Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005908

Physical Location & Seq

Genomic Coordinates Forward (+)

34246288 .. 34252974

Gene Structure 6687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGATGATTGTCTTGAAAATGATGATTCCATGTTGACCAGAGAACCAGACATTAAATATGCAGTTGATAACGTTGAAGTCGTTCATGGTTACGTGGATGAAAAAGGCTTTGATAGAAGGGATGATTCCAATGAGGATCTCAACCAGCATGAGCAACAGATTTCTCACTCACTAGATGCAGACTTCAGAGATCAAATTTCAGAATCTCCGGAAAAATCTTATCACGTGCCCATTGAATCTGATCATGACAATGCCATAGAAACAAAATCTGACCTTCAAGAGAGGACTCAGTCCACATACAATGATAGTAATCATTACCAAGGTGAGATGGATGAGTTGCATGGCAGTAATTTTTTTAAAACCTCCTCTCAATCTAAGTCGCAAACTTTCGATAATGAAATGGGAACTGAAGATTCTCCTAATTCACAGGAGTCTCCTCTGACAGAAAATAAGAACCAGGCAGCCGGAGATTCTGACTTGGTTAGGTCACCTCGTACTGGAAGAGCAAGGAATATCAGCTCAGAGAAGTTACAAGATGATTCAATTACATCTTCCATTCATGAAATAGAAAAGGAAGCTACTGATATACAAACATGGCAGTCATTATCTTCTCCTAAATCCCACTGGTTAAATAATAAACCTAACGAAGATGACTCCTCGGGTGAGAACAGAATACGAGGAGTACCCCAGTCTGACCTTCAATTTCTTGGAAGATCAGCCGGAGGATCAATTTCTCCAGTGACTAGGAGAGAAATGTCAATTTCACCTGAAGGGTCTCCTTTGCCACTTCACTCTCTCCATGACAGTAAGCATATATCTTCTCAGCAAGGTTCTCCAGACCCATCATATGAACCTCAATCTCATAGACAGAGAGTTTCTTCACCTCAAAGGTCTGACATGCATACAGGAGTTTTCCCTGGTCATTTATCTCCTGTGAGGCAAACCTCTGTTTCTACACATGACATTCGGCAAGAGCCCCTGCAAGACAGTTTTGCAGTGAAGCACATATCTACATCCCTAAAGTCCCATCACTCGCATCCAAAGTATCGGAAAAGGGACAGATCAGAGTCACGATCACCCACTCAGCATAGAGATTCACCCACTAGGCAGAGAGGTTCGCCGTCTCGGCACAGAGGTTCTCCTACTGGTCATAGAGATTCACCCACTCGGCATAGAGATTCTTATGCCTACCAGAGAGATTATCGTGATAGATTTCAATCAAGGTCCCCATATTCAAAATCCCATCATAGATCAAGGTCCCCTTATTCAAGAGCCCATAATAGATCAAGATCCCCTTATTCAAGAGACCATCATAGATCGACAAGGTTAACTTCTATACCCTCTCCCTTTTCTTATGATAAATTTGTTTATCATCAATGTGGTCTGGCAACAAAGTTATTTGATAGTGTTAGATTTGGTTTATCTGTTAATCTCTTTCACTTGATTAGTCTATCTGATGACCTCAAAAGTGAGACAGTTGCATTTTCTGATACAAAATTTATGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

502

Amino Acids

57.28

Weight (kDa)

6.33

Isoelectric Point (pI)

