RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 |
| malus_domestica | MD03G1200600.v1.1 |
| prunus_persica | Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0039641 |
| rosa_laevigata | RLG00000033933 |
| rosa_multiflora | Rmu_ssc0000400.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00041570 |
| rosa_rugosa | Rorug05G0180400 Rorug05G0180500 Rorug05G0180600 Rorug05G0180700 Rorug05G0180800 |
| rosa_samantha | Rh5AG267600 Rh5BG271900 Rh5CG304500 Rh5DG279600 |
| rosa_wichuraiana | Rw5G025010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1334 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 466 |
| AccIII | TCCGGA | 1 cut(s) | 208 |
| AciI | CCGC | 2 cut(s) | 914, 1292 |
| AclWI | GGATC | 3 cut(s) | 127, 135, 751 |
| AcoI | YGGCCR | 1 cut(s) | 1399 |
| AcsI | RAATTY | 3 cut(s) | 192, 266, 1330 |
| AcuI | CTGAAG | 3 cut(s) | 432, 807, 986 |
| AcvI | CACGTG | 1 cut(s) | 1451 |
| AfaI | GTAC | 2 cut(s) | 507, 1407 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 466, 515, 701, 923, 948, 949, 1476 |
| AgsI | TTSAA | 9 cut(s) | 21, 104, 121, 184, 260, 304, 401, 719, 1182 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1435 |
| AjnI | CCWGG | 4 cut(s) | 459, 676, 694, 1321 |
| AluBI | AGCT | 4 cut(s) | 99, 596, 1187, 1508 |
| AluI | AGCT | 4 cut(s) | 99, 596, 1187, 1508 |
| Alw21I | GWGCWC | 2 cut(s) | 1189, 1510 |
| Alw26I | GTCTC | 4 cut(s) | 300, 441, 1422, 1511 |
| AlwI | GGATC | 3 cut(s) | 127, 135, 751 |
| Aor13HI | TCCGGA | 1 cut(s) | 208 |
| AoxI | GGCC | 2 cut(s) | 494, 1399 |
| ApeKI | GCWGC | 1 cut(s) | 1496 |
| ApoI | RAATTY | 3 cut(s) | 192, 266, 1330 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 32, 64, 1021, 1053 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 204, 1213 |
| AspA2I | CCTAGG | 1 cut(s) | 632 |
| AspS9I | GGNCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| AsuHPI | GGTGA | 8 cut(s) | 338, 888, 993, 1014, 1035, 1098, 1250, 1278 |
| AvaII | GGWCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| AvrII | CCTAGG | 1 cut(s) | 632 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 489, 522 |
| BanII | GRGCYC | 2 cut(s) | 1189, 1510 |
| BbrPI | CACGTG | 1 cut(s) | 1451 |
| BbsI | GAAGAC | 3 cut(s) | 561, 795, 1216 |
| Bbv12I | GWGCWC | 2 cut(s) | 1189, 1510 |
| BbvI | GCAGC | 1 cut(s) | 1508 |
| BccI | CCATC | 3 cut(s) | 325, 805, 1065 |
| BciT130I | CCWGG | 4 cut(s) | 461, 678, 696, 1323 |
| BclI | TGATCA | 2 cut(s) | 241, 601 |
| BcoDI | GTCTC | 4 cut(s) | 300, 441, 1422, 1511 |
| BfaI | CTAG | 7 cut(s) | 30, 597, 633, 756, 1269, 1392, 1511 |
| BfmI | CTRYAG | 1 cut(s) | 1362 |
| BfuAI | ACCTGC | 1 cut(s) | 1334 |
| BglII | AGATCT | 2 cut(s) | 1157, 1372 |
| BisI | GCNGC | 1 cut(s) | 1497 |
| BlnI | CCTAGG | 1 cut(s) | 632 |
| BlsI | GCNGC | 1 cut(s) | 1498 |
