RNA recognition motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 |
| malus_domestica | MD03G1200600.v1.1 |
| prunus_persica | Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0039641 |
| rosa_laevigata | RLG00000033933 |
| rosa_multiflora | Rmu_ssc0000400.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00041570 |
| rosa_rugosa | Rorug05G0180400 Rorug05G0180500 Rorug05G0180600 Rorug05G0180700 Rorug05G0180800 |
| rosa_samantha | Rh5AG267600 Rh5BG271900 Rh5CG304500 Rh5DG279600 |
| rosa_wichuraiana | Rw5G025010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 532 |
| Acc36I | ACCTGC | 1 cut(s) | 532 |
| AccB1I | GGYRCC | 2 cut(s) | 993, 1231 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 668 |
| AccI | GTMKAC | 2 cut(s) | 2339, 2620 |
| AccII | CGCG | 1 cut(s) | 1074 |
| AciI | CCGC | 5 cut(s) | 292, 420, 747, 2055, 2654 |
| AclWI | GGATC | 6 cut(s) | 422, 538, 801, 943, 1615, 2298 |
| AcoI | YGGCCR | 1 cut(s) | 293 |
| AcsI | RAATTY | 9 cut(s) | 262, 714, 779, 1175, 1326, 1620, 1757, 1785, 2303 |
| AcuI | CTGAAG | 1 cut(s) | 1332 |
| AdeI | CACNNNGTG | 1 cut(s) | 1750 |
| AfaI | GTAC | 5 cut(s) | 59, 845, 1027, 1204, 1546 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 668, 687, 688, 1954, 1971, 2054 |
| AflII | CTTAAG | 1 cut(s) | 1033 |
| AflIII | ACRYGT | 1 cut(s) | 1394 |
| AhlI | ACTAGT | 1 cut(s) | 1066 |
| AjnI | CCWGG | 3 cut(s) | 586, 1467, 2821 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 699, 731 |
| Alw21I | GWGCWC | 1 cut(s) | 1573 |
| Alw26I | GTCTC | 3 cut(s) | 330, 636, 1269 |
| AlwI | GGATC | 6 cut(s) | 422, 538, 801, 943, 1615, 2298 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2786 |
| AoxI | GGCC | 5 cut(s) | 293, 671, 1464, 2117, 2315 |
| ApaI | GGGCCC | 1 cut(s) | 1468 |
| ApeKI | GCWGC | 3 cut(s) | 149, 152, 1664 |
| ApoI | RAATTY | 9 cut(s) | 262, 714, 779, 1175, 1326, 1620, 1757, 1785, 2303 |
| AspLEI | GCGC | 3 cut(s) | 454, 1074, 1076 |
| AspS9I | GGNCC | 5 cut(s) | 671, 691, 1464, 1465, 1974 |
| AsuC2I | CCSGG | 3 cut(s) | 226, 1200, 1748 |
| AsuHPI | GGTGA | 6 cut(s) | 333, 670, 1236, 1515, 1832, 1969 |
| AsuII | TTCGAA | 1 cut(s) | 2500 |
| AsuNHI | GCTAGC | 1 cut(s) | 1417 |
| AvaII | GGWCC | 2 cut(s) | 691, 1974 |
| AxyI | CCTNAGG | 2 cut(s) | 1584, 2424 |
| BaeGI | GKGCMC | 3 cut(s) | 624, 1308, 1468 |
| BanI | GGYRCC | 2 cut(s) | 993, 1231 |
| BanII | GRGCYC | 3 cut(s) | 1468, 1573, 2497 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 827, 859 |
| BauI | CACGAG | 1 cut(s) | 954 |
| BbsI | GAAGAC | 2 cut(s) | 1191, 1397 |
| Bbv12I | GWGCWC | 1 cut(s) | 1573 |
| BbvCI | CCTCAGC | 1 cut(s) | 2562 |
| BbvI | GCAGC | 3 cut(s) | 136, 164, 1651 |
| BceAI | ACGGC | 1 cut(s) | 2023 |
| BciT130I | CCWGG | 3 cut(s) | 588, 1469, 2823 |
| BciVI | GTATCC | 2 cut(s) | 1149, 1339 |
| BclI | TGATCA | 5 cut(s) | 15, 66, 91, 114, 871 |
| BcnI | CCSGG | 3 cut(s) | 226, 1200, 1748 |
| BcoDI | GTCTC | 3 cut(s) | 330, 636, 1269 |
| BcuI | ACTAGT | 1 cut(s) | 1066 |
| BfaI | CTAG | 6 cut(s) | 989, 1067, 1418, 1536, 1542, 2319 |
| BfmI | CTRYAG | 4 cut(s) | 150, 271, 435, 1668 |
| BfrI | CTTAAG | 1 cut(s) | 1033 |
| BfuAI | ACCTGC | 1 cut(s) | 532 |
| BfuI | GTATCC | 2 cut(s) | 1149, 1339 |
| BisI | GCNGC | 5 cut(s) | 150, 153, 293, 1665, 2056 |
| BlpI | GCTNAGC | 1 cut(s) | 2400 |
| BlsI | GCNGC | 5 cut(s) | 151, 154, 294, 1666, 2057 |
| BmcAI | AGTACT | 1 cut(s) | 1546 |
| Bme1390I | CCNGG | 6 cut(s) | 226, 588, 1200, 1469, 1748, 2823 |
| Bme18I | GGWCC | 2 cut(s) | 691, 1974 |
| BmgT120I | GGNCC | 5 cut(s) | 671, 691, 1464, 1465, 1974 |
| BmiI | GGNNCC | 8 cut(s) | 692, 693, 995, 1233, 1466, 1976, 2223, 2494 |
| BmrFI | CCNGG | 6 cut(s) | 226, 588, 1200, 1469, 1748, 2823 |
| BmsI | GCATC | 5 cut(s) | 888, 1139, 1566, 2042, 2816 |
| BmtI | GCTAGC | 1 cut(s) | 1421 |
| BpiI | GAAGAC | 2 cut(s) | 1191, 1397 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 506, 538, 2132, 2164 |
| BpmI | CTGGAG | 2 cut(s) | 1251, 2508 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2562 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2400 |
| Bpu14I | TTCGAA | 1 cut(s) | 2500 |
| BpuEI | CTTGAG | 2 cut(s) | 187, 2749 |
| BpuMI | CCSGG | 3 cut(s) | 226, 1200, 1748 |
| Bsa29I | ATCGAT | 1 cut(s) | 772 |
| BsaBI | GATNNNNATC | 1 cut(s) | 870 |
| BsaI | GGTCTC | 1 cut(s) | 636 |
| BsaJI | CCNNGG | 6 cut(s) | 76, 372, 682, 1467, 1913, 2225 |
| BsaWI | WCCGGW | 1 cut(s) | 790 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2263, 2293 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 668, 687, 688, 1954, 1971, 2054 |
| Bse1I | ACTGG | 5 cut(s) | 1033, 1150, 1268, 2070, 2309 |
| Bse21I | CCTNAGG | 2 cut(s) | 1584, 2424 |
| Bse3DI | GCAATG | 3 cut(s) | 622, 948, 2676 |
| Bse8I | GATNNNNATC | 1 cut(s) | 870 |
| BseBI | CCWGG | 3 cut(s) | 588, 1469, 2823 |
| BseCI | ATCGAT | 1 cut(s) | 772 |
| BseDI | CCNNGG | 6 cut(s) | 76, 372, 682, 1467, 1913, 2225 |
| BseJI | GATNNNNATC | 1 cut(s) | 870 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 668, 687, 688, 1954, 1971, 2054 |
| BseMI | GCAATG | 3 cut(s) | 622, 948, 2676 |
| BseMII | CTCAG | 4 cut(s) | 1598, 1758, 2414, 2553 |
| BseNI | ACTGG | 5 cut(s) | 1033, 1150, 1268, 2070, 2309 |
| BsePI | GCGCGC | 1 cut(s) | 1072 |
| BseRI | GAGGAG | 4 cut(s) | 741, 2137, 2505, 2835 |
| BseSI | GKGCMC | 3 cut(s) | 624, 1308, 1468 |
| BseXI | GCAGC | 3 cut(s) | 136, 164, 1651 |
| Bsh1236I | CGCG | 1 cut(s) | 1074 |
| BshFI | GGCC | 5 cut(s) | 295, 673, 1466, 2119, 2317 |
| BshNI | GGYRCC | 2 cut(s) | 993, 1231 |
| BshVI | ATCGAT | 1 cut(s) | 772 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1573 |
| BsiSI | CCGG | 4 cut(s) | 225, 791, 1199, 1747 |
| BslFI | GGGAC | 5 cut(s) | 182, 704, 1627, 1931, 2734 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 668, 687, 688, 1954, 1971, 2054 |
| BsmAI | GTCTC | 3 cut(s) | 330, 636, 1269 |
| BsmFI | GGGAC | 5 cut(s) | 182, 704, 1627, 1931, 2734 |
| BsnI | GGCC | 5 cut(s) | 295, 673, 1466, 2119, 2317 |
| Bso31I | GGTCTC | 1 cut(s) | 636 |
| Bsp119I | TTCGAA | 1 cut(s) | 2500 |
| Bsp120I | GGGCCC | 1 cut(s) | 1464 |
| Bsp1286I | GDGCHC | 5 cut(s) | 624, 1308, 1468, 1573, 2497 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2400 |
| Bsp19I | CCATGG | 2 cut(s) | 76, 1913 |
| BspACI | CCGC | 5 cut(s) | 292, 420, 747, 2055, 2654 |
| BspANI | GGCC | 5 cut(s) | 295, 673, 1466, 2119, 2317 |
| BspCNI | CTCAG | 4 cut(s) | 1597, 1759, 2413, 2554 |
| BspDI | ATCGAT | 1 cut(s) | 772 |
| BspFNI | CGCG | 1 cut(s) | 1074 |
| BspLI | GGNNCC | 8 cut(s) | 692, 693, 995, 1233, 1466, 1976, 2223, 2494 |
| BspMAI | CTGCAG | 1 cut(s) | 154 |
| BspMI | ACCTGC | 1 cut(s) | 532 |
| BspOI | GCTAGC | 1 cut(s) | 1421 |
| BspPI | GGATC | 6 cut(s) | 422, 538, 801, 943, 1615, 2298 |
| BspT104I | TTCGAA | 1 cut(s) | 2500 |
| BspT107I | GGYRCC | 2 cut(s) | 993, 1231 |
| BspTI | CTTAAG | 1 cut(s) | 1033 |
| BspTNI | GGTCTC | 1 cut(s) | 636 |
| BsrDI | GCAATG | 3 cut(s) | 622, 948, 2676 |
| BsrI | ACTGG | 5 cut(s) | 1033, 1150, 1268, 2070, 2309 |
| BssECI | CCNNGG | 6 cut(s) | 76, 372, 682, 1467, 1913, 2225 |
| BssHII | GCGCGC | 1 cut(s) | 1072 |
| BssSI | CACGAG | 1 cut(s) | 954 |
| BssT1I | CCWWGG | 5 cut(s) | 76, 372, 682, 1913, 2225 |
| Bst2BI | CACGAG | 1 cut(s) | 954 |
| Bst2UI | CCWGG | 3 cut(s) | 588, 1469, 2823 |
| Bst4CI | ACNGT | 3 cut(s) | 666, 1106, 1351 |
| Bst6I | CTCTTC | 4 cut(s) | 104, 834, 2166, 2871 |
| BstAFI | CTTAAG | 1 cut(s) | 1033 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2419 |
| BstBI | TTCGAA | 1 cut(s) | 2500 |
| BstC8I | GCNNGC | 5 cut(s) | 1074, 1097, 1419, 1800, 2121 |
| BstDEI | CTNAG | 6 cut(s) | 1584, 1706, 1767, 2400, 2424, 2562 |
| BstDSI | CCRYGG | 2 cut(s) | 76, 1913 |
| BstFNI | CGCG | 1 cut(s) | 1074 |
| BstHHI | GCGC | 3 cut(s) | 454, 1074, 1076 |
| BstMAI | GTCTC | 3 cut(s) | 330, 636, 1269 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 247, 317, 1418, 1670, 2410, 2419, 2492 |
| BstNI | CCWGG | 3 cut(s) | 588, 1469, 2823 |
| BstNSI | RCATGY | 3 cut(s) | 1398, 1802, 2378 |
| BstSCI | CCNGG | 6 cut(s) | 224, 586, 1198, 1467, 1746, 2821 |
| BstSFI | CTRYAG | 4 cut(s) | 150, 271, 435, 1668 |
| BstSLI | GKGCMC | 3 cut(s) | 624, 1308, 1468 |
| BstUI | CGCG | 1 cut(s) | 1074 |
| BstV1I | GCAGC | 3 cut(s) | 136, 164, 1651 |
| BstV2I | GAAGAC | 2 cut(s) | 1191, 1397 |
| BstX2I | RGATCY | 1 cut(s) | 1607 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 617, 1920 |
| BstYI | RGATCY | 1 cut(s) | 1607 |
| Bsu15I | ATCGAT | 1 cut(s) | 772 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1584, 2424 |
| BsuI | GTATCC | 2 cut(s) | 1149, 1339 |
| BsuRI | GGCC | 5 cut(s) | 295, 673, 1466, 2119, 2317 |
| BsuTUI | ATCGAT | 1 cut(s) | 772 |
| BtgI | CCRYGG | 2 cut(s) | 76, 1913 |
| BtsI | GCAGTG | 1 cut(s) | 1822 |
| BtsIMutI | CAGTG | 6 cut(s) | 662, 978, 1308, 1822, 2063, 2787 |
| BveI | ACCTGC | 1 cut(s) | 532 |
| Cac8I | GCNNGC | 5 cut(s) | 1074, 1097, 1419, 1800, 2121 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2786 |
| CfoI | GCGC | 3 cut(s) | 454, 1074, 1076 |
| Cfr13I | GGNCC | 5 cut(s) | 671, 691, 1464, 1465, 1974 |
| ClaI | ATCGAT | 1 cut(s) | 772 |
| CseI | GACGC | 1 cut(s) | 1624 |
| Csp6I | GTAC | 5 cut(s) | 58, 844, 1026, 1203, 1545 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 397, 432, 1442, 1477 |
| CviQI | GTAC | 5 cut(s) | 58, 844, 1026, 1203, 1545 |
| DdeI | CTNAG | 6 cut(s) | 1584, 1706, 1767, 2400, 2424, 2562 |
| DraI | TTTAAA | 2 cut(s) | 2193, 2302 |
| DraIII | CACNNNGTG | 1 cut(s) | 1750 |
| EaeI | YGGCCR | 1 cut(s) | 293 |
| Eam1104I | CTCTTC | 4 cut(s) | 104, 834, 2166, 2871 |
| EarI | CTCTTC | 4 cut(s) | 104, 834, 2166, 2871 |
| Ecl136II | GAGCTC | 1 cut(s) | 1571 |
| Eco130I | CCWWGG | 5 cut(s) | 76, 372, 682, 1913, 2225 |
| Eco24I | GRGCYC | 3 cut(s) | 1468, 1573, 2497 |
| Eco31I | GGTCTC | 1 cut(s) | 636 |
| Eco47I | GGWCC | 2 cut(s) | 691, 1974 |
| Eco53kI | GAGCTC | 1 cut(s) | 1571 |
| Eco57I | CTGAAG | 1 cut(s) | 1332 |
| Eco81I | CCTNAGG | 2 cut(s) | 1584, 2424 |
| EcoICRI | GAGCTC | 1 cut(s) | 1571 |
| EcoO109I | RGGNCCY | 1 cut(s) | 691 |
| EcoRI | GAATTC | 1 cut(s) | 1175 |
| EcoRII | CCWGG | 3 cut(s) | 586, 1467, 2821 |
| EcoT14I | CCWWGG | 5 cut(s) | 76, 372, 682, 1913, 2225 |
| EcoT22I | ATGCAT | 1 cut(s) | 1800 |
| EcoT38I | GRGCYC | 3 cut(s) | 1468, 1573, 2497 |
| ErhI | CCWWGG | 5 cut(s) | 76, 372, 682, 1913, 2225 |
| FaqI | GGGAC | 5 cut(s) | 182, 704, 1627, 1931, 2734 |
| FbaI | TGATCA | 5 cut(s) | 15, 66, 91, 114, 871 |
| FblI | GTMKAC | 2 cut(s) | 2339, 2620 |
| Fnu4HI | GCNGC | 5 cut(s) | 150, 153, 293, 1665, 2056 |
| FriOI | GRGCYC | 3 cut(s) | 1468, 1573, 2497 |
| Fsp4HI | GCNGC | 5 cut(s) | 150, 153, 293, 1665, 2056 |
| FspBI | CTAG | 6 cut(s) | 989, 1067, 1418, 1536, 1542, 2319 |
| GlaI | GCGC | 3 cut(s) | 453, 1073, 1075 |
| GluI | GCNGC | 5 cut(s) | 150, 153, 293, 1665, 2056 |
| GsuI | CTGGAG | 2 cut(s) | 1251, 2508 |
| HaeIII | GGCC | 5 cut(s) | 295, 673, 1466, 2119, 2317 |
| HapII | CCGG | 4 cut(s) | 225, 791, 1199, 1747 |
| HgaI | GACGC | 1 cut(s) | 1624 |
| HhaI | GCGC | 3 cut(s) | 454, 1074, 1076 |
| Hin6I | GCGC | 3 cut(s) | 452, 1072, 1074 |
| HinP1I | GCGC | 3 cut(s) | 452, 1072, 1074 |
| HincII | GTYRAC | 1 cut(s) | 607 |
| HindII | GTYRAC | 1 cut(s) | 607 |
| HindIII | AAGCTT | 2 cut(s) | 127, 1937 |
| HinfI | GANTC | 9 cut(s) | 338, 377, 491, 918, 1019, 1405, 2069, 2642, 2832 |
| HpaII | CCGG | 4 cut(s) | 225, 791, 1199, 1747 |
| HphI | GGTGA | 6 cut(s) | 333, 670, 1236, 1515, 1832, 1969 |
| Hpy166II | GTNNAC | 7 cut(s) | 234, 607, 722, 1358, 2340, 2621, 2764 |
| Hpy188I | TCNGA | 4 cut(s) | 66, 526, 1168, 1768 |
| Hpy188III | TCNNGA | 8 cut(s) | 35, 44, 112, 1630, 1697, 2720, 2728, 2870 |
| Hpy8I | GTNNAC | 7 cut(s) | 234, 607, 722, 1358, 2340, 2621, 2764 |
| HpyAV | CCTTC | 8 cut(s) | 71, 407, 829, 887, 1542, 1636, 1694, 2507 |
| HpyCH4III | ACNGT | 3 cut(s) | 666, 1106, 1351 |
| HpyCH4IV | ACGT | 1 cut(s) | 638 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 247, 317, 1418, 1670, 2410, 2419, 2492 |
| HpyF3I | CTNAG | 6 cut(s) | 1584, 1706, 1767, 2400, 2424, 2562 |
| HpySE526I | ACGT | 1 cut(s) | 638 |
| HspAI | GCGC | 3 cut(s) | 452, 1072, 1074 |
| KflI | GGGWCCC | 1 cut(s) | 691 |
| Ksp22I | TGATCA | 5 cut(s) | 15, 66, 91, 114, 871 |
| LmnI | GCTCC | 3 cut(s) | 1568, 1584, 2492 |
| Lsp1109I | GCAGC | 3 cut(s) | 136, 164, 1651 |
| LweI | GCATC | 5 cut(s) | 888, 1139, 1566, 2042, 2816 |
| MaeI | CTAG | 6 cut(s) | 989, 1067, 1418, 1536, 1542, 2319 |
| MaeII | ACGT | 1 cut(s) | 638 |
| MaeIII | GTNAC | 3 cut(s) | 1106, 1856, 2459 |
| MfeI | CAATTG | 2 cut(s) | 707, 2624 |
| MflI | RGATCY | 1 cut(s) | 1607 |
| MhlI | GDGCHC | 5 cut(s) | 624, 1308, 1468, 1573, 2497 |
| MlyI | GAGTC | 3 cut(s) | 332, 371, 912 |
| MmeI | TCCRAC | 5 cut(s) | 291, 405, 468, 593, 1166 |
| Mph1103I | ATGCAT | 1 cut(s) | 1800 |
| MslI | CAYNNNNRTG | 2 cut(s) | 615, 1918 |
| MspA1I | CMGCKG | 1 cut(s) | 2404 |
| MspCI | CTTAAG | 1 cut(s) | 1033 |
| MspI | CCGG | 4 cut(s) | 225, 791, 1199, 1747 |
| MspR9I | CCNGG | 6 cut(s) | 226, 588, 1200, 1469, 1748, 2823 |
| MunI | CAATTG | 2 cut(s) | 707, 2624 |
| MvaI | CCWGG | 3 cut(s) | 588, 1469, 2823 |
| MvnI | CGCG | 1 cut(s) | 1074 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 247, 317, 1418, 1670, 2410, 2419, 2492 |
| NciI | CCSGG | 3 cut(s) | 226, 1200, 1748 |
| NcoI | CCATGG | 2 cut(s) | 76, 1913 |
| NheI | GCTAGC | 1 cut(s) | 1417 |
| NlaIV | GGNNCC | 8 cut(s) | 692, 693, 995, 1233, 1466, 1976, 2223, 2494 |
| NmuCI | GTSAC | 2 cut(s) | 1106, 2459 |
| NsiI | ATGCAT | 1 cut(s) | 1800 |
| NspI | RCATGY | 3 cut(s) | 1398, 1802, 2378 |
| NspV | TTCGAA | 1 cut(s) | 2500 |
| PaeI | GCATGC | 1 cut(s) | 1802 |
| PaqCI | CACCTGC | 1 cut(s) | 532 |
| PauI | GCGCGC | 1 cut(s) | 1072 |
| PciI | ACATGT | 1 cut(s) | 1394 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 183 |
| PfeI | GAWTC | 6 cut(s) | 491, 1019, 1405, 2069, 2642, 2832 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 668 |
| PfoI | TCCNGGA | 1 cut(s) | 224 |
| PkrI | GCNGC | 5 cut(s) | 151, 154, 294, 1666, 2057 |
| PleI | GAGTC | 3 cut(s) | 332, 371, 912 |
| PpsI | GAGTC | 3 cut(s) | 332, 371, 912 |
| PpuMI | RGGWCCY | 1 cut(s) | 691 |
| PscI | ACATGT | 1 cut(s) | 1394 |
| Psp124BI | GAGCTC | 1 cut(s) | 1573 |
| Psp5II | RGGWCCY | 1 cut(s) | 691 |
| Psp6I | CCWGG | 3 cut(s) | 586, 1467, 2821 |
| PspGI | CCWGG | 3 cut(s) | 586, 1467, 2821 |
| PspN4I | GGNNCC | 8 cut(s) | 692, 693, 995, 1233, 1466, 1976, 2223, 2494 |
| PspOMI | GGGCCC | 1 cut(s) | 1464 |
| PspPI | GGNCC | 5 cut(s) | 671, 691, 1464, 1465, 1974 |
| PspPPI | RGGWCCY | 1 cut(s) | 691 |
| PstI | CTGCAG | 1 cut(s) | 154 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2786 |
| PsuI | RGATCY | 1 cut(s) | 1607 |
| PteI | GCGCGC | 1 cut(s) | 1072 |
| PvuII | CAGCTG | 1 cut(s) | 2404 |
| RsaI | GTAC | 5 cut(s) | 59, 845, 1027, 1204, 1546 |
| RsaNI | GTAC | 5 cut(s) | 58, 844, 1026, 1203, 1545 |
| RseI | CAYNNNNRTG | 2 cut(s) | 615, 1918 |
| SacI | GAGCTC | 1 cut(s) | 1573 |
| SatI | GCNGC | 5 cut(s) | 150, 153, 293, 1665, 2056 |
| Sau96I | GGNCC | 5 cut(s) | 671, 691, 1464, 1465, 1974 |
| ScaI | AGTACT | 1 cut(s) | 1546 |
| SchI | GAGTC | 3 cut(s) | 332, 371, 912 |
| ScrFI | CCNGG | 6 cut(s) | 226, 588, 1200, 1469, 1748, 2823 |
| SduI | GDGCHC | 5 cut(s) | 624, 1308, 1468, 1573, 2497 |
| SfaNI | GCATC | 5 cut(s) | 888, 1139, 1566, 2042, 2816 |
| SfcI | CTRYAG | 4 cut(s) | 150, 271, 435, 1668 |
| SfuI | TTCGAA | 1 cut(s) | 2500 |
| SinI | GGWCC | 2 cut(s) | 691, 1974 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 615, 1918 |
| SmlI | CTYRAG | 3 cut(s) | 202, 1033, 2728 |
| SmoI | CTYRAG | 3 cut(s) | 202, 1033, 2728 |
| SpeI | ACTAGT | 1 cut(s) | 1066 |
| SphI | GCATGC | 1 cut(s) | 1802 |
| SsiI | CCGC | 5 cut(s) | 292, 420, 747, 2055, 2654 |
| SspI | AATATT | 4 cut(s) | 163, 1062, 2101, 2803 |
| SspMI | CTAG | 6 cut(s) | 989, 1067, 1418, 1536, 1542, 2319 |
| SstI | GAGCTC | 1 cut(s) | 1573 |
| StyD4I | CCNGG | 6 cut(s) | 224, 586, 1198, 1467, 1746, 2821 |
| StyI | CCWWGG | 5 cut(s) | 76, 372, 682, 1913, 2225 |
| TaaI | ACNGT | 3 cut(s) | 666, 1106, 1351 |
| TaiI | ACGT | 1 cut(s) | 641 |
| TaqI | TCGA | 7 cut(s) | 177, 772, 909, 1122, 1191, 1698, 2500 |
| TatI | WGTACW | 2 cut(s) | 1025, 1544 |
| TauI | GCSGC | 2 cut(s) | 295, 2058 |
| TfiI | GAWTC | 6 cut(s) | 491, 1019, 1405, 2069, 2642, 2832 |
| TscAI | CASTG | 6 cut(s) | 669, 985, 1315, 1822, 2070, 2787 |
| TseFI | GTSAC | 2 cut(s) | 1106, 2459 |
| TseI | GCWGC | 3 cut(s) | 149, 152, 1664 |
| Tsp45I | GTSAC | 2 cut(s) | 1106, 2459 |
| TspDTI | ATGAA | 7 cut(s) | 91, 426, 608, 1319, 1418, 2321, 2537 |
| TspRI | CASTG | 6 cut(s) | 669, 985, 1315, 1822, 2070, 2787 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 668 |
| Vha464I | CTTAAG | 1 cut(s) | 1033 |
| VpaK11BI | GGWCC | 2 cut(s) | 691, 1974 |
| XapI | RAATTY | 9 cut(s) | 262, 714, 779, 1175, 1326, 1620, 1757, 1785, 2303 |
| XceI | RCATGY | 3 cut(s) | 1398, 1802, 2378 |
| XmiI | GTMKAC | 2 cut(s) | 2339, 2620 |
| XspI | CTAG | 6 cut(s) | 989, 1067, 1418, 1536, 1542, 2319 |
| ZrmI | AGTACT | 1 cut(s) | 1546 |
| Zsp2I | ATGCAT | 1 cut(s) | 1800 |