Prupe.4G213700_v2.0.a1

RNA recognition motif

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
13345507 .. 13350097
4591 bp
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UTR
Exon/CDS
Intron
Prupe.4G213700.5

Sequence Viewer

Length: 1566 bp
ATGGAAAACATGGATGATTCAACATTGGCTAGAGAATCAGACCTTAACTTTGCAGTTGATAACGTAGAAAAGGCTTATTGTTATGCTGATGAAAAGAGCTTTGAAAAAAGGGATTGTTTCAATGAGGATCTGATCCAACATGAGCAACAGAGTCCCCCCTCAATCCATGCAGATGTAGATTTCAAATATGAAATTTCAGAATCTCTTCCGGAAAAATCTTGCCCTGTCCCAACTGAATCTGATCAAGACAGTGCCATTGAAACAAAATTTGCCCATGAGCGAGAGAGGACTGAGTCTCCATTCAAGGACAATAACCATTACCAAGGTGAGATGGATGAGTTGCATGGCAGTAATTTTCTTAATCCCTCCTCTCAATCTAAGTCGCAAACTTTCCATATTGAAATGGGAACTGAAGATTCTGCTCATTCACAGGAGTCTCCTCTGACAGAACGTGCAAACCAGGGAGTGGGAGAGGATGATTCTAACATGGGTAGGCCTACTGCTGTACCTCATGCTGGAAGAGCGAAAATGATTTATTCCGAGAGGTCACAATATGAATCAGTTAAGTCTTCCATTCATGAAGTAGAAAGGGAAGCTAGTGATCAATGGAAAGAGCAATTGTTATCATCTCCTAGGTTGCACAGGTGGGATAATGAAAATAAGAATGATGAGTCGCCAGGTCAGAACAATAACCCAGGCATCGGCAATTCTGATATTCAATCTCTCGGAAGAATCGCCAGAGGATCAATATCTCCTAGAATAAAAAGACAAATGTCACTTTCGCCTGAAGACTCTCCATCATGCCACTTGCCTAATAACCGTGAGCATTTGCCTTCTCATCAAGGTTCTCAAGACCAATCACTTGCACCAAGATCACATAGCCAACATATTTCTTCACCCGATCATTATCTCCCGCCTACACAGGGCATTCGACAATTTTCCCACCACAGGGATAGTTCTGCTCTGAAGCACATATCTGCATCTCCAAGGTTGCATGCCTCACCCCCAAGGTCGTATCACTCACCTCGAAGGTCCCGTCGCTCACCCCCAAGGTCCCATCACTCACAATCAAATTATGGGAGAAGGGACAGATTGGAGTCACGATCACCCATTCGGCATAGAGATTCTTTTGGTTTCCAGAGGGCTTATCGTGAGAGATCTCGATCAAGGTCCCCATATTCAAGAGCTCATCATAGATCGACAAGGGGAAGACATTCTCCAATGCAAAGGTCCCCTTCTACAAAGAATCATTCTCGTCACCGATCTCCTAGAAGGAAACCATGGTCACCACCGCCTAATAGGAAAACTGGATTAGGGAAACCTGGAAGAAATTTATTTGTTGCAGGTTTTAGTTTTTTGACTACAGAGAGAGATCTGGAAAGGAAGTTTTCTAGGTATGGCCGAGTACGAGATGTTCGTATTGTTAGAGACAAAAGGTCTGGAGATTCACGTGGATTCGGATTCTTGACCTTGGAAAGGGATGAAGATGCCGATGCAGCAATCAGAGCTCTAGATGAGACTGAGTGGAATGGTCGGATTATTCTTGTGGAGAAATCCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

522

Amino Acids

59.77

Weight (kDa)

9.09

Isoelectric Point (pI)

82.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1334
AccB7I CCANNNNNTGG 1 cut(s) 466
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 2 cut(s) 914, 1292
AclWI GGATC 3 cut(s) 127, 135, 751
AcoI YGGCCR 1 cut(s) 1399
AcsI RAATTY 3 cut(s) 192, 266, 1330
AcuI CTGAAG 3 cut(s) 432, 807, 986
AcvI CACGTG 1 cut(s) 1451
AfaI GTAC 2 cut(s) 507, 1407
AfiI CCNNNNNNNGG 7 cut(s) 466, 515, 701, 923, 948, 949, 1476
AgsI TTSAA 9 cut(s) 21, 104, 121, 184, 260, 304, 401, 719, 1182
AhdI GACNNNNNGTC 1 cut(s) 1435
AjnI CCWGG 4 cut(s) 459, 676, 694, 1321
AluBI AGCT 4 cut(s) 99, 596, 1187, 1508
AluI AGCT 4 cut(s) 99, 596, 1187, 1508
Alw21I GWGCWC 2 cut(s) 1189, 1510
Alw26I GTCTC 4 cut(s) 300, 441, 1422, 1511
AlwI GGATC 3 cut(s) 127, 135, 751
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 2 cut(s) 494, 1399
ApeKI GCWGC 1 cut(s) 1496
ApoI RAATTY 3 cut(s) 192, 266, 1330
ArsI GACNNNNNNTTYG 4 cut(s) 32, 64, 1021, 1053
Asp700I GAANNNNTTC 2 cut(s) 204, 1213
AspA2I CCTAGG 1 cut(s) 632
AspS9I GGNCC 4 cut(s) 1032, 1053, 1170, 1230
AsuHPI GGTGA 8 cut(s) 338, 888, 993, 1014, 1035, 1098, 1250, 1278
AvaII GGWCC 4 cut(s) 1032, 1053, 1170, 1230
AvrII CCTAGG 1 cut(s) 632
BaeI ACNNNNGTAYC 2 cut(s) 489, 522
BanII GRGCYC 2 cut(s) 1189, 1510
BbrPI CACGTG 1 cut(s) 1451
BbsI GAAGAC 3 cut(s) 561, 795, 1216
Bbv12I GWGCWC 2 cut(s) 1189, 1510
BbvI GCAGC 1 cut(s) 1508
BccI CCATC 3 cut(s) 325, 805, 1065
BciT130I CCWGG 4 cut(s) 461, 678, 696, 1323
BclI TGATCA 2 cut(s) 241, 601
BcoDI GTCTC 4 cut(s) 300, 441, 1422, 1511
BfaI CTAG 7 cut(s) 30, 597, 633, 756, 1269, 1392, 1511
BfmI CTRYAG 1 cut(s) 1362
BfuAI ACCTGC 1 cut(s) 1334
BglII AGATCT 2 cut(s) 1157, 1372
BisI GCNGC 1 cut(s) 1497
BlnI CCTAGG 1 cut(s) 632
BlsI GCNGC 1 cut(s) 1498
Bme1390I CCNGG 4 cut(s) 461, 678, 696, 1323
Bme18I GGWCC 4 cut(s) 1032, 1053, 1170, 1230
BmeRI GACNNNNNGTC 1 cut(s) 1435
BmgT120I GGNCC 4 cut(s) 1032, 1053, 1170, 1230
BmiI GGNNCC 4 cut(s) 1034, 1055, 1172, 1232
BmrFI CCNGG 4 cut(s) 461, 678, 696, 1323
BmsI GCATC 4 cut(s) 708, 989, 1477, 1483
BoxI GACNNNNGTC 1 cut(s) 772
BpiI GAAGAC 3 cut(s) 561, 795, 1216
BpmI CTGGAG 1 cut(s) 1461
BpuEI CTTGAG 1 cut(s) 834
BsaAI YACGTR 1 cut(s) 1451
BsaBI GATNNNNATC 3 cut(s) 748, 906, 1162
BsaJI CCNNGG 9 cut(s) 322, 460, 632, 694, 986, 1007, 1049, 1280, 1470
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 7 cut(s) 466, 515, 701, 923, 948, 949, 1476
Bse1I ACTGG 1 cut(s) 1312
Bse8I GATNNNNATC 3 cut(s) 748, 906, 1162
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 4 cut(s) 461, 678, 696, 1323
BseDI CCNNGG 9 cut(s) 322, 460, 632, 694, 986, 1007, 1049, 1280, 1470
