATGACCTCAGTGGGGAAAGATCATAGTATGAGTTCAGAAAAGGGTGAAGATGGTGCAGAAGTCATGTCTGTGGGGGAAGATCATGATATGTGTCATAAAACGGGTGAAGTTGGCGCAGAAATGACCTCATTGAGTGAAGATCATGGTGAACAAAACGATCTTCTTATAGCCAGTAAGACTGATAGAAGCAGCCCAGATGTTTTTACCGGTCGTCGTTGTGTTGGAAGTAATGGTGTGCCTATTTCAGAAACCCATTCATCCGAAATTAAGATTGGTGAAGCCAAAAATATTTCAGAAGCATCTCTGCAGTCTGCCAAAGGAAATATGCCATATGATTTTGATGATGAACATGAGGATGGTGACTTCATTCTTGCTGCTGGAGAAGAAAAGGATGATGAGACAACCTTATTAGAGGAGGAGGAATTGGCAAAAGCAGATACCAATCATCCCATGGATGAGATTGCATTACTGCAGAAGGAGAGTGAAATACCGTTAGAGGAATTGCTTGCAAGGTATAAAAAGGATTTGAGCGGTGATGAAGTTGCAGATGGTGAATCTGAATATGGTTCTGCTTTATCAGAGGGATTTACGGATTCTCCATCTCTAGAAGATTCTGAACTGAAGCAACATGTTTCTATCAATGAAGATGTTGACTCTGGTGAACACCAGCCAGCTCTTGATTCTCCAACTGAAGAACATAGGGCTTCAGAAGGAGGAAGTGATAGTGAGAACAGAATAGAGGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACAAAAGTCCGTACAAAGTTCCCCTTTCTTCTGAAGTTCCCTCTTCGTGAGTATCAGCATATTGGTTTGGATTGGCTTGTAACAATGTATGAGAAAAGGCTGAATGGGATTCTAGCCGACGAGATGGGGCTAGGGAAGACAATCATGACAATCGCTTTGCTTGCACACCTAGCCTGTGAAAAGGGCATATGGGGCCCTCATCTTATTGTGGTCCCAACCAGTGTAATGCTCAATTGGGAGACTGAGTTTCTAAAATGGTGCCCTGCTTTCAAAATCCTGACTTATTTTGGAAGTGCAAAAGAGCGCAAATTGAAGAGGCAAGGCTGGCTGAAACCAAACTCATTTCATGTCTGCATAACAACATATAGACTGGTTATACAAGATTCAAAAGTCTTCAAGCGTAAGAAATGGAAATACTTGATTTTAGATGAAGCCCATCTGATTAAAAATTGGAAGTCGCAGAGATGGCAAACACTTTTGAACTTCAATTCCAAACGACGCATTTTGTTAACTGGTACTCCTCTACAGAATGATCTCATGGAACTTTGGTCTCTAATGCATTTCTTGATGCCCCACATATTTCAGTCTCATCAGGAGTTCAAGGATTGGTTCAGTAATCCAATATCCGGGATGGTTGAGGGGCAAGAAAAAGTAAATAAAGAAGTTCTTGATCGTCTACATAATGTCCTCCGCCCATTCATTCTCCGCCGTTTGAAACGAGATGTGGAGAAACAGCTGCCTATGAAGCATGAGCATGTCATATACTGTAGACTTTCCAGGAGGCAACGCAACTTGTATGAAGACTTTATTGCTAGCTCAGAAACACAAGCAACTCTGGCAAGTACCAATTTTTTTGGAATGATAAGTATAATAATGCAACTTCGTAAAGTGTGCAATCATCCTGACTTATTTGAAGGTCGTCCAATTGTCAGTTCCTTTGATATGAATGGTATTTACATGCAACTGAGTTCTTCAATATGTTCAATGCTTTCGCCTGGACCATTTTCTGTGGTAGACCTTAAGGGATTGGGGTTTTTATTTACTCATCTAGATTTTTTGATGTCTTCTTGGGAGAGTGATGAAGTTAAAGCTCTTGCTACCCCATCAAGTTTAATTAAAGAGCGTGTTACCCGGATTCATCTTGAAGATATTGGTGGATTTAAACATCGTAAACATCACAAGAAGATGCATGGTATGAATATCTTCGAAGACATCCAGAAGGCACTTATGGAGGAGAGACTAAGGCAAGCAAAAGAACATGCTGCAGCCGTTGCATGGTGGAATTCCTTGAGGTGTGATAGAAAACCTATATACTCAACGAGCCTGAGGGATCTTGTTACAGTTAGACATCCTGTTGTTGATATTGCTCATCACAAGGCTAACCCTGTGTCCTATATGTACTCCTCAAAGCTTGCTGATATAGTTCTTTCACCAGTAGAACGCTTCCAGAAAACAATTGACCTGGTTGAAAGCTTCGTGTTTGCAATTCCAGCTGCACGAGCTGCCCCACCTGTATGCTGGTGCAGTAAATCTGAAAGTTCTGTGTTTCTGCAACCAACTTATAAGCAGAAATGCTCTGAAGTCTTGTCGCCACTTCTGTCACCATTTAGACCTGCAATTGTCCGTAGACAAGTATATTTTCCTGATAGGAGACTAATACAGTTTGACTGTGGTAAGTTGCAGCAGCTTGCAGTTTTGCTTAGGAAATTGAAGTCAGAAGGTCACAGAGCTTTGATATTCACTCAGATGACGAAGATGCTTGACGTCTTGGAGGCTTTCATCAATTTATATGGTTACACGTACATGCGTTTAGATGGATCCACTCCGCCTGAGGAGAGGCAGACTTTAATGCAGCGGTTTAACACAAACCCAAAATTTTTTCTTTTCATATTGTCAACTCGTAGTGGAGGTGTTGGTATTAACCTAGTTGGGGCAGATACAGTTATCTTTTATGATAGTGACTGGAATCCTGCTATGGACCAACAAGCTCAAGATCGTTGCCACCGGATTGGACAGACACGAGAAGTTCATATTTATCGATTGATCAGTGAGAGCACCATTGAAGAAAACATTTTGAAGAAAGCAAATCAGAAGCGGACTCTTGACAATCTAGTTATACAAAGTGGGGACTATAACACTGAATTCTTCAAAAAGCTTGATCCCATGGAGCTGTTTTCTGGTCATAGAGCGCTTCCCATTAAGAACATGCAAAAGGAGAAAAATCACAACACAACTGAAGTTTCTCTATCTAATGTGGACCTGGAAGCTGCACTAAAGCATGCAGAAGATGAAGCAGATTATATGGCATTAAAGAAAGTTGAGCAGGAAGAAGCTGTGGACAACCAAGAATTTACTGAAGAAGCCATTGTGAGATTGGAAGATGATGAATTAGTGAATGAGGATGACATGAAGGTTGATGAACCCACAGATCAGGGGGCTTTGATGATGATGTCTTCAAACAAAGACAGCAGAATGATGTTGAATGGGAGTGATCCTAATGAAGAAAGAGCTCTCACTGGTGCTTGTAGGGAAGATGATGTGGACATGATGGCTGATGTCAAACAGATGGCTGCAGCTGCTGCTGCCGCAGGACAAGAGATCTCATCCTTTGGAAATCAGTTACGTCCGATAGATCATTATGCAATTCGTTTTCTAGAATTGTGGGACCCAATAATAGACAAGACAGCAGCAGAATCTCAAGTTAGATTTGAGGAGAGAGAGTGGGAACTGGACCGCATAGAAAAGTACAAGGAGGAAATGGAAGCTGAGATTGATGAAGATGAAGAACCTCTTGTATATGAAACATGGGATGCTGAATTTGCAACTGAGGCATATCGGCAGCAGGTTGAAGCCTTGACTCAACACCAGTTGATGGAGGAACTGGAATATGAAGCCAAGGAGAAGGAAGATGAAGCAGATGAAAATCTTGATTCTCTGAGGTATGGGATGCCAAGTGATCCTAAACCCAAGCATAAGAAGAAATCGAAGAAAGCAAAATTTAAATCTCTGAAGAAACGGTCTCTAGCTTCTGAGCTGGAACCTGTTAAAGGAGAGCTGCAAGTGGAACCTATGTTCATAGATGAAGATTATCTCTCTAATGATGTGTTTTCCTATTCGGATATTGAATCACCTCATTCAAGTGTGCAGAAAAAACGCAAGAAGGCTGAATCTAAACCAGCTGGTGAAGATAAGATTTCAAAGAAGTCTAAGAAACTGAAGAAGTCTCATCTTGAAATCAGTACTTCAGAGTTTGATACTAGTGTCTCCTCAGTGCAGCATGTTGAAGCATCAGAGTTAAAACCATGTGAGAGTGTGGTTGAATTCGAGCATAAACCAATTAGTAGATCCAAAATGGGAGGGAAAATATCCATCACTGCCATGCCTGTAAAGCGAGTTCTAATGATAAAACCAGAGAAGCTAAAGAAGGGAAACATTTGGTCTAGAGATTGTATTCCATCACCAGATTTTTGGTTATCACAGGAGGATGCAATTTTATGTGCTGTGGTACATGAGTATGGCCCTTATTGGAGCTTGGTGAGTGAGACGCTTTATGGTATGACTGCTGGTGGGTTTTATAGGGGGAGATATCGCCATCCAATTCTTTGTTGTGAGAGGTTTAGGGAACTTATCCAAAGATATGTTTTCTCCGCTCCAGACAATCCTAATTATGAAAAGGTCAACAATATAGGATCTGGAAAAGCTCTTTTAAGAGTAACAGAGGAAAATATTCGAATGTTATTAAATGTTGCTGCCGAGCAGCCCAATACAGAATATTTGATTCAGAAACACTTCATTGCCCTGCTATCCTCTGTCTGGAAGATGGCATCTCACAAAGACGGGAGACAAAATCTCCCATCTTCTGGGAATGGTGTATATTTTGGCGGAAAATTTTTCAGTTCTTCCAACCAAATTTCCCGGACTTCAGTGAAGGAAAACACAGCAACCATGAAATTTACCAATTTTGGACAGGGTGCCAGGTTGGTAGCAGCTGCACTTAATGATGCCAGCAGCAGGCGAGGGGATGAGTGTGTCATTTCTCCCAACCCTAGGAAAAAATCGTCAACCAATGCTGAACAGTTGGATATAACTCTGGACTTTCAGGCACAAAAGGATGACTCCACAGATCCATTTCCATCTGTTATCAATTTATCAATATCTGATATAGGCCCTCCATCAGAAAATAAGGCAATGGAACCGTATCTTCTCAGAGATTCCTGTAATGACTATTGCAAAAGCACCAGTGATGCAAATGTGGCTGAGAACCGTTTCAGGAATGCAACAAGAGCTTGCGATGAAGATACTATGGGGTGGGCTTCATCGACATTCCCGACATATGATGTCAGGTCTCGATCAGTGTCAAAGTTACCTTCCTCAGGAAAGCACAAGCTTGTCTTCTCCGATCCAGTTAGACCTTCAAAATCCAAGTTCAGAAAAAATGCAGTAGAGCATGGTGAGATGCGTCACTTTCTGGCTGAGCATGTATTCCCACCCTTGCCAATAGCTGCACCGCTGAATCCCAGTCCAAGGTTCGACCTGAACCTTCCTGTCAACGAGGATATTGAGACTGGTGATCTGGAAAGCACTTCCCATTCTCAGGTGGTTGAGTGTTCATTTGAAGAAAGCTTTGGAGTTCTCCCACATGAATATGTTCCTGAATTGCTTTCAGGCCTTGATGACTGTTCATTATTGCCAGAATATGATGACATTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

2120

Amino Acids

241.21

Weight (kDa)

5.37

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSA PF07529 27 - 93 3.6e-14 HSA domain
ResIII PF04851 563 - 724 2.4e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 568 - 853 2.4e-89 SNF2-related domain
DEAD PF00270 585 - 725 7.8e-08 DEAD/DEAH box helicase
Helicase_C PF00271 1109 - 1221 2.3e-26 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 588, 3213
AatII GACGTC 1 cut(s) 3417
Acc36I ACCTGC 2 cut(s) 3271, 4483
AccB1I GGYRCC 2 cut(s) 1908, 5621
AccB7I CCANNNNNTGG 2 cut(s) 4522, 5510
AccBSI CCGCTC 2 cut(s) 1386, 5300
AccI GTMKAC 4 cut(s) 2326, 2419, 2664, 3277
AcoI YGGCCR 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 3414
AfaI GTAC 9 cut(s) 422, 1663, 2167, 2494, 3050, 3452, 4397, 4891, 5157
AfeI AGCGCT 1 cut(s) 3840
AflII CTTAAG 1 cut(s) 2669
AflIII ACRYGT 2 cut(s) 1483, 3447
AgeI ACCGGT 1 cut(s) 1061
AhdI GACNNNNNGTC 1 cut(s) 148
AhlI ACTAGT 1 cut(s) 4907
AjnI CCWGG 5 cut(s) 2426, 2644, 3111, 3909, 5624
AjuI GAANNNNNNNTTGG 6 cut(s) 1110, 1142, 2566, 2598, 6258, 6290
AleI CACNNNNGTG 1 cut(s) 506
AloI GAACNNNNNNTCC 4 cut(s) 2123, 2155, 4706, 4738
Alw21I GWGCWC 2 cut(s) 3707, 4162
AlwNI CAGNNNCTG 2 cut(s) 1607, 4229
Ama87I CYCGRG 1 cut(s) 713
Aor51HI AGCGCT 1 cut(s) 3840
AoxI GGCC 7 cut(s) 20, 60, 89, 1843, 5167, 5815, 6316
ApaI GGGCCC 1 cut(s) 1847
ArsI GACNNNNNNTTYG 2 cut(s) 1789, 1821
AsiGI ACCGGT 1 cut(s) 1061
Asp700I GAANNNNTTC 6 cut(s) 305, 2852, 5376, 5438, 5915, 6297
AspA2I CCTAGG 1 cut(s) 5696
AspLEI GCGC 5 cut(s) 54, 379, 971, 1956, 3841
AsuC2I CCSGG 3 cut(s) 2278, 2782, 5566
AsuII TTCGAA 2 cut(s) 2856, 5380