| Bme1390I | CCNGG | 4 cut(s) | 461, 678, 696, 1323 |
| Bme18I | GGWCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1435 |
| BmgT120I | GGNCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| BmiI | GGNNCC | 4 cut(s) | 1034, 1055, 1172, 1232 |
| BmrFI | CCNGG | 4 cut(s) | 461, 678, 696, 1323 |
| BmsI | GCATC | 4 cut(s) | 708, 989, 1477, 1483 |
| BoxI | GACNNNNGTC | 1 cut(s) | 772 |
| BpiI | GAAGAC | 3 cut(s) | 561, 795, 1216 |
| BpmI | CTGGAG | 1 cut(s) | 1461 |
| BpuEI | CTTGAG | 1 cut(s) | 834 |
| BsaAI | YACGTR | 1 cut(s) | 1451 |
| BsaBI | GATNNNNATC | 3 cut(s) | 748, 906, 1162 |
| BsaJI | CCNNGG | 9 cut(s) | 322, 460, 632, 694, 986, 1007, 1049, 1280, 1470 |
| BsaWI | WCCGGW | 1 cut(s) | 208 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 280, 310 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 466, 515, 701, 923, 948, 949, 1476 |
| Bse1I | ACTGG | 1 cut(s) | 1312 |
| Bse8I | GATNNNNATC | 3 cut(s) | 748, 906, 1162 |
| BseAI | TCCGGA | 1 cut(s) | 208 |
| BseBI | CCWGG | 4 cut(s) | 461, 678, 696, 1323 |
| BseDI | CCNNGG | 9 cut(s) | 322, 460, 632, 694, 986, 1007, 1049, 1280, 1470 |
| BseGI | GGATG | 4 cut(s) | 19, 340, 481, 1486 |
| BseJI | GATNNNNATC | 3 cut(s) | 748, 906, 1162 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 466, 515, 701, 923, 948, 949, 1476 |
| BseMII | CTCAG | 2 cut(s) | 282, 1512 |
| BseNI | ACTGG | 1 cut(s) | 1312 |
| BseRI | GAGGAG | 2 cut(s) | 358, 429 |
| BseXI | GCAGC | 1 cut(s) | 1508 |
| BshFI | GGCC | 2 cut(s) | 496, 1401 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1189, 1510 |
| BsiSI | CCGG | 1 cut(s) | 209 |
| BslFI | GGGAC | 7 cut(s) | 138, 212, 1018, 1039, 1100, 1156, 1216 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 466, 515, 701, 923, 948, 949, 1476 |
| BsmAI | GTCTC | 4 cut(s) | 300, 441, 1422, 1511 |
| BsmFI | GGGAC | 7 cut(s) | 138, 212, 1018, 1039, 1100, 1156, 1216 |
| BsmI | GAATGC | 1 cut(s) | 927 |
| BsnI | GGCC | 2 cut(s) | 496, 1401 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1189, 1510 |
| Bsp13I | TCCGGA | 1 cut(s) | 208 |
| Bsp19I | CCATGG | 1 cut(s) | 1280 |
| BspACI | CCGC | 2 cut(s) | 914, 1292 |
| BspANI | GGCC | 2 cut(s) | 496, 1401 |
| BspCNI | CTCAG | 2 cut(s) | 283, 1513 |
| BspEI | TCCGGA | 1 cut(s) | 208 |
| BspHI | TCATGA | 1 cut(s) | 577 |
| BspLI | GGNNCC | 4 cut(s) | 1034, 1055, 1172, 1232 |
| BspMI | ACCTGC | 1 cut(s) | 1334 |
| BspPI | GGATC | 3 cut(s) | 127, 135, 751 |
| BspQI | GCTCTTC | 1 cut(s) | 514 |
| BsrI | ACTGG | 1 cut(s) | 1312 |
| BssECI | CCNNGG | 9 cut(s) | 322, 460, 632, 694, 986, 1007, 1049, 1280, 1470 |
| BssT1I | CCWWGG | 7 cut(s) | 322, 632, 986, 1007, 1049, 1280, 1470 |
| Bst2UI | CCWGG | 4 cut(s) | 461, 678, 696, 1323 |
| Bst4CI | ACNGT | 2 cut(s) | 251, 821 |
| Bst6I | CTCTTC | 2 cut(s) | 210, 514 |
| BstBAI | YACGTR | 1 cut(s) | 1451 |
