Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005908

Physical Location & Seq

Genomic Coordinates Forward (+)

35301094 .. 35306287

Gene Structure 5194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG267600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGATGATTGTCTTGAAAATGATGATTCCATGTTGACCAGAGAACCAGACATTAAATATGCAGTTGATAACGTTGAAGTCGTTCATGGTTACGTGGATGAAAAAGGCTTTGATAGAAGGGATGATTCCAATGAGGATCTCAACCAGCATGAGCAACAGATTTCTCACTCACTAGATGCAGACTTCAGAGATCAAATTTCAGAATCTCCAGAAAAATCTTATCACGTGCCCATTGAATCTGATCATGACAATGCCATAGAAACAAAATCTGACCTTCAAGAGAGGACTCAGTCCACATACAATGATAGTAATCATTACCAAGGTGAGATGGATGAGTTGCATGGCAGTAATTTTTTTAAAACCTCCTCTCAATCTAAGTCGCAAACTTTCGATAATGAAATGGGAACTGAAGATTCTCCTAATTCACAGGAGTCTCCTCTGACAGAAAATAGGAACCAGGGAGCCGGAGATTCTGACTTGGTTAGGTCACCTCATACTGGAAGAGCAGGGATTGTAAGCTCAGAGAAGTTACAAGATGATTCAATTACGTCTTCCATTCATGAAATAGAAAAGGAAGCTACTGATATACAAACATGGCAGTCATTATCTTCTCCTAAATCCCACTGGTTAAATAATGAACCTAACGAAGATGACTCCTCGGGTGAGAACAGAATACGAGGAGTACCCCAGTCTCTTGGAAGATCAGCTGGAGGATCAATTTCTCCTGTGACTAGGAGACAAATGTCAATTTTACCTGAAGGGTCTCCTTTGCCACTTCACTCTCTCCATGACCGTAAGCATATATCTTCTCAGCAAGGTTCTCCAGACCCATCATATGAACCTCAATCTCATAGACAGAGAATTTCTTCACCTCAAAGGTCTGACATGCATACAGGAGTTTTCCCTGGTCATTTATCTCCTGTGAGGCAAACCTCTGTTTCTACACATGGCATTCGGCAAGAGCCCCTGCAAGACAGTTTTGCAGTGAAGCACATATCTGCATCCCTAAAGTCCCATCACTCGCATCCAAAGTATCGGAAAAGGGACAGATCAGAGTCACGATCACCCACTCAGCATAGAGATTCACCCACTCGGTGTAGAGATTCACCCACTAGGCAGAGAGGTTCACCGTCTCGGCACAGAGGTTCACCCATTCGACATAGAGGTTCTCCTACTGGTCATAGAGATTCACCCACTCGGCATAGAGATTCTTATGCCTACCAGAGAGATTATCGTGATAGATTTCGATCCAGGTCCCCATATTCAACATCCCATCATAGATCAAGATCCCCTTATACAAGAGCCCATTACAGATCAAGATCCCCTTATTCAAGAGACCATCATAGATCGACAAGGTTAACTTCTATACCCTCTCCCTTTTCTTATGATAAATTTGTTCATCATCAATGTGGTCTGGCAACAAAGTTATTTGATAGTGTTAGAATTGGTTTATCTGTTAATCTCTTTCACTTGATAAGTCTATCTGATGACCTCAAAATTGAGACAATTGCATTTTCTCATACAAAATTTATGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

512

Amino Acids

58.37

Weight (kDa)

6.66

Isoelectric Point (pI)