BseGI GGATG 4 cut(s) 19, 340, 481, 1486
BseJI GATNNNNATC 3 cut(s) 748, 906, 1162
BseLI CCNNNNNNNGG 7 cut(s) 466, 515, 701, 923, 948, 949, 1476
BseMII CTCAG 2 cut(s) 282, 1512
BseNI ACTGG 1 cut(s) 1312
BseRI GAGGAG 2 cut(s) 358, 429
BseXI GCAGC 1 cut(s) 1508
BshFI GGCC 2 cut(s) 496, 1401
BsiHKAI GWGCWC 2 cut(s) 1189, 1510
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 7 cut(s) 138, 212, 1018, 1039, 1100, 1156, 1216
BslI CCNNNNNNNGG 7 cut(s) 466, 515, 701, 923, 948, 949, 1476
BsmAI GTCTC 4 cut(s) 300, 441, 1422, 1511
BsmFI GGGAC 7 cut(s) 138, 212, 1018, 1039, 1100, 1156, 1216
BsmI GAATGC 1 cut(s) 927
BsnI GGCC 2 cut(s) 496, 1401
Bsp1286I GDGCHC 2 cut(s) 1189, 1510
Bsp13I TCCGGA 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 1280
BspACI CCGC 2 cut(s) 914, 1292
BspANI GGCC 2 cut(s) 496, 1401
BspCNI CTCAG 2 cut(s) 283, 1513
BspEI TCCGGA 1 cut(s) 208
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 4 cut(s) 1034, 1055, 1172, 1232
BspMI ACCTGC 1 cut(s) 1334
BspPI GGATC 3 cut(s) 127, 135, 751
BspQI GCTCTTC 1 cut(s) 514
BsrI ACTGG 1 cut(s) 1312
BssECI CCNNGG 9 cut(s) 322, 460, 632, 694, 986, 1007, 1049, 1280, 1470
BssT1I CCWWGG 7 cut(s) 322, 632, 986, 1007, 1049, 1280, 1470
Bst2UI CCWGG 4 cut(s) 461, 678, 696, 1323
Bst4CI ACNGT 2 cut(s) 251, 821
Bst6I CTCTTC 2 cut(s) 210, 514
BstBAI YACGTR 1 cut(s) 1451
BstC8I GCNNGC 1 cut(s) 996
BstDEI CTNAG 3 cut(s) 291, 378, 1521
BstDSI CCRYGG 1 cut(s) 1280
BstEII GGTNACC 1 cut(s) 1284
BstENI CCTNNNNNAGG 1 cut(s) 1474
BstF5I GGATG 4 cut(s) 19, 340, 481, 1486
BstMAI GTCTC 4 cut(s) 300, 441, 1422, 1511
BstMWI GCNNNNNNNGC 3 cut(s) 521, 1496, 1505
BstNI CCWGG 4 cut(s) 461, 678, 696, 1323
BstNSI RCATGY 1 cut(s) 998
BstPAI GACNNNNGTC 1 cut(s) 772
BstPI GGTNACC 1 cut(s) 1284
BstSCI CCNGG 4 cut(s) 459, 676, 694, 1321
BstSFI CTRYAG 1 cut(s) 1362
BstV1I GCAGC 1 cut(s) 1508
BstV2I GAAGAC 3 cut(s) 561, 795, 1216
BstX2I RGATCY 3 cut(s) 127, 1157, 1372
BstYI RGATCY 3 cut(s) 127, 1157, 1372
BsuRI GGCC 2 cut(s) 496, 1401
BtgI CCRYGG 1 cut(s) 1280
BtsCI GGATG 4 cut(s) 19, 340, 481, 1486
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 1334
Cac8I GCNNGC 1 cut(s) 996
CciI TCATGA 1 cut(s) 577
Cfr13I GGNCC 4 cut(s) 1032, 1053, 1170, 1230
Csp6I GTAC 2 cut(s) 506, 1406
CviQI GTAC 2 cut(s) 506, 1406
DdeI CTNAG 3 cut(s) 291, 378, 1521
DriI GACNNNNNGTC 1 cut(s) 1435
EaeI YGGCCR 1 cut(s) 1399
Eam1104I CTCTTC 2 cut(s) 210, 514
Eam1105I GACNNNNNGTC 1 cut(s) 1435
EarI CTCTTC 2 cut(s) 210, 514
Ecl136II GAGCTC 2 cut(s) 1187, 1508
Eco130I CCWWGG 7 cut(s) 322, 632, 986, 1007, 1049, 1280, 1470
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 1189, 1510