AsuNHI GCTAGC 1 cut(s) 2462
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 8 cut(s) 14, 106, 1861, 2648, 3628, 3907, 4315, 4381
AvrII CCTAGG 1 cut(s) 5696
AxyI CCTNAGG 3 cut(s) 2975, 3480, 6022
BaeGI GKGCMC 2 cut(s) 1847, 1913
BaeI ACNNNNGTAYC 4 cut(s) 4896, 4929, 5147, 5180
BamHI GGATCC 1 cut(s) 3467
BanI GGYRCC 2 cut(s) 1908, 5621
BanII GRGCYC 2 cut(s) 1847, 4162
BauI CACGAG 2 cut(s) 3147, 3669
BbsI GAAGAC 7 cut(s) 1793, 2035, 2457, 2706, 2865, 4095, 6034
Bbv12I GWGCWC 2 cut(s) 3707, 4162
BceAI ACGGC 3 cut(s) 104, 2343, 2903
BciT130I CCWGG 5 cut(s) 2428, 2646, 3113, 3911, 5626
BclI TGATCA 1 cut(s) 3693
BcnI CCSGG 3 cut(s) 2278, 2782, 5566
BcuI ACTAGT 1 cut(s) 4907
BfmI CTRYAG 6 cut(s) 1160, 1325, 2174, 2416, 2913, 4221
BfoI RGCGCY 3 cut(s) 55, 380, 3842
BfrI CTTAAG 1 cut(s) 2669
BfuAI ACCTGC 2 cut(s) 3271, 4483
BglII AGATCT 1 cut(s) 4248
BlnI CCTAGG 1 cut(s) 5696
BlpI GCTNAGC 1 cut(s) 6123
BmcAI AGTACT 1 cut(s) 4891
Bme1390I CCNGG 8 cut(s) 2278, 2428, 2646, 2782, 3113, 3911, 5566, 5626
Bme18I GGWCC 8 cut(s) 14, 106, 1861, 2648, 3628, 3907, 4315, 4381
BmeRI GACNNNNNGTC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 713
BmrFI CCNGG 8 cut(s) 2278, 2428, 2646, 2782, 3113, 3911, 5566, 5626
BmrI ACTGGG 1 cut(s) 6162
BmtI GCTAGC 1 cut(s) 2466
BmuI ACTGGG 1 cut(s) 6162
BpiI GAAGAC 7 cut(s) 1793, 2035, 2457, 2706, 2865, 4095, 6034
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 2 cut(s) 1254, 5286
Bpu10I CCTNAGC 2 cut(s) 174, 3350
Bpu1102I GCTNAGC 1 cut(s) 6123
Bpu14I TTCGAA 2 cut(s) 2856, 5380
BpuEI CTTGAG 4 cut(s) 413, 2959, 3624, 4332
BpuMI CCSGG 3 cut(s) 2278, 2782, 5566
Bsa29I ATCGAT 1 cut(s) 3688
BsaAI YACGTR 1 cut(s) 3450
BsaBI GATNNNNATC 2 cut(s) 1296, 4572
BsaHI GRCGYC 1 cut(s) 3414
BsaI GGTCTC 3 cut(s) 2205, 4674, 6000
BsaJI CCNNGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
BsaWI WCCGGW 2 cut(s) 1061, 3654
Bse118I RCCGGY 1 cut(s) 1061
Bse21I CCTNAGG 3 cut(s) 2975, 3480, 6022
Bse3DI GCAATG 4 cut(s) 473, 5442, 5844, 6354
Bse8I GATNNNNATC 2 cut(s) 1296, 4572
BseBI CCWGG 5 cut(s) 2428, 2646, 3113, 3911, 5626
BseCI ATCGAT 1 cut(s) 3688
BseDI CCNNGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
BseJI GATNNNNATC 2 cut(s) 1296, 4572
BseMI GCAATG 4 cut(s) 473, 5442, 5844, 6354
BseRI GAGGAG 8 cut(s) 1283, 1286, 2160, 2897, 3043, 3497, 4376, 4906
BseSI GKGCMC 2 cut(s) 1847, 1913