80.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005908)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720
malus_domestica	MD03G1200600.v1.1
prunus_persica	Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039641
rosa_laevigata	RLG00000033933
rosa_multiflora	Rmu_ssc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_1G00041570
rosa_rugosa	Rorug05G0180400 Rorug05G0180500 Rorug05G0180600 Rorug05G0180700 Rorug05G0180800
rosa_samantha	Rh5AG267600 Rh5BG271900 Rh5CG304500 Rh5DG279600
rosa_wichuraiana	Rw5G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	5 cut(s)	144, 721, 1242, 1281, 1314
AcsI	RAATTY	4 cut(s)	195, 861, 1391, 1526
AcuI	CTGAAG	3 cut(s)	169, 429, 777
AcvI	CACGTG	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	1095
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	7 cut(s)	17, 77, 236, 278, 543, 1266, 1332
AjnI	CCWGG	3 cut(s)	456, 904, 1250
AluBI	AGCT	3 cut(s)	519, 578, 707
AluI	AGCT	3 cut(s)	519, 578, 707
Alw26I	GTCTC	7 cut(s)	438, 696, 730, 768, 1137, 1329, 1496
AlwI	GGATC	5 cut(s)	144, 721, 1242, 1281, 1314
Ama87I	CYCGRG	1 cut(s)	658
ApoI	RAATTY	4 cut(s)	195, 861, 1391, 1526
Asp700I	GAANNNNTTC	2 cut(s)	81, 865
AspS9I	GGNCC	1 cut(s)	1254
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	1254
BaeGI	GKGCMC	1 cut(s)	231
BanII	GRGCYC	2 cut(s)	966, 1306
BbrPI	CACGTG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	543
BccI	CCATC	5 cut(s)	322, 838, 1023, 1281, 1347
BciT130I	CCWGG	3 cut(s)	458, 906, 1252
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	7 cut(s)	438, 696, 730, 768, 1137, 1329, 1496
BfaI	CTAG	4 cut(s)	173, 732, 1113, 1537
Bme1390I	CCNGG	3 cut(s)	458, 906, 1252
Bme18I	GGWCC	1 cut(s)	1254
BmeT110I	CYCGRG	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	1254
BmiI	GGNNCC	3 cut(s)	455, 463, 1256
BmrFI	CCNGG	3 cut(s)	458, 906, 1252
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	3 cut(s)	166, 1010, 1033
BmuI	ACTGGG	1 cut(s)	682
BoxI	GACNNNNGTC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	3 cut(s)	192, 729, 807
BsaAI	YACGTR	2 cut(s)	94, 226
BsaBI	GATNNNNATC	4 cut(s)	309, 1246, 1285, 1318
BsaI	GGTCTC	2 cut(s)	768, 1329
BsaJI	CCNNGG	4 cut(s)	319, 457, 657, 904
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	4 cut(s)	502, 629, 688, 1180
Bse8I	GATNNNNATC	4 cut(s)	309, 1246, 1285, 1318
BseBI	CCWGG	3 cut(s)	458, 906, 1252
BseDI	CCNNGG	4 cut(s)	319, 457, 657, 904
BseGI	GGATG	7 cut(s)	10, 103, 127, 337, 1001, 1024, 1268
BseJI	GATNNNNATC	4 cut(s)	309, 1246, 1285, 1318
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	4 cut(s)	302, 534, 824, 1085
BseNI	ACTGG	4 cut(s)	502, 629, 688, 1180
BseRI	GAGGAG	4 cut(s)	355, 426, 646, 693
BseSI	GKGCMC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	3 cut(s)	997, 1058, 1240
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	7 cut(s)	438, 696, 730, 768, 1137, 1329, 1496
BsmBI	CGTCTC	1 cut(s)	1137
BsmFI	GGGAC	3 cut(s)	997, 1058, 1240