Eco47I GGWCC 4 cut(s) 1032, 1053, 1170, 1230
Eco53kI GAGCTC 2 cut(s) 1187, 1508
Eco57I CTGAAG 3 cut(s) 432, 807, 986
Eco72I CACGTG 1 cut(s) 1451
Eco91I GGTNACC 1 cut(s) 1284
EcoICRI GAGCTC 2 cut(s) 1187, 1508
EcoNI CCTNNNNNAGG 1 cut(s) 1474
EcoO109I RGGNCCY 4 cut(s) 1032, 1053, 1170, 1230
EcoO65I GGTNACC 1 cut(s) 1284
EcoRII CCWGG 4 cut(s) 459, 676, 694, 1321
EcoT14I CCWWGG 7 cut(s) 322, 632, 986, 1007, 1049, 1280, 1470
EcoT38I GRGCYC 2 cut(s) 1189, 1510
ErhI CCWWGG 7 cut(s) 322, 632, 986, 1007, 1049, 1280, 1470
FalI AAGNNNNNCTT 2 cut(s) 1219, 1251
FaqI GGGAC 7 cut(s) 138, 212, 1018, 1039, 1100, 1156, 1216
FauI CCCGC 1 cut(s) 921
FbaI TGATCA 2 cut(s) 241, 601
Fnu4HI GCNGC 1 cut(s) 1497
FokI GGATG 4 cut(s) 26, 347, 488, 1493
FriOI GRGCYC 2 cut(s) 1189, 1510
Fsp4HI GCNGC 1 cut(s) 1497
FspBI CTAG 7 cut(s) 30, 597, 633, 756, 1269, 1392, 1511
GluI GCNGC 1 cut(s) 1497
GsuI CTGGAG 1 cut(s) 1461
HaeIII GGCC 2 cut(s) 496, 1401
HapII CCGG 1 cut(s) 209
HpaII CCGG 1 cut(s) 209
HphI GGTGA 8 cut(s) 338, 888, 993, 1014, 1035, 1098, 1250, 1278
Hpy99I CGWCG 1 cut(s) 1041
HpyAV CCTTC 5 cut(s) 843, 1023, 1077, 1245, 1266
HpyCH4III ACNGT 2 cut(s) 251, 821
HpyCH4IV ACGT 3 cut(s) 63, 451, 1450
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 1496, 1505
HpyF3I CTNAG 3 cut(s) 291, 378, 1521
HpySE526I ACGT 3 cut(s) 63, 451, 1450
Kpn2I TCCGGA 1 cut(s) 208
Ksp22I TGATCA 2 cut(s) 241, 601
LguI GCTCTTC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 1508
LweI GCATC 4 cut(s) 708, 989, 1477, 1483
MaeI CTAG 7 cut(s) 30, 597, 633, 756, 1269, 1392, 1511
MaeII ACGT 3 cut(s) 63, 451, 1450
MaeIII GTNAC 5 cut(s) 546, 774, 1098, 1256, 1284
MfeI CAATTG 1 cut(s) 617
MflI RGATCY 3 cut(s) 127, 1157, 1372
MhlI GDGCHC 2 cut(s) 1189, 1510
MluCI AATT 8 cut(s) 192, 266, 352, 617, 706, 935, 1072, 1330
MlyI GAGTC 6 cut(s) 160, 302, 443, 680, 785, 1106
MmeI TCCRAC 2 cut(s) 160, 1514
MroI TCCGGA 1 cut(s) 208
MroXI GAANNNNTTC 2 cut(s) 204, 1213
MseI TTAA 3 cut(s) 45, 360, 564
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 4 cut(s) 461, 678, 696, 1323
MunI CAATTG 1 cut(s) 617
Mva1269I GAATGC 1 cut(s) 927
MvaI CCWGG 4 cut(s) 461, 678, 696, 1323
MwoI GCNNNNNNNGC 3 cut(s) 521, 1496, 1505
NcoI CCATGG 1 cut(s) 1280
NlaIV GGNNCC 4 cut(s) 1034, 1055, 1172, 1232
NmeAIII GCCGAG 1 cut(s) 1427
NmuCI GTSAC 5 cut(s) 546, 774, 1098, 1256, 1284
NspI RCATGY 1 cut(s) 998
PaeI GCATGC 1 cut(s) 998
PagI TCATGA 1 cut(s) 577
PceI AGGCCT 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 514
PcsI WCGNNNNNNNCGW 2 cut(s) 1033, 1414
PctI GAATGC 1 cut(s) 927
PdmI GAANNNNTTC 2 cut(s) 204, 1213