BsgI GTGCAG 9 cut(s) 482, 930, 3129, 3193, 3903, 4814, 4943, 5625, 6138
Bsh1285I CGRYCG 1 cut(s) 1066
BshFI GGCC 7 cut(s) 22, 62, 91, 1845, 5169, 5817, 6318
BshNI GGYRCC 2 cut(s) 1908, 5621
BshTI ACCGGT 1 cut(s) 1061
BshVI ATCGAT 1 cut(s) 3688
BsiEI CGRYCG 1 cut(s) 1066
BsiHKAI GWGCWC 2 cut(s) 3707, 4162
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 5 cut(s) 1062, 2277, 2782, 3655, 5566
BslFI GGGAC 4 cut(s) 119, 1847, 3791, 4328
BsmBI CGTCTC 1 cut(s) 5186
BsmFI GGGAC 4 cut(s) 119, 1847, 3791, 4328
BsmI GAATGC 1 cut(s) 5929
BsnI GGCC 7 cut(s) 22, 62, 91, 1845, 5169, 5817, 6318
Bso31I GGTCTC 3 cut(s) 2205, 4674, 6000
BsoBI CYCGRG 1 cut(s) 713
Bsp119I TTCGAA 2 cut(s) 2856, 5380
Bsp120I GGGCCC 1 cut(s) 1843
Bsp1286I GDGCHC 4 cut(s) 1847, 1913, 3707, 4162
Bsp1720I GCTNAGC 1 cut(s) 6123
Bsp19I CCATGG 2 cut(s) 1305, 3813
BspANI GGCC 7 cut(s) 22, 62, 91, 1845, 5169, 5817, 6318
BspDI ATCGAT 1 cut(s) 3688
BspHI TCATGA 2 cut(s) 937, 1794
BspMAI CTGCAG 4 cut(s) 1164, 1329, 2917, 4225
BspMI ACCTGC 2 cut(s) 3271, 4483
BspOI GCTAGC 1 cut(s) 2466
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 2 cut(s) 2856, 5380
BspT107I GGYRCC 2 cut(s) 1908, 5621
BspTI CTTAAG 1 cut(s) 2669
BspTNI GGTCTC 3 cut(s) 2205, 4674, 6000
BsrBI CCGCTC 2 cut(s) 1386, 5300
BsrDI GCAATG 4 cut(s) 473, 5442, 5844, 6354
BsrFI RCCGGY 1 cut(s) 1061
BssAI RCCGGY 1 cut(s) 1061
BssECI CCNNGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
BssNI GRCGYC 1 cut(s) 3414
BssSI CACGAG 2 cut(s) 3147, 3669
BssT1I CCWWGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
Bst2BI CACGAG 2 cut(s) 3147, 3669
Bst2UI CCWGG 5 cut(s) 2428, 2646, 3113, 3911, 5626
Bst6I CTCTTC 4 cut(s) 114, 249, 1698, 1958
BstACI GRCGYC 1 cut(s) 3414
BstAFI CTTAAG 1 cut(s) 2669
BstAPI GCANNNNNTGC 4 cut(s) 1607, 2921, 3152, 4229
BstBAI YACGTR 1 cut(s) 3450
BstBI TTCGAA 2 cut(s) 2856, 5380
BstDSI CCRYGG 2 cut(s) 1305, 3813
BstENI CCTNNNNNAGG 2 cut(s) 4695, 6021
BstH2I RGCGCY 3 cut(s) 55, 380, 3842
BstHHI GCGC 5 cut(s) 54, 379, 971, 1956, 3841
BstMCI CGRYCG 1 cut(s) 1066
BstNI CCWGG 5 cut(s) 2428, 2646, 3113, 3911, 5626
BstSCI CCNGG 8 cut(s) 2276, 2426, 2644, 2780, 3111, 3909, 5564, 5624
BstSFI CTRYAG 6 cut(s) 1160, 1325, 2174, 2416, 2913, 4221
BstSLI GKGCMC 2 cut(s) 1847, 1913
BstV2I GAAGAC 7 cut(s) 1793, 2035, 2457, 2706, 2865, 4095, 6034
BstX2I RGATCY 6 cut(s) 2980, 3467, 4248, 4994, 5339, 5773
BstXI CCANNNNNNTGG 2 cut(s) 3659, 5118