| BstC8I | GCNNGC | 1 cut(s) | 996 |
| BstDEI | CTNAG | 3 cut(s) | 291, 378, 1521 |
| BstDSI | CCRYGG | 1 cut(s) | 1280 |
| BstEII | GGTNACC | 1 cut(s) | 1284 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1474 |
| BstF5I | GGATG | 4 cut(s) | 19, 340, 481, 1486 |
| BstMAI | GTCTC | 4 cut(s) | 300, 441, 1422, 1511 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 521, 1496, 1505 |
| BstNI | CCWGG | 4 cut(s) | 461, 678, 696, 1323 |
| BstNSI | RCATGY | 1 cut(s) | 998 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 772 |
| BstPI | GGTNACC | 1 cut(s) | 1284 |
| BstSCI | CCNGG | 4 cut(s) | 459, 676, 694, 1321 |
| BstSFI | CTRYAG | 1 cut(s) | 1362 |
| BstV1I | GCAGC | 1 cut(s) | 1508 |
| BstV2I | GAAGAC | 3 cut(s) | 561, 795, 1216 |
| BstX2I | RGATCY | 3 cut(s) | 127, 1157, 1372 |
| BstYI | RGATCY | 3 cut(s) | 127, 1157, 1372 |
| BsuRI | GGCC | 2 cut(s) | 496, 1401 |
| BtgI | CCRYGG | 1 cut(s) | 1280 |
| BtsCI | GGATG | 4 cut(s) | 19, 340, 481, 1486 |
| BtsIMutI | CAGTG | 1 cut(s) | 256 |
| BveI | ACCTGC | 1 cut(s) | 1334 |
| Cac8I | GCNNGC | 1 cut(s) | 996 |
| CciI | TCATGA | 1 cut(s) | 577 |
| Cfr13I | GGNCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| Csp6I | GTAC | 2 cut(s) | 506, 1406 |
| CviQI | GTAC | 2 cut(s) | 506, 1406 |
| DdeI | CTNAG | 3 cut(s) | 291, 378, 1521 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1435 |
| EaeI | YGGCCR | 1 cut(s) | 1399 |
| Eam1104I | CTCTTC | 2 cut(s) | 210, 514 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1435 |
| EarI | CTCTTC | 2 cut(s) | 210, 514 |
| Ecl136II | GAGCTC | 2 cut(s) | 1187, 1508 |
| Eco130I | CCWWGG | 7 cut(s) | 322, 632, 986, 1007, 1049, 1280, 1470 |
| Eco147I | AGGCCT | 1 cut(s) | 496 |
| Eco24I | GRGCYC | 2 cut(s) | 1189, 1510 |
| Eco47I | GGWCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| Eco53kI | GAGCTC | 2 cut(s) | 1187, 1508 |
| Eco57I | CTGAAG | 3 cut(s) | 432, 807, 986 |
| Eco72I | CACGTG | 1 cut(s) | 1451 |
| Eco91I | GGTNACC | 1 cut(s) | 1284 |
| EcoICRI | GAGCTC | 2 cut(s) | 1187, 1508 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1474 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1032, 1053, 1170, 1230 |
| EcoO65I | GGTNACC | 1 cut(s) | 1284 |
| EcoRII | CCWGG | 4 cut(s) | 459, 676, 694, 1321 |
| EcoT14I | CCWWGG | 7 cut(s) | 322, 632, 986, 1007, 1049, 1280, 1470 |
| EcoT38I | GRGCYC | 2 cut(s) | 1189, 1510 |
| ErhI | CCWWGG | 7 cut(s) | 322, 632, 986, 1007, 1049, 1280, 1470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1219, 1251 |
| FaqI | GGGAC | 7 cut(s) | 138, 212, 1018, 1039, 1100, 1156, 1216 |
| FauI | CCCGC | 1 cut(s) | 921 |
| FbaI | TGATCA | 2 cut(s) | 241, 601 |
| Fnu4HI | GCNGC | 1 cut(s) | 1497 |
| FokI | GGATG | 4 cut(s) | 26, 347, 488, 1493 |
| FriOI | GRGCYC | 2 cut(s) | 1189, 1510 |
| Fsp4HI | GCNGC | 1 cut(s) | 1497 |