82.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005908)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720
malus_domestica	MD03G1200600.v1.1
prunus_persica	Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039641
rosa_laevigata	RLG00000033933
rosa_multiflora	Rmu_ssc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_1G00041570
rosa_rugosa	Rorug05G0180400 Rorug05G0180500 Rorug05G0180600 Rorug05G0180700 Rorug05G0180800
rosa_samantha	Rh5AG267600 Rh5BG271900 Rh5CG304500 Rh5DG279600
rosa_wichuraiana	Rw5G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	208
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	3 cut(s)	144, 733, 1284
AcsI	RAATTY	3 cut(s)	195, 1361, 1496
AcuI	CTGAAG	3 cut(s)	169, 429, 789
AcvI	CACGTG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	496, 684
AfiI	CCNNNNNNNGG	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	456, 916
AluBI	AGCT	2 cut(s)	519, 578
AluI	AGCT	2 cut(s)	519, 578
Alw26I	GTCTC	5 cut(s)	438, 780, 1128, 1299, 1466
AlwI	GGATC	3 cut(s)	144, 733, 1284
Ama87I	CYCGRG	1 cut(s)	658
Aor13HI	TCCGGA	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	3 cut(s)	195, 1361, 1496
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	1224, 1257
AsuHPI	GGTGA	8 cut(s)	335, 480, 674, 756, 873, 1068, 1089, 1152
AvaI	CYCGRG	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	1224, 1257
BaeGI	GKGCMC	1 cut(s)	231
BanII	GRGCYC	2 cut(s)	978, 1276
BbrPI	CACGTG	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	5 cut(s)	322, 850, 1035, 1251, 1317
BceAI	ACGGC	1 cut(s)	1105
BciT130I	CCWGG	2 cut(s)	458, 918
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	5 cut(s)	438, 780, 1128, 1299, 1466
BfaI	CTAG	4 cut(s)	173, 744, 1104, 1507
BglI	GCCNNNNNGGC	1 cut(s)	1126
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	458, 918
Bme18I	GGWCC	2 cut(s)	1224, 1257
BmeT110I	CYCGRG	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	1224, 1257
BmiI	GGNNCC	2 cut(s)	1226, 1259
BmrFI	CCNGG	2 cut(s)	458, 918
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	2 cut(s)	166, 1045
BmuI	ACTGGG	1 cut(s)	682
BpmI	CTGGAG	2 cut(s)	720, 819
BsaAI	YACGTR	2 cut(s)	94, 226
BsaBI	GATNNNNATC	3 cut(s)	309, 1216, 1288
BsaI	GGTCTC	2 cut(s)	780, 1299
BsaJI	CCNNGG	3 cut(s)	319, 657, 916
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	5 cut(s)	502, 629, 688, 737, 1150
Bse8I	GATNNNNATC	3 cut(s)	309, 1216, 1288
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	458, 918
BseDI	CCNNGG	3 cut(s)	319, 657, 916
BseGI	GGATG	6 cut(s)	10, 103, 127, 337, 1013, 1036
BseJI	GATNNNNATC	3 cut(s)	309, 1216, 1288
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	4 cut(s)	302, 534, 836, 1097
BseNI	ACTGG	5 cut(s)	502, 629, 688, 737, 1150
BseRI	GAGGAG	4 cut(s)	355, 426, 646, 693
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	3 cut(s)	209, 465, 720
BslFI	GGGAC	4 cut(s)	1009, 1070, 1210, 1243
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	5 cut(s)	438, 780, 1128, 1299, 1466
BsmBI	CGTCTC	1 cut(s)	1128
BsmFI	GGGAC	4 cut(s)	1009, 1070, 1210, 1243