BsmI	GAATGC	1 cut(s)	951
Bso31I	GGTCTC	2 cut(s)	768, 1329
BsoBI	CYCGRG	1 cut(s)	658
Bsp1286I	GDGCHC	3 cut(s)	231, 966, 1306
BspCNI	CTCAG	4 cut(s)	301, 533, 823, 1084
BspHI	TCATGA	2 cut(s)	244, 559
BspLI	GGNNCC	3 cut(s)	455, 463, 1256
BspPI	GGATC	5 cut(s)	144, 721, 1242, 1281, 1314
BspQI	GCTCTTC	1 cut(s)	496
BspTNI	GGTCTC	2 cut(s)	768, 1329
BsrI	ACTGG	4 cut(s)	502, 629, 688, 1180
BssECI	CCNNGG	4 cut(s)	319, 457, 657, 904
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	3 cut(s)	458, 906, 1252
Bst4CI	ACNGT	3 cut(s)	794, 977, 1131
Bst6I	CTCTTC	1 cut(s)	496
BstBAI	YACGTR	2 cut(s)	94, 226
BstDEI	CTNAG	5 cut(s)	288, 375, 520, 810, 1071
BstEII	GGTNACC	1 cut(s)	486
BstF5I	GGATG	7 cut(s)	10, 103, 127, 337, 1001, 1024, 1268
BstMAI	GTCTC	7 cut(s)	438, 696, 730, 768, 1137, 1329, 1496
BstNI	CCWGG	3 cut(s)	458, 906, 1252
BstNSI	RCATGY	1 cut(s)	889
BstPAI	GACNNNNGTC	1 cut(s)	742
BstPI	GGTNACC	1 cut(s)	486
BstSCI	CCNGG	3 cut(s)	456, 904, 1250
BstSLI	GKGCMC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	3 cut(s)	136, 1286, 1319
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	3 cut(s)	136, 1286, 1319
BtsCI	GGATG	7 cut(s)	10, 103, 127, 337, 1001, 1024, 1268
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	2 cut(s)	622, 990
CciI	TCATGA	2 cut(s)	244, 559
Cfr13I	GGNCC	1 cut(s)	1254
Csp6I	GTAC	1 cut(s)	683
CviJI	RGCY	7 cut(s)	108, 464, 519, 578, 707, 964, 1304
CviKI_1	RGCY	7 cut(s)	108, 464, 519, 578, 707, 964, 1304
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	5 cut(s)	288, 375, 520, 810, 1071
DraI	TTTAAA	1 cut(s)	358
DraIII	CACNNNGTG	1 cut(s)	1095
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	966, 1306
Eco31I	GGTCTC	2 cut(s)	768, 1329
Eco47I	GGWCC	1 cut(s)	1254
Eco57I	CTGAAG	3 cut(s)	169, 429, 777
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	658
Eco91I	GGTNACC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	1254
EcoO65I	GGTNACC	1 cut(s)	486
EcoRII	CCWGG	3 cut(s)	456, 904, 1250
EcoT14I	CCWWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	891
EcoT38I	GRGCYC	2 cut(s)	966, 1306
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	1137
FalI	AAGNNNNNCTT	6 cut(s)	1276, 1308, 1309, 1341, 1345, 1377
FaqI	GGGAC	3 cut(s)	997, 1058, 1240
FauNDI	CATATG	1 cut(s)	835
FbaI	TGATCA	1 cut(s)	241
FokI	GGATG	7 cut(s)	17, 110, 134, 344, 988, 1011, 1255
FriOI	GRGCYC	2 cut(s)	966, 1306
FspBI	CTAG	4 cut(s)	173, 732, 1113, 1537
GsuI	CTGGAG	3 cut(s)	192, 729, 807
HapII	CCGG	1 cut(s)	465
HincII	GTYRAC	2 cut(s)	36, 1359
HindII	GTYRAC	2 cut(s)	36, 1359
HpaI	GTTAAC	1 cut(s)	1359
HpaII	CCGG	1 cut(s)	465
Hpy166II	GTNNAC	5 cut(s)	36, 294, 1127, 1148, 1359
Hpy8I	GTNNAC	5 cut(s)	36, 294, 1127, 1148, 1359
HpyAV	CCTTC	3 cut(s)	111, 284, 752
HpyCH4III	ACNGT	3 cut(s)	794, 977, 1131
HpyCH4IV	ACGT	4 cut(s)	72, 93, 225, 548
HpyCH4V	TGCA	8 cut(s)	62, 179, 340, 889, 970, 983, 1001, 1511
HpyF3I	CTNAG	5 cut(s)	288, 375, 520, 810, 1071
HpySE526I	ACGT	4 cut(s)	72, 93, 225, 548