PflFI GACNNNGTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 1 cut(s) 1498
PleI GAGTC 6 cut(s) 159, 301, 442, 679, 785, 1105
PmaCI CACGTG 1 cut(s) 1451
PmlI CACGTG 1 cut(s) 1451
PpsI GAGTC 6 cut(s) 159, 301, 442, 679, 785, 1105
Ppu21I YACGTR 1 cut(s) 1451
PpuMI RGGWCCY 4 cut(s) 1032, 1053, 1170, 1230
PshAI GACNNNNGTC 1 cut(s) 772
Psp124BI GAGCTC 2 cut(s) 1189, 1510
Psp5II RGGWCCY 4 cut(s) 1032, 1053, 1170, 1230
Psp6I CCWGG 4 cut(s) 459, 676, 694, 1321
PspCI CACGTG 1 cut(s) 1451
PspEI GGTNACC 1 cut(s) 1284
PspGI CCWGG 4 cut(s) 459, 676, 694, 1321
PspN4I GGNNCC 4 cut(s) 1034, 1055, 1172, 1232
PspPI GGNCC 4 cut(s) 1032, 1053, 1170, 1230
PspPPI RGGWCCY 4 cut(s) 1032, 1053, 1170, 1230
PsrI GAACNNNNNNTAC 2 cut(s) 1398, 1430
PsuI RGATCY 3 cut(s) 127, 1157, 1372
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 2 cut(s) 507, 1407
RsaNI GTAC 2 cut(s) 506, 1406
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 2 cut(s) 1189, 1510
SapI GCTCTTC 1 cut(s) 514
SaqAI TTAA 3 cut(s) 45, 360, 564
SatI GCNGC 1 cut(s) 1497
Sau96I GGNCC 4 cut(s) 1032, 1053, 1170, 1230
SchI GAGTC 6 cut(s) 160, 302, 443, 680, 785, 1106
ScrFI CCNGG 4 cut(s) 461, 678, 696, 1323
SduI GDGCHC 2 cut(s) 1189, 1510
SfaNI GCATC 4 cut(s) 708, 989, 1477, 1483
SfcI CTRYAG 1 cut(s) 1362
SinI GGWCC 4 cut(s) 1032, 1053, 1170, 1230
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 849
SmoI CTYRAG 1 cut(s) 849
SphI GCATGC 1 cut(s) 998
Sse9I AATT 8 cut(s) 192, 266, 352, 617, 706, 935, 1072, 1330
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 2 cut(s) 914, 1292
SspMI CTAG 7 cut(s) 30, 597, 633, 756, 1269, 1392, 1511
SstI GAGCTC 2 cut(s) 1189, 1510
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 4 cut(s) 459, 676, 694, 1321
StyI CCWWGG 7 cut(s) 322, 632, 986, 1007, 1049, 1280, 1470
TaaI ACNGT 2 cut(s) 251, 821
TaiI ACGT 3 cut(s) 66, 454, 1453
TaqI TCGA 4 cut(s) 931, 1027, 1162, 1199
TasI AATT 8 cut(s) 192, 266, 352, 617, 706, 935, 1072, 1330
Tru1I TTAA 3 cut(s) 45, 360, 564
Tru9I TTAA 3 cut(s) 45, 360, 564
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 5 cut(s) 546, 774, 1098, 1256, 1284
TseI GCWGC 1 cut(s) 1496
Tsp45I GTSAC 5 cut(s) 546, 774, 1098, 1256, 1284
TspDTI ATGAA 7 cut(s) 105, 204, 566, 570, 594, 669, 1497
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 4 cut(s) 1032, 1053, 1170, 1230
XagI CCTNNNNNAGG 1 cut(s) 1474
XapI RAATTY 3 cut(s) 192, 266, 1330
XbaI TCTAGA 1 cut(s) 1510
XceI RCATGY 1 cut(s) 998
XmaJI CCTAGG 1 cut(s) 632
XmnI GAANNNNTTC 2 cut(s) 204, 1213
XspI CTAG 7 cut(s) 30, 597, 633, 756, 1269, 1392, 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.