Bso31I	GGTCTC	2 cut(s)	780, 1299
BsoBI	CYCGRG	1 cut(s)	658
Bsp1286I	GDGCHC	3 cut(s)	231, 978, 1276
Bsp13I	TCCGGA	1 cut(s)	208
BspCNI	CTCAG	4 cut(s)	301, 533, 835, 1096
BspEI	TCCGGA	1 cut(s)	208
BspHI	TCATGA	2 cut(s)	244, 559
BspLI	GGNNCC	2 cut(s)	1226, 1259
BspPI	GGATC	3 cut(s)	144, 733, 1284
BspQI	GCTCTTC	1 cut(s)	496
BspTNI	GGTCTC	2 cut(s)	780, 1299
BsrI	ACTGG	5 cut(s)	502, 629, 688, 737, 1150
BssECI	CCNNGG	3 cut(s)	319, 657, 916
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	2 cut(s)	458, 918
Bst4CI	ACNGT	3 cut(s)	806, 989, 1477
Bst6I	CTCTTC	1 cut(s)	496
BstBAI	YACGTR	2 cut(s)	94, 226
BstDEI	CTNAG	5 cut(s)	288, 375, 520, 822, 1083
BstEII	GGTNACC	1 cut(s)	486
BstF5I	GGATG	6 cut(s)	10, 103, 127, 337, 1013, 1036
BstMAI	GTCTC	5 cut(s)	438, 780, 1128, 1299, 1466
BstMWI	GCNNNNNNNGC	1 cut(s)	1126
BstNI	CCWGG	2 cut(s)	458, 918
BstNSI	RCATGY	1 cut(s)	901
BstPI	GGTNACC	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	456, 916
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	473
BstX2I	RGATCY	2 cut(s)	136, 1289
BstYI	RGATCY	2 cut(s)	136, 1289
BtsCI	GGATG	6 cut(s)	10, 103, 127, 337, 1013, 1036
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	3 cut(s)	622, 744, 1002
CciI	TCATGA	2 cut(s)	244, 559
Cfr13I	GGNCC	2 cut(s)	1224, 1257
Csp6I	GTAC	2 cut(s)	495, 683
CviJI	RGCY	7 cut(s)	108, 464, 519, 578, 719, 976, 1274
CviKI_1	RGCY	7 cut(s)	108, 464, 519, 578, 719, 976, 1274
CviQI	GTAC	2 cut(s)	495, 683
DdeI	CTNAG	5 cut(s)	288, 375, 520, 822, 1083
DraI	TTTAAA	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	978, 1276
Eco31I	GGTCTC	2 cut(s)	780, 1299
Eco47I	GGWCC	2 cut(s)	1224, 1257
Eco57I	CTGAAG	3 cut(s)	169, 429, 789
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	658
Eco91I	GGTNACC	1 cut(s)	486
EcoO109I	RGGNCCY	2 cut(s)	1224, 1257
EcoO65I	GGTNACC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	456, 916
EcoT14I	CCWWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	903
EcoT38I	GRGCYC	2 cut(s)	978, 1276
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	1128
FalI	AAGNNNNNCTT	6 cut(s)	1246, 1278, 1279, 1311, 1315, 1347
FaqI	GGGAC	4 cut(s)	1009, 1070, 1210, 1243
FauNDI	CATATG	1 cut(s)	847
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	6 cut(s)	17, 110, 134, 344, 1000, 1023
FriOI	GRGCYC	2 cut(s)	978, 1276
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	4 cut(s)	173, 744, 1104, 1507
GluI	GCNGC	1 cut(s)	462
GsuI	CTGGAG	2 cut(s)	720, 819
HapII	CCGG	3 cut(s)	209, 465, 720
HincII	GTYRAC	2 cut(s)	36, 1329
HindII	GTYRAC	2 cut(s)	36, 1329
HpaI	GTTAAC	1 cut(s)	1329
HpaII	CCGG	3 cut(s)	209, 465, 720
HphI	GGTGA	8 cut(s)	335, 480, 674, 756, 873, 1068, 1089, 1152
Hpy166II	GTNNAC	3 cut(s)	36, 294, 1329
Hpy8I	GTNNAC	3 cut(s)	36, 294, 1329
HpyAV	CCTTC	4 cut(s)	111, 284, 707, 764
HpyCH4III	ACNGT	3 cut(s)	806, 989, 1477
HpyCH4IV	ACGT	3 cut(s)	72, 93, 225
HpyCH4V	TGCA	7 cut(s)	62, 179, 340, 901, 982, 995, 1481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1126
HpyF3I	CTNAG	5 cut(s)	288, 375, 520, 822, 1083
HpySE526I	ACGT	3 cut(s)	72, 93, 225