| FspBI | CTAG | 7 cut(s) | 30, 597, 633, 756, 1269, 1392, 1511 |
| GluI | GCNGC | 1 cut(s) | 1497 |
| GsuI | CTGGAG | 1 cut(s) | 1461 |
| HaeIII | GGCC | 2 cut(s) | 496, 1401 |
| HapII | CCGG | 1 cut(s) | 209 |
| HpaII | CCGG | 1 cut(s) | 209 |
| HphI | GGTGA | 8 cut(s) | 338, 888, 993, 1014, 1035, 1098, 1250, 1278 |
| Hpy99I | CGWCG | 1 cut(s) | 1041 |
| HpyAV | CCTTC | 5 cut(s) | 843, 1023, 1077, 1245, 1266 |
| HpyCH4III | ACNGT | 2 cut(s) | 251, 821 |
| HpyCH4IV | ACGT | 3 cut(s) | 63, 451, 1450 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 521, 1496, 1505 |
| HpyF3I | CTNAG | 3 cut(s) | 291, 378, 1521 |
| HpySE526I | ACGT | 3 cut(s) | 63, 451, 1450 |
| Kpn2I | TCCGGA | 1 cut(s) | 208 |
| Ksp22I | TGATCA | 2 cut(s) | 241, 601 |
| LguI | GCTCTTC | 1 cut(s) | 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 1508 |
| LweI | GCATC | 4 cut(s) | 708, 989, 1477, 1483 |
| MaeI | CTAG | 7 cut(s) | 30, 597, 633, 756, 1269, 1392, 1511 |
| MaeII | ACGT | 3 cut(s) | 63, 451, 1450 |
| MaeIII | GTNAC | 5 cut(s) | 546, 774, 1098, 1256, 1284 |
| MfeI | CAATTG | 1 cut(s) | 617 |
| MflI | RGATCY | 3 cut(s) | 127, 1157, 1372 |
| MhlI | GDGCHC | 2 cut(s) | 1189, 1510 |
| MluCI | AATT | 8 cut(s) | 192, 266, 352, 617, 706, 935, 1072, 1330 |
| MlyI | GAGTC | 6 cut(s) | 160, 302, 443, 680, 785, 1106 |
| MmeI | TCCRAC | 2 cut(s) | 160, 1514 |
| MroI | TCCGGA | 1 cut(s) | 208 |
| MroXI | GAANNNNTTC | 2 cut(s) | 204, 1213 |
| MseI | TTAA | 3 cut(s) | 45, 360, 564 |
| MslI | CAYNNNNRTG | 1 cut(s) | 171 |
| MspI | CCGG | 1 cut(s) | 209 |
| MspR9I | CCNGG | 4 cut(s) | 461, 678, 696, 1323 |
| MunI | CAATTG | 1 cut(s) | 617 |
| Mva1269I | GAATGC | 1 cut(s) | 927 |
| MvaI | CCWGG | 4 cut(s) | 461, 678, 696, 1323 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 521, 1496, 1505 |
| NcoI | CCATGG | 1 cut(s) | 1280 |
| NlaIV | GGNNCC | 4 cut(s) | 1034, 1055, 1172, 1232 |
| NmeAIII | GCCGAG | 1 cut(s) | 1427 |
| NmuCI | GTSAC | 5 cut(s) | 546, 774, 1098, 1256, 1284 |
| NspI | RCATGY | 1 cut(s) | 998 |
| PaeI | GCATGC | 1 cut(s) | 998 |
| PagI | TCATGA | 1 cut(s) | 577 |
| PceI | AGGCCT | 1 cut(s) | 496 |
| PciSI | GCTCTTC | 1 cut(s) | 514 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1033, 1414 |
| PctI | GAATGC | 1 cut(s) | 927 |
| PdmI | GAANNNNTTC | 2 cut(s) | 204, 1213 |
| PflFI | GACNNNGTC | 1 cut(s) | 292 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 466 |
| PkrI | GCNGC | 1 cut(s) | 1498 |
| PleI | GAGTC | 6 cut(s) | 159, 301, 442, 679, 785, 1105 |
| PmaCI | CACGTG | 1 cut(s) | 1451 |
| PmlI | CACGTG | 1 cut(s) | 1451 |
| PpsI | GAGTC | 6 cut(s) | 159, 301, 442, 679, 785, 1105 |
| Ppu21I | YACGTR | 1 cut(s) | 1451 |
| PpuMI | RGGWCCY | 4 cut(s) | 1032, 1053, 1170, 1230 |
| PshAI | GACNNNNGTC | 1 cut(s) | 772 |
| Psp124BI | GAGCTC | 2 cut(s) | 1189, 1510 |