Ksp22I	TGATCA	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	1359
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	461
LweI	GCATC	3 cut(s)	166, 1010, 1033
MaeI	CTAG	4 cut(s)	173, 732, 1113, 1537
MaeII	ACGT	4 cut(s)	72, 93, 225, 548
MaeIII	GTNAC	5 cut(s)	89, 486, 528, 727, 1056
MboII	GAAGA	8 cut(s)	422, 513, 543, 600, 659, 711, 798, 858
MfeI	CAATTG	1 cut(s)	1506
MflI	RGATCY	3 cut(s)	136, 1286, 1319
MhlI	GDGCHC	3 cut(s)	231, 966, 1306
MlyI	GAGTC	4 cut(s)	280, 440, 647, 1064
Mph1103I	ATGCAT	1 cut(s)	891
MroXI	GAANNNNTTC	2 cut(s)	81, 865
MseI	TTAA	5 cut(s)	54, 357, 629, 1358, 1458
MslI	CAYNNNNRTG	2 cut(s)	249, 1407
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	3 cut(s)	458, 906, 1252
MunI	CAATTG	1 cut(s)	1506
Mva1269I	GAATGC	1 cut(s)	951
MvaI	CCWGG	3 cut(s)	458, 906, 1252
NdeI	CATATG	1 cut(s)	835
NlaIV	GGNNCC	3 cut(s)	455, 463, 1256
NmeAIII	GCCGAG	2 cut(s)	1114, 1177
NmuCI	GTSAC	3 cut(s)	486, 727, 1056
NsiI	ATGCAT	1 cut(s)	891
NspI	RCATGY	1 cut(s)	889
PagI	TCATGA	2 cut(s)	244, 559
PciSI	GCTCTTC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	951
PdmI	GAANNNNTTC	2 cut(s)	81, 865
PflFI	GACNNNGTC	1 cut(s)	289
PleI	GAGTC	4 cut(s)	280, 439, 647, 1063
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	4 cut(s)	280, 439, 647, 1063
Ppu21I	YACGTR	2 cut(s)	94, 226
PpuMI	RGGWCCY	1 cut(s)	1254
PshAI	GACNNNNGTC	1 cut(s)	742
Psp1406I	AACGTT	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	1254
Psp6I	CCWGG	3 cut(s)	456, 904, 1250
PspCI	CACGTG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	486
PspGI	CCWGG	3 cut(s)	456, 904, 1250
PspN4I	GGNNCC	3 cut(s)	455, 463, 1256
PspPI	GGNCC	1 cut(s)	1254
PspPPI	RGGWCCY	1 cut(s)	1254
PsuI	RGATCY	3 cut(s)	136, 1286, 1319
PsyI	GACNNNGTC	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
RseI	CAYNNNNRTG	2 cut(s)	249, 1407
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	5 cut(s)	54, 357, 629, 1358, 1458
Sau96I	GGNCC	1 cut(s)	1254
SchI	GAGTC	4 cut(s)	280, 440, 647, 1064
ScrFI	CCNGG	3 cut(s)	458, 906, 1252
SduI	GDGCHC	3 cut(s)	231, 966, 1306
SfaNI	GCATC	3 cut(s)	166, 1010, 1033
SinI	GGWCC	1 cut(s)	1254
SmiMI	CAYNNNNRTG	2 cut(s)	249, 1407
SspMI	CTAG	4 cut(s)	173, 732, 1113, 1537
StyD4I	CCNGG	3 cut(s)	456, 904, 1250
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	794, 977, 1131
TaiI	ACGT	4 cut(s)	75, 96, 228, 551
TaqI	TCGA	4 cut(s)	390, 1156, 1246, 1349
Tru1I	TTAA	5 cut(s)	54, 357, 629, 1358, 1458
Tru9I	TTAA	5 cut(s)	54, 357, 629, 1358, 1458
TscAI	CASTG	2 cut(s)	629, 990
TseFI	GTSAC	3 cut(s)	486, 727, 1056
Tsp45I	GTSAC	3 cut(s)	486, 727, 1056
TspDTI	ATGAA	8 cut(s)	74, 114, 411, 548, 576, 651, 852, 1388
TspRI	CASTG	2 cut(s)	629, 990
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	1254
XapI	RAATTY	4 cut(s)	195, 861, 1391, 1526
XceI	RCATGY	1 cut(s)	889
XmnI	GAANNNNTTC	2 cut(s)	81, 865
XspI	CTAG	4 cut(s)	173, 732, 1113, 1537
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.