Kpn2I	TCCGGA	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	1329
LguI	GCTCTTC	1 cut(s)	496
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	2 cut(s)	166, 1045
MaeI	CTAG	4 cut(s)	173, 744, 1104, 1507
MaeII	ACGT	3 cut(s)	72, 93, 225
MaeIII	GTNAC	5 cut(s)	89, 486, 528, 739, 1068
MboII	GAAGA	8 cut(s)	422, 513, 543, 600, 659, 723, 810, 870
MflI	RGATCY	2 cut(s)	136, 1289
MhlI	GDGCHC	3 cut(s)	231, 978, 1276
MluCI	AATT	9 cut(s)	195, 349, 421, 543, 701, 729, 759, 1361, 1496
MlyI	GAGTC	4 cut(s)	280, 440, 647, 1076
Mph1103I	ATGCAT	1 cut(s)	903
MroI	TCCGGA	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	5 cut(s)	54, 357, 629, 1328, 1428
MslI	CAYNNNNRTG	2 cut(s)	249, 1377
MspI	CCGG	3 cut(s)	209, 465, 720
MspR9I	CCNGG	2 cut(s)	458, 918
MvaI	CCWGG	2 cut(s)	458, 918
MwoI	GCNNNNNNNGC	1 cut(s)	1126
NdeI	CATATG	1 cut(s)	847
NlaIV	GGNNCC	2 cut(s)	1226, 1259
NmeAIII	GCCGAG	2 cut(s)	1105, 1147
NmuCI	GTSAC	3 cut(s)	486, 739, 1068
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	1 cut(s)	901
PagI	TCATGA	2 cut(s)	244, 559
PciSI	GCTCTTC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	4 cut(s)	280, 439, 647, 1075
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	4 cut(s)	280, 439, 647, 1075
Ppu21I	YACGTR	2 cut(s)	94, 226
PpuMI	RGGWCCY	2 cut(s)	1224, 1257
Psp1406I	AACGTT	1 cut(s)	72
Psp5II	RGGWCCY	2 cut(s)	1224, 1257
Psp6I	CCWGG	2 cut(s)	456, 916
PspCI	CACGTG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	486
PspGI	CCWGG	2 cut(s)	456, 916
PspN4I	GGNNCC	2 cut(s)	1226, 1259
PspPI	GGNCC	2 cut(s)	1224, 1257
PspPPI	RGGWCCY	2 cut(s)	1224, 1257
PsuI	RGATCY	2 cut(s)	136, 1289
PsyI	GACNNNGTC	1 cut(s)	289
RsaI	GTAC	2 cut(s)	496, 684
RsaNI	GTAC	2 cut(s)	495, 683
RseI	CAYNNNNRTG	2 cut(s)	249, 1377
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	5 cut(s)	54, 357, 629, 1328, 1428
SatI	GCNGC	1 cut(s)	462
Sau96I	GGNCC	2 cut(s)	1224, 1257
SchI	GAGTC	4 cut(s)	280, 440, 647, 1076
ScrFI	CCNGG	2 cut(s)	458, 918
SduI	GDGCHC	3 cut(s)	231, 978, 1276
SfaNI	GCATC	2 cut(s)	166, 1045
SinI	GGWCC	2 cut(s)	1224, 1257
SmiMI	CAYNNNNRTG	2 cut(s)	249, 1377
Sse9I	AATT	9 cut(s)	195, 349, 421, 543, 701, 729, 759, 1361, 1496
SspMI	CTAG	4 cut(s)	173, 744, 1104, 1507
StyD4I	CCNGG	2 cut(s)	456, 916
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	806, 989, 1477
TaiI	ACGT	3 cut(s)	75, 96, 228
TaqI	TCGA	2 cut(s)	390, 1319
TasI	AATT	9 cut(s)	195, 349, 421, 543, 701, 729, 759, 1361, 1496
Tru1I	TTAA	5 cut(s)	54, 357, 629, 1328, 1428
Tru9I	TTAA	5 cut(s)	54, 357, 629, 1328, 1428
TscAI	CASTG	3 cut(s)	629, 744, 1002
TseFI	GTSAC	3 cut(s)	486, 739, 1068
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	3 cut(s)	486, 739, 1068
TspDTI	ATGAA	6 cut(s)	74, 114, 411, 548, 576, 864
TspRI	CASTG	3 cut(s)	629, 744, 1002
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	1224, 1257
XapI	RAATTY	3 cut(s)	195, 1361, 1496
XceI	RCATGY	1 cut(s)	901
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	4 cut(s)	173, 744, 1104, 1507
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.