| Psp5II | RGGWCCY | 4 cut(s) | 1032, 1053, 1170, 1230 |
| Psp6I | CCWGG | 4 cut(s) | 459, 676, 694, 1321 |
| PspCI | CACGTG | 1 cut(s) | 1451 |
| PspEI | GGTNACC | 1 cut(s) | 1284 |
| PspGI | CCWGG | 4 cut(s) | 459, 676, 694, 1321 |
| PspN4I | GGNNCC | 4 cut(s) | 1034, 1055, 1172, 1232 |
| PspPI | GGNCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| PspPPI | RGGWCCY | 4 cut(s) | 1032, 1053, 1170, 1230 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1398, 1430 |
| PsuI | RGATCY | 3 cut(s) | 127, 1157, 1372 |
| PsyI | GACNNNGTC | 1 cut(s) | 292 |
| RsaI | GTAC | 2 cut(s) | 507, 1407 |
| RsaNI | GTAC | 2 cut(s) | 506, 1406 |
| RseI | CAYNNNNRTG | 1 cut(s) | 171 |
| SacI | GAGCTC | 2 cut(s) | 1189, 1510 |
| SapI | GCTCTTC | 1 cut(s) | 514 |
| SaqAI | TTAA | 3 cut(s) | 45, 360, 564 |
| SatI | GCNGC | 1 cut(s) | 1497 |
| Sau96I | GGNCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| SchI | GAGTC | 6 cut(s) | 160, 302, 443, 680, 785, 1106 |
| ScrFI | CCNGG | 4 cut(s) | 461, 678, 696, 1323 |
| SduI | GDGCHC | 2 cut(s) | 1189, 1510 |
| SfaNI | GCATC | 4 cut(s) | 708, 989, 1477, 1483 |
| SfcI | CTRYAG | 1 cut(s) | 1362 |
| SinI | GGWCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 171 |
| SmlI | CTYRAG | 1 cut(s) | 849 |
| SmoI | CTYRAG | 1 cut(s) | 849 |
| SphI | GCATGC | 1 cut(s) | 998 |
| Sse9I | AATT | 8 cut(s) | 192, 266, 352, 617, 706, 935, 1072, 1330 |
| SseBI | AGGCCT | 1 cut(s) | 496 |
| SsiI | CCGC | 2 cut(s) | 914, 1292 |
| SspMI | CTAG | 7 cut(s) | 30, 597, 633, 756, 1269, 1392, 1511 |
| SstI | GAGCTC | 2 cut(s) | 1189, 1510 |
| StuI | AGGCCT | 1 cut(s) | 496 |
| StyD4I | CCNGG | 4 cut(s) | 459, 676, 694, 1321 |
| StyI | CCWWGG | 7 cut(s) | 322, 632, 986, 1007, 1049, 1280, 1470 |
| TaaI | ACNGT | 2 cut(s) | 251, 821 |
| TaiI | ACGT | 3 cut(s) | 66, 454, 1453 |
| TaqI | TCGA | 4 cut(s) | 931, 1027, 1162, 1199 |
| TasI | AATT | 8 cut(s) | 192, 266, 352, 617, 706, 935, 1072, 1330 |
| Tru1I | TTAA | 3 cut(s) | 45, 360, 564 |
| Tru9I | TTAA | 3 cut(s) | 45, 360, 564 |
| TscAI | CASTG | 1 cut(s) | 256 |
| TseFI | GTSAC | 5 cut(s) | 546, 774, 1098, 1256, 1284 |
| TseI | GCWGC | 1 cut(s) | 1496 |
| Tsp45I | GTSAC | 5 cut(s) | 546, 774, 1098, 1256, 1284 |
| TspDTI | ATGAA | 7 cut(s) | 105, 204, 566, 570, 594, 669, 1497 |
| TspRI | CASTG | 1 cut(s) | 256 |
| Tth111I | GACNNNGTC | 1 cut(s) | 292 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 466 |
| VpaK11BI | GGWCC | 4 cut(s) | 1032, 1053, 1170, 1230 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1474 |
| XapI | RAATTY | 3 cut(s) | 192, 266, 1330 |
| XbaI | TCTAGA | 1 cut(s) | 1510 |
| XceI | RCATGY | 1 cut(s) | 998 |
| XmaJI | CCTAGG | 1 cut(s) | 632 |
| XmnI | GAANNNNTTC | 2 cut(s) | 204, 1213 |
| XspI | CTAG | 7 cut(s) | 30, 597, 633, 756, 1269, 1392, 1511 |