BstYI RGATCY 6 cut(s) 2980, 3467, 4248, 4994, 5339, 5773
Bsu15I ATCGAT 1 cut(s) 3688
Bsu36I CCTNAGG 3 cut(s) 2975, 3480, 6022
BsuRI GGCC 7 cut(s) 22, 62, 91, 1845, 5169, 5817, 6318
BsuTUI ATCGAT 1 cut(s) 3688
BtgI CCRYGG 2 cut(s) 1305, 3813
BtgZI GCGATG 1 cut(s) 5955
BtsI GCAGTG 1 cut(s) 5022
BveI ACCTGC 2 cut(s) 3271, 4483
CaiI CAGNNNCTG 2 cut(s) 1607, 4229
CciI TCATGA 2 cut(s) 937, 1794
CfoI GCGC 5 cut(s) 54, 379, 971, 1956, 3841
Cfr10I RCCGGY 1 cut(s) 1061
ClaI ATCGAT 1 cut(s) 3688
CseI GACGC 3 cut(s) 2157, 5203, 6098
CsiI ACCWGGT 1 cut(s) 3111
Csp6I GTAC 9 cut(s) 421, 1662, 2166, 2493, 3049, 3451, 4396, 4890, 5156
CspAI ACCGGT 1 cut(s) 1061
CviQI GTAC 9 cut(s) 421, 1662, 2166, 2493, 3049, 3451, 4396, 4890, 5156
DraI TTTAAA 2 cut(s) 2812, 4651
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 89
Eam1104I CTCTTC 4 cut(s) 114, 249, 1698, 1958
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 4 cut(s) 114, 249, 1698, 1958
EciI GGCGGA 4 cut(s) 2330, 2345, 3465, 5547
Ecl136II GAGCTC 1 cut(s) 4160
Eco130I CCWWGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
Eco147I AGGCCT 1 cut(s) 6318
Eco24I GRGCYC 2 cut(s) 1847, 4162
Eco31I GGTCTC 3 cut(s) 2205, 4674, 6000
Eco32I GATATC 1 cut(s) 5237
Eco47I GGWCC 8 cut(s) 14, 106, 1861, 2648, 3628, 3907, 4315, 4381
Eco47III AGCGCT 1 cut(s) 3840
Eco53kI GAGCTC 1 cut(s) 4160
Eco81I CCTNAGG 3 cut(s) 2975, 3480, 6022
Eco88I CYCGRG 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 4160
EcoNI CCTNNNNNAGG 2 cut(s) 4695, 6021
EcoO109I RGGNCCY 5 cut(s) 61, 1843, 1844, 4315, 5816
EcoRI GAATTC 3 cut(s) 2932, 3791, 4970
EcoRII CCWGG 5 cut(s) 2426, 2644, 3111, 3909, 5624
EcoRV GATATC 1 cut(s) 5237
EcoT14I CCWWGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
EcoT22I ATGCAT 2 cut(s) 2211, 2841
EcoT38I GRGCYC 2 cut(s) 1847, 4162
ErhI CCWWGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
Esp3I CGTCTC 1 cut(s) 5186
FaqI GGGAC 4 cut(s) 119, 1847, 3791, 4328
FauNDI CATATG 3 cut(s) 1186, 1838, 5983
FbaI TGATCA 1 cut(s) 3693
FblI GTMKAC 4 cut(s) 2326, 2419, 2664, 3277
FriOI GRGCYC 2 cut(s) 1847, 4162
GlaI GCGC 5 cut(s) 53, 378, 970, 1955, 3840
GsuI CTGGAG 2 cut(s) 1254, 5286
HaeII RGCGCY 3 cut(s) 55, 380, 3842
HaeIII GGCC 7 cut(s) 22, 62, 91, 1845, 5169, 5817, 6318
HapII CCGG 5 cut(s) 1062, 2277, 2782, 3655, 5566
HgaI GACGC 3 cut(s) 2157, 5203, 6098
HhaI GCGC 5 cut(s) 54, 379, 971, 1956, 3841
Hin1I GRCGYC 1 cut(s) 3414
Hin6I GCGC 5 cut(s) 52, 377, 969, 1954, 3839
HinP1I GCGC 5 cut(s) 52, 377, 969, 1954, 3839
HincII GTYRAC 7 cut(s) 751, 1507, 2160, 3546, 5329, 5712, 6199
HindII GTYRAC 7 cut(s) 751, 1507, 2160, 3546, 5329, 5712, 6199
HindIII AAGCTT 5 cut(s) 3059, 3121, 3803, 6035, 6271
HpaI GTTAAC 2 cut(s) 751, 2160
HpaII CCGG 5 cut(s) 1062, 2277, 2782, 3655, 5566
Hpy99I CGWCG 4 cut(s) 90, 1071, 1772, 2151
HpyCH4IV ACGT 3 cut(s) 3414, 3449, 4273
HpySE526I ACGT 3 cut(s) 3414, 3449, 4273
Hsp92I GRCGYC 1 cut(s) 3414
HspAI GCGC 5 cut(s) 52, 377, 969, 1954, 3839
KflI GGGWCCC 1 cut(s) 4315
Ksp22I TGATCA 1 cut(s) 3693
KspAI GTTAAC 2 cut(s) 751, 2160
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 352, 3817, 5178, 5305
MabI ACCWGGT 1 cut(s) 3111
MaeII ACGT 3 cut(s) 3414, 3449, 4273
MbiI CCGCTC 2 cut(s) 1386, 5300
MfeI CAATTG 4 cut(s) 1882, 2574, 3105, 3267
MflI RGATCY 6 cut(s) 2980, 3467, 4248, 4994, 5339, 5773
MhlI GDGCHC 4 cut(s) 1847, 1913, 3707, 4162
MlyI GAGTC 5 cut(s) 158, 1502, 3742, 4501, 5759
MmeI TCCRAC 5 cut(s) 132, 1057, 1565, 5577, 5709
Mph1103I ATGCAT 2 cut(s) 2211, 2841
MroXI GAANNNNTTC 6 cut(s) 305, 2852, 5376, 5438, 5915, 6297
MspA1I CMGCKG 9 cut(s) 506, 1604, 2386, 3143, 3505, 4226, 4829, 5639, 6160
MspCI CTTAAG 1 cut(s) 2669
MspI CCGG 5 cut(s) 1062, 2277, 2782, 3655, 5566
MspR9I CCNGG 8 cut(s) 2278, 2428, 2646, 2782, 3113, 3911, 5566, 5626
MunI CAATTG 4 cut(s) 1882, 2574, 3105, 3267
Mva1269I GAATGC 1 cut(s) 5929
MvaI CCWGG 5 cut(s) 2428, 2646, 3113, 3911, 5626
NciI CCSGG 3 cut(s) 2278, 2782, 5566
NcoI CCATGG 2 cut(s) 1305, 3813
NdeI CATATG 3 cut(s) 1186, 1838, 5983
NheI GCTAGC 1 cut(s) 2462
NmeAIII GCCGAG 1 cut(s) 5428
NmuCI GTSAC 5 cut(s) 1214, 3249, 3371, 3608, 6110
NsiI ATGCAT 2 cut(s) 2211, 2841
NspV TTCGAA 2 cut(s) 2856, 5380
OliI CACNNNNGTG 1 cut(s) 506
PacI TTAATTAA 1 cut(s) 2766
PaeI GCATGC 2 cut(s) 214, 3932
PaeR7I CTCGAG 1 cut(s) 713
PagI TCATGA 2 cut(s) 937, 1794
PceI AGGCCT 1 cut(s) 6318
PciI ACATGT 1 cut(s) 1483
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 5975
PctI GAATGC 1 cut(s) 5929
PdmI GAANNNNTTC 6 cut(s) 305, 2852, 5376, 5438, 5915, 6297
PflMI CCANNNNNTGG 2 cut(s) 4522, 5510
PfoI TCCNGGA 3 cut(s) 2276, 2426, 5564
PinAI ACCGGT 1 cut(s) 1061
PleI GAGTC 5 cut(s) 157, 1502, 3742, 4501, 5759
PpsI GAGTC 5 cut(s) 157, 1502, 3742, 4501, 5759
Ppu21I YACGTR 1 cut(s) 3450
PpuMI RGGWCCY 1 cut(s) 4315
