Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005908

Physical Location & Seq

Genomic Coordinates Forward (+)

17364520 .. 17367713

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0180600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGATTAACTTATTGTGCTTGCTCATCAGTTTCTCAAGCTTATGGACCAGTCATGTTGCAGCAGCACTGTTCATTGGAGACACGCTTAATCCAGGGGAGACCCTCAATTCCTCGAGCTTTATGGTCTCCGCTTCGGGGGAGTTTACGTTGGGTTTCAACTCCGGCTACCTCATTCTGAGGTGCAAGAAGTATACGGTTTGGGTTGCCAACCTGCACACTCCGATTTCAAACCCTTCGTCGGCGCTTCTCAACTTGGACAAGAACAAAACTGTCCTGCAAATTACCTTGAAAGGCAAGAATCCCATCGTTCTTTACTCCTCTTCTTATGATAATACTCATAATAGTACCAATAATGTTGTGTCTACCCTGTTAGATTCTGGCAATTTAGTCCTACGAGAGGTGAATCAGGACGTTTCAAACTCTCCGTTGTGGCAAAGCTTTGATAGTCCTAATGTGGCTCTTAGGCCGGGGATGAAATTAGGTTTTAATGCTGGTCTAAGTATAACTAGCAACAGTATGTCGATTTGGAGTTGGCAGGAAAATCAGAACAGCCCGGGGCCAGGGTCTTTCAGCCTTTATTGGGATTCAGGCCAATTGCAAGTTAGAAGAAACGGGGATCTTTGGTGGACTAGCGAAACATTGAGAAGTGGAAGATACGAGAATGCTAATTTCCGTGATAAATCCAAGGTCTACAATTTTAGCGTGCTTTCATATGAGAATGGAGACTACTTCAGTTACACTGTCGTTGGTGATCCAAATGGCAGATCAGCCTGGGTGCTAGACACAGGTGGGGAGCTTTATGATGTTAACTATAACATTTCTATTGGGTCAGCAGGTGACTGTGATGGCTATAATTATGACACCACCTATGGCTATGACTACGGCTATGACTCCGTTGGTGGGACGTGCCAGAGATGGAGTGGCCGGGCCACTCTTTATTGTCCTGTGCCAACATCCTCTGGTGCATTTATTCAGCAGACAGAAAGGCACTCCTTTAGACCAATCAGTATGAACAAGTCTATCAATTCAACATGGGAGGAGACAAATTCAAGTCGATATGGGATTTATGAATGTATGGCTACTTGTTGGATGGATTGTGACTGCCTTGGCTTCGAATