RLG00000033933

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005908
Physical Location & Seq
Forward (+)
34351022 .. 34353270
2249 bp
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UTR
Exon/CDS
Intron
RLM00000033933

Sequence Viewer

Length: 1629 bp
ATGGATGATTGTCTTGAAAATGATGATTCCATGTTGACCAGAGAACCAGACATTAAATATGCCGTTGATAACGTTGAAGTTGTTCATGGATGCGTGGATGAAAAAGGCTTTGATAGAAGGGATGATTCCAATGAGGATCTCAACCAGCATGAGCAACAGATTTCTCACTCACTAGATGCAGATTTCAGAGATCAAATTTCAGAATCTCCAGAAAAATCTTATCACATGCCCATTGAATCTGATCATGACAATGCCATAGAAACAAAATCTGACCTTCAAGAGAGGACTCAGTCCACATACAATGATAGTAATCATTACCAAGAAAATAAGAACCAGGGAGCCGGAGATTCTGACTTGGTTAGGTCACCTCATACTGGAAGAGCAAGGAATATCAGCTCAGAGAAGTTACAAGATGATTCAATTATGTCTTCCATTCATGAAATAGAAAAGGAAGCTATTGATATACAAACATGGCAGTCATTATCTTCTCCTAAATCCCACTGGTTAAATAATGAACCTAACGAAGATGACTCCTTGGGTGAGAACAGAATACGAGGAGTACCCCAGTCTGACCTTCAATATCTTGGAAGATCAGCCAGAGGATCAATTTCACCTGTGACTAGGAGACAAATGTCAATTTCACCTGAAGGGTCTCCTTTGCCACTTCACTCTCTCCATGACAGTAAGCATATATCTTCTCAGCAAGGTTCTCCAGACCCATCATATGAACCTCAATCTCATAGACAGAGAATTTCTTCACCTCAAAGGTCTGACATGCATACAGGAGTTTTCCCTGGTCATTTATCTCCTGTGAGGCAAACCTCTGTTTCTACACATGACATTCGGCAAGAGCCCCTGCAAGACAGTTTTGCAGTGAAGCACATATCTGCATCCCTAAAGTCCCATCACTCGCATCCAAAGTATCGGAAAAGGGGCAGATCAGAGTCACGATCACCCACTCAGCATAGAGATTCACCCACTCGGCGTAGAGATTCACCCACTAGGCAGAGAGGTTCGCCGTCTCGGCACAGAGGTTCACCCATTCGACATAGAGGTTCTCCTACTGGTCATAGAGATTCACGAATACGGCATAGAGATTCATCCACTCGGCATAGAGATTCTTATGCCTACCAGAGAGATTATCGTGATAGATTTCGATCAAGGTCCCCATATTCAAAATCCCATCATAGATCAAGGTCCCCTTATTCAAGAGCCCATTATAGATCAAGATCCCCTTATTCACGAGACCATCATAGATCGACAAGGCGAAGGCAATCTCCAAGGCGCAGGTCCCCTTTTACTGAATATCATAATTATCATCGCCGGTCTCCTAGAAGGACACCTTGGTCACCACCTCCTAATAGGAAAACCGGATTAGGGAGACCTGGTAGAAATTTATTTGTTGCAGGTTTCAGCTTCTTAACTGCAGAGAGAGATTTGGAAAGGAAGTTCTCTAGGTATGGCCGAGTACAAGATGTTCGTATTGTTAGAGACAAGAGGTCCGGAGATTCACGTGGATTTGGGTTTTTGACCTTGGAGAGTGATGAAGAGGCTGATGCGGCAATCAGGGCTCTAGATGAGACCGAGTGGAATGGTCGGATTATTCTCGTGGAAAAATCGAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

543

Amino Acids

62.79

Weight (kDa)

9.7

Isoelectric Point (pI)

93.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 466 - 535 2.7e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1345
Acc36I ACCTGC 2 cut(s) 1278, 1397
AccIII TCCGGA 1 cut(s) 1502
AciI CCGC 1 cut(s) 1559
AclI AACGTT 1 cut(s) 72
AclWI GGATC 3 cut(s) 144, 610, 1224
AcoI YGGCCR 1 cut(s) 1462
AcsI RAATTY 3 cut(s) 195, 750, 1393
AcuI CTGAAG 1 cut(s) 666
AcvI CACGTG 1 cut(s) 1514
AfaI GTAC 2 cut(s) 561, 1470
AfiI CCNNNNNNNGG 2 cut(s) 374, 1377
AgsI TTSAA 8 cut(s) 17, 77, 236, 278, 420, 578, 1176, 1209
AhdI GACNNNNNGTC 1 cut(s) 1498
AjnI CCWGG 3 cut(s) 333, 793, 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 1327, 1359
AloI GAACNNNNNNTCC 2 cut(s) 1433, 1465
AluBI AGCT 3 cut(s) 396, 455, 1416
AluI AGCT 3 cut(s) 396, 455, 1416
Alw26I GTCTC 8 cut(s) 619, 657, 1026, 1239, 1332, 1375, 1485, 1574
AlwI GGATC 3 cut(s) 144, 610, 1224
Aor13HI TCCGGA 1 cut(s) 1502
AoxI GGCC 1 cut(s) 1462
ApoI RAATTY 3 cut(s) 195, 750, 1393
Asp700I GAANNNNTTC 2 cut(s) 81, 754
AspLEI GCGC 1 cut(s) 1287
AspS9I GGNCC 4 cut(s) 1164, 1197, 1290, 1500
AvaII GGWCC 4 cut(s) 1164, 1197, 1290, 1500
BanII GRGCYC 3 cut(s) 855, 1216, 1573
BauI CACGAG 2 cut(s) 1242, 1607
BbrPI CACGTG 1 cut(s) 1514
BbsI GAAGAC 1 cut(s) 420
BccI CCATC 4 cut(s) 727, 912, 1191, 1257
BceAI ACGGC 3 cut(s) 47, 1003, 1103
BciT130I CCWGG 3 cut(s) 335, 795, 1386
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 8 cut(s) 619, 657, 1026, 1239, 1332, 1375, 1485, 1574
BfaI CTAG 6 cut(s) 173, 621, 1002, 1332, 1455, 1574
BfmI CTRYAG 1 cut(s) 1425
BfuAI ACCTGC 2 cut(s) 1278, 1397
BglI GCCNNNNNGGC 1 cut(s) 1024
BisI GCNGC 1 cut(s) 1560
BlsI GCNGC 1 cut(s) 1561
Bme1390I CCNGG 3 cut(s) 335, 795, 1386
Bme18I GGWCC 4 cut(s) 1164, 1197, 1290, 1500
BmeRI GACNNNNNGTC 1 cut(s) 1498
BmgT120I GGNCC 4 cut(s) 1164, 1197, 1290, 1500
BmiI GGNNCC 4 cut(s) 340, 1166, 1199, 1292
BmrFI CCNGG 3 cut(s) 335, 795, 1386
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 5 cut(s) 80, 166, 899, 922, 1546
BmuI ACTGGG 1 cut(s) 559
BoxI GACNNNNGTC 1 cut(s) 631
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 2 cut(s) 192, 696
BsaAI YACGTR 1 cut(s) 1514
BsaBI GATNNNNATC 3 cut(s) 309, 1156, 1228
BsaI GGTCTC 5 cut(s) 657, 1239, 1332, 1375, 1574
BsaJI CCNNGG 6 cut(s) 334, 534, 793, 1280, 1343, 1533
BsaWI WCCGGW 2 cut(s) 1370, 1502
BsaXI ACNNNNNCTCC 2 cut(s) 1372, 1402
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 1377
Bse118I RCCGGY 1 cut(s) 1323
Bse1I ACTGG 4 cut(s) 379, 506, 565, 1069
Bse8I GATNNNNATC 3 cut(s) 309, 1156, 1228
BseAI TCCGGA 1 cut(s) 1502
BseBI CCWGG 3 cut(s) 335, 795, 1386
BseDI CCNNGG 6 cut(s) 334, 534, 793, 1280, 1343, 1533
BseGI GGATG 7 cut(s) 10, 95, 103, 127, 890, 913, 1100
BseJI GATNNNNATC 3 cut(s) 309, 1156, 1228
BseLI CCNNNNNNNGG 2 cut(s) 374, 1377
BseMII CTCAG 4 cut(s) 302, 411, 713, 974
BseNI ACTGG 4 cut(s) 379, 506, 565, 1069
BseRI GAGGAG 1 cut(s) 570
BshFI GGCC 1 cut(s) 1464
BsiSI CCGG 4 cut(s) 342, 1324, 1371, 1503
BslFI GGGAC 4 cut(s) 886, 1150, 1183, 1276
BslI CCNNNNNNNGG 2 cut(s) 374, 1377
BsmAI GTCTC 8 cut(s) 619, 657, 1026, 1239, 1332, 1375, 1485, 1574
BsmBI CGTCTC 1 cut(s) 1026
BsmFI GGGAC 4 cut(s) 886, 1150, 1183, 1276
BsnI GGCC 1 cut(s) 1464
Bso31I GGTCTC 5 cut(s) 657, 1239, 1332, 1375, 1574
Bsp1286I GDGCHC 3 cut(s) 855, 1216, 1573
Bsp13I TCCGGA 1 cut(s) 1502
BspACI CCGC 1 cut(s) 1559
BspANI GGCC 1 cut(s) 1464
BspCNI CTCAG 4 cut(s) 301, 410, 712, 973
BspEI TCCGGA 1 cut(s) 1502
BspHI TCATGA 2 cut(s) 244, 436
BspLI GGNNCC 4 cut(s) 340, 1166, 1199, 1292
BspMAI CTGCAG 1 cut(s) 1429
BspMI ACCTGC 2 cut(s) 1278, 1397
BspPI GGATC 3 cut(s) 144, 610, 1224
BspQI GCTCTTC 1 cut(s) 373
BspTNI GGTCTC 5 cut(s) 657, 1239, 1332, 1375, 1574
BsrFI RCCGGY 1 cut(s) 1323
BsrI ACTGG 4 cut(s) 379, 506, 565, 1069
BssAI RCCGGY 1 cut(s) 1323
BssECI CCNNGG 6 cut(s) 334, 534, 793, 1280, 1343, 1533
BssSI CACGAG 2 cut(s) 1242, 1607
BssT1I CCWWGG 4 cut(s) 534, 1280, 1343, 1533
Bst2BI CACGAG 2 cut(s) 1242, 1607
Bst2UI CCWGG 3 cut(s) 335, 795, 1386
Bst4CI ACNGT 2 cut(s) 683, 866
Bst6I CTCTTC 2 cut(s) 373, 1542
BstBAI YACGTR 1 cut(s) 1514
BstDEI CTNAG 4 cut(s) 288, 397, 699, 960
BstEII GGTNACC 2 cut(s) 363, 1347
BstF5I GGATG 7 cut(s) 10, 95, 103, 127, 890, 913, 1100
BstHHI GCGC 1 cut(s) 1287
BstMAI GTCTC 8 cut(s) 619, 657, 1026, 1239, 1332, 1375, 1485, 1574
BstMWI GCNNNNNNNGC 3 cut(s) 1024, 1559, 1568
BstNI CCWGG 3 cut(s) 335, 795, 1386
BstNSI RCATGY 2 cut(s) 229, 778
BstPAI GACNNNNGTC 1 cut(s) 631
BstPI GGTNACC 2 cut(s) 363, 1347
BstSCI CCNGG 3 cut(s) 333, 793, 1384
BstSFI CTRYAG 1 cut(s) 1425
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 2 cut(s) 136, 1229
BstYI RGATCY 2 cut(s) 136, 1229
BsuRI GGCC 1 cut(s) 1464
BtgZI GCGATG 1 cut(s) 1304
BtsCI GGATG 7 cut(s) 10, 95, 103, 127, 890, 913, 1100
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 2 cut(s) 499, 879
BveI ACCTGC 2 cut(s) 1278, 1397
CciI TCATGA 2 cut(s) 244, 436
CfoI GCGC 1 cut(s) 1287
Cfr10I RCCGGY 1 cut(s) 1323
Cfr13I GGNCC 4 cut(s) 1164, 1197, 1290, 1500
CsiI ACCWGGT 1 cut(s) 1384
Csp6I GTAC 2 cut(s) 560, 1469
CviQI GTAC 2 cut(s) 560, 1469
DdeI CTNAG 4 cut(s) 288, 397, 699, 960
DrdI GACNNNNNNGTC 1 cut(s) 1345
DriI GACNNNNNGTC 1 cut(s) 1498
DseDI GACNNNNNNGTC 1 cut(s) 1345
EaeI YGGCCR 1 cut(s) 1462