PscI ACATGT 1 cut(s) 1483
PsiI TTATAA 2 cut(s) 588, 3213
Psp124BI GAGCTC 1 cut(s) 4162
Psp5II RGGWCCY 1 cut(s) 4315
Psp6I CCWGG 5 cut(s) 2426, 2644, 3111, 3909, 5624
PspGI CCWGG 5 cut(s) 2426, 2644, 3111, 3909, 5624
PspOMI GGGCCC 1 cut(s) 1843
PspPPI RGGWCCY 1 cut(s) 4315
PsrI GAACNNNNNNTAC 2 cut(s) 5028, 5060
PstI CTGCAG 4 cut(s) 1164, 1329, 2917, 4225
PstNI CAGNNNCTG 2 cut(s) 1607, 4229
PsuI RGATCY 6 cut(s) 2980, 3467, 4248, 4994, 5339, 5773
PvuII CAGCTG 7 cut(s) 506, 1604, 2386, 3143, 4226, 4829, 5639
RsaI GTAC 9 cut(s) 422, 1663, 2167, 2494, 3050, 3452, 4397, 4891, 5157
RsaNI GTAC 9 cut(s) 421, 1662, 2166, 2493, 3049, 3451, 4396, 4890, 5156
SacI GAGCTC 1 cut(s) 4162
SapI GCTCTTC 1 cut(s) 249
ScaI AGTACT 1 cut(s) 4891
SchI GAGTC 5 cut(s) 158, 1502, 3742, 4501, 5759
ScrFI CCNGG 8 cut(s) 2278, 2428, 2646, 2782, 3113, 3911, 5566, 5626
SduI GDGCHC 4 cut(s) 1847, 1913, 3707, 4162
SexAI ACCWGGT 1 cut(s) 3111
SfcI CTRYAG 6 cut(s) 1160, 1325, 2174, 2416, 2913, 4221
Sfr274I CTCGAG 1 cut(s) 713
SfuI TTCGAA 2 cut(s) 2856, 5380
SinI GGWCC 8 cut(s) 14, 106, 1861, 2648, 3628, 3907, 4315, 4381
SlaI CTCGAG 1 cut(s) 713
SmiI ATTTAAAT 1 cut(s) 4651
SmlI CTYRAG 6 cut(s) 392, 713, 2669, 2938, 3639, 4347
SmoI CTYRAG 6 cut(s) 392, 713, 2669, 2938, 3639, 4347
SpeI ACTAGT 1 cut(s) 4907
SphI GCATGC 2 cut(s) 214, 3932
SseBI AGGCCT 1 cut(s) 6318
SspI AATATT 4 cut(s) 286, 1144, 5377, 5423
SstI GAGCTC 1 cut(s) 4162
StuI AGGCCT 1 cut(s) 6318
StyD4I CCNGG 8 cut(s) 2276, 2426, 2644, 2780, 3111, 3909, 5564, 5624
StyI CCWWGG 6 cut(s) 17, 1305, 3813, 4545, 5696, 6173
SwaI ATTTAAAT 1 cut(s) 4651
TaiI ACGT 3 cut(s) 3417, 3452, 4276
TatI WGTACW 3 cut(s) 3048, 4395, 4889
TauI GCSGC 1 cut(s) 4238
TseFI GTSAC 5 cut(s) 1214, 3249, 3371, 3608, 6110
Tsp45I GTSAC 5 cut(s) 1214, 3249, 3371, 3608, 6110
TspGWI ACGGA 4 cut(s) 277, 1460, 1649, 3263
Van91I CCANNNNNTGG 2 cut(s) 4522, 5510
Vha464I CTTAAG 1 cut(s) 2669
VpaK11BI GGWCC 8 cut(s) 14, 106, 1861, 2648, 3628, 3907, 4315, 4381
XagI CCTNNNNNAGG 2 cut(s) 4695, 6021
XbaI TCTAGA 4 cut(s) 1459, 2698, 4303, 5090
XcmI CCANNNNNNNNNTGG 4 cut(s) 99, 1303, 3165, 4021
XhoI CTCGAG 1 cut(s) 713
XmaJI CCTAGG 1 cut(s) 5696
XmiI GTMKAC 4 cut(s) 2326, 2419, 2664, 3277
XmnI GAANNNNTTC 6 cut(s) 305, 2852, 5376, 5438, 5915, 6297
ZraI GACGTC 1 cut(s) 3415
ZrmI AGTACT 1 cut(s) 4891
Zsp2I ATGCAT 2 cut(s) 2211, 2841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.