Eam1104I CTCTTC 2 cut(s) 373, 1542
Eam1105I GACNNNNNGTC 1 cut(s) 1498
EarI CTCTTC 2 cut(s) 373, 1542
Eco130I CCWWGG 4 cut(s) 534, 1280, 1343, 1533
Eco24I GRGCYC 3 cut(s) 855, 1216, 1573
Eco31I GGTCTC 5 cut(s) 657, 1239, 1332, 1375, 1574
Eco47I GGWCC 4 cut(s) 1164, 1197, 1290, 1500
Eco57I CTGAAG 1 cut(s) 666
Eco72I CACGTG 1 cut(s) 1514
Eco91I GGTNACC 2 cut(s) 363, 1347
EcoO109I RGGNCCY 3 cut(s) 1164, 1197, 1290
EcoO65I GGTNACC 2 cut(s) 363, 1347
EcoRII CCWGG 3 cut(s) 333, 793, 1384
EcoT14I CCWWGG 4 cut(s) 534, 1280, 1343, 1533
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 3 cut(s) 855, 1216, 1573
ErhI CCWWGG 4 cut(s) 534, 1280, 1343, 1533
Esp3I CGTCTC 1 cut(s) 1026
FalI AAGNNNNNCTT 6 cut(s) 1186, 1218, 1219, 1251, 1327, 1359
FaqI GGGAC 4 cut(s) 886, 1150, 1183, 1276
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 1560
FokI GGATG 7 cut(s) 17, 102, 110, 134, 877, 900, 1087
FriOI GRGCYC 3 cut(s) 855, 1216, 1573
Fsp4HI GCNGC 1 cut(s) 1560
FspBI CTAG 6 cut(s) 173, 621, 1002, 1332, 1455, 1574
GlaI GCGC 1 cut(s) 1286
GluI GCNGC 1 cut(s) 1560
GsuI CTGGAG 2 cut(s) 192, 696
HaeIII GGCC 1 cut(s) 1464
HapII CCGG 4 cut(s) 342, 1324, 1371, 1503
HhaI GCGC 1 cut(s) 1287
Hin6I GCGC 1 cut(s) 1285
HinP1I GCGC 1 cut(s) 1285
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HpaII CCGG 4 cut(s) 342, 1324, 1371, 1503
Hpy166II GTNNAC 3 cut(s) 36, 294, 1037
Hpy8I GTNNAC 3 cut(s) 36, 294, 1037
HpyAV CCTTC 6 cut(s) 111, 284, 584, 641, 1263, 1329
HpyCH4III ACNGT 2 cut(s) 683, 866
HpyCH4IV ACGT 2 cut(s) 72, 1513
HpyCH4V TGCA 7 cut(s) 179, 778, 859, 872, 890, 1406, 1427
HpyF10VI GCNNNNNNNGC 3 cut(s) 1024, 1559, 1568
HpyF3I CTNAG 4 cut(s) 288, 397, 699, 960
HpySE526I ACGT 2 cut(s) 72, 1513
HspAI GCGC 1 cut(s) 1285
Kpn2I TCCGGA 1 cut(s) 1502
Ksp22I TGATCA 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 338
LweI GCATC 5 cut(s) 80, 166, 899, 922, 1546
MabI ACCWGGT 1 cut(s) 1384
MaeI CTAG 6 cut(s) 173, 621, 1002, 1332, 1455, 1574
MaeII ACGT 2 cut(s) 72, 1513
MaeIII GTNAC 5 cut(s) 363, 405, 616, 945, 1347
MboII GAAGA 8 cut(s) 390, 420, 477, 536, 600, 687, 747, 1559
MflI RGATCY 2 cut(s) 136, 1229
MhlI GDGCHC 3 cut(s) 855, 1216, 1573
MluCI AATT 7 cut(s) 195, 420, 606, 636, 750, 1312, 1393
MlyI GAGTC 3 cut(s) 280, 524, 953
MmeI TCCRAC 1 cut(s) 1577
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 1 cut(s) 1502
MroXI GAANNNNTTC 2 cut(s) 81, 754
MseI TTAA 3 cut(s) 54, 506, 1421
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 4 cut(s) 342, 1324, 1371, 1503
MspR9I CCNGG 3 cut(s) 335, 795, 1386
MvaI CCWGG 3 cut(s) 335, 795, 1386
MwoI GCNNNNNNNGC 3 cut(s) 1024, 1559, 1568
NdeI CATATG 1 cut(s) 724
NlaIV GGNNCC 4 cut(s) 340, 1166, 1199, 1292
NmeAIII GCCGAG 4 cut(s) 961, 1003, 1087, 1490
NmuCI GTSAC 4 cut(s) 363, 616, 945, 1347
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 2 cut(s) 229, 778
PagI TCATGA 2 cut(s) 244, 436
PciSI GCTCTTC 1 cut(s) 373
PdmI GAANNNNTTC 2 cut(s) 81, 754
PflFI GACNNNGTC 1 cut(s) 289
PkrI GCNGC 1 cut(s) 1561
PleI GAGTC 3 cut(s) 280, 524, 952
PmaCI CACGTG 1 cut(s) 1514
PmlI CACGTG 1 cut(s) 1514
PpsI GAGTC 3 cut(s) 280, 524, 952
Ppu21I YACGTR 1 cut(s) 1514
PpuMI RGGWCCY 3 cut(s) 1164, 1197, 1290
PshAI GACNNNNGTC 1 cut(s) 631
Psp1406I AACGTT 1 cut(s) 72
Psp5II RGGWCCY 3 cut(s) 1164, 1197, 1290
Psp6I CCWGG 3 cut(s) 333, 793, 1384
PspCI CACGTG 1 cut(s) 1514
PspEI GGTNACC 2 cut(s) 363, 1347
PspGI CCWGG 3 cut(s) 333, 793, 1384
PspN4I GGNNCC 4 cut(s) 340, 1166, 1199, 1292
PspPI GGNCC 4 cut(s) 1164, 1197, 1290, 1500
PspPPI RGGWCCY 3 cut(s) 1164, 1197, 1290
PsrI GAACNNNNNNTAC 2 cut(s) 1461, 1493
PstI CTGCAG 1 cut(s) 1429
PsuI RGATCY 2 cut(s) 136, 1229
PsyI GACNNNGTC 1 cut(s) 289
RsaI GTAC 2 cut(s) 561, 1470
RsaNI GTAC 2 cut(s) 560, 1469
RseI CAYNNNNRTG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 373
SaqAI TTAA 3 cut(s) 54, 506, 1421
SatI GCNGC 1 cut(s) 1560
Sau96I GGNCC 4 cut(s) 1164, 1197, 1290, 1500
SchI GAGTC 3 cut(s) 280, 524, 953
ScrFI CCNGG 3 cut(s) 335, 795, 1386
SduI GDGCHC 3 cut(s) 855, 1216, 1573
SexAI ACCWGGT 1 cut(s) 1384
SfaNI GCATC 5 cut(s) 80, 166, 899, 922, 1546
SfcI CTRYAG 1 cut(s) 1425
SinI GGWCC 4 cut(s) 1164, 1197, 1290, 1500
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 7 cut(s) 195, 420, 606, 636, 750, 1312, 1393
SsiI CCGC 1 cut(s) 1559
SspMI CTAG 6 cut(s) 173, 621, 1002, 1332, 1455, 1574
StyD4I CCNGG 3 cut(s) 333, 793, 1384
StyI CCWWGG 4 cut(s) 534, 1280, 1343, 1533
TaaI ACNGT 2 cut(s) 683, 866
TaiI ACGT 2 cut(s) 75, 1516
TaqI TCGA 4 cut(s) 1045, 1156, 1259, 1619
TaqII GACCGA 1 cut(s) 1598
TasI AATT 7 cut(s) 195, 420, 606, 636, 750, 1312, 1393
TatI WGTACW 1 cut(s) 1468
TauI GCSGC 1 cut(s) 1562
Tru1I TTAA 3 cut(s) 54, 506, 1421
Tru9I TTAA 3 cut(s) 54, 506, 1421
TscAI CASTG 2 cut(s) 506, 879
TseFI GTSAC 4 cut(s) 363, 616, 945, 1347
Tsp45I GTSAC 4 cut(s) 363, 616, 945, 1347
TspDTI ATGAA 8 cut(s) 74, 114, 425, 453, 528, 741, 1089, 1560
TspRI CASTG 2 cut(s) 506, 879
Tth111I GACNNNGTC 1 cut(s) 289
VpaK11BI GGWCC 4 cut(s) 1164, 1197, 1290, 1500
XapI RAATTY 3 cut(s) 195, 750, 1393
XbaI TCTAGA 1 cut(s) 1573
XceI RCATGY 2 cut(s) 229, 778
XmnI GAANNNNTTC 2 cut(s) 81, 754
XspI CTAG 6 cut(s) 173, 621, 1002, 1332, 1455, 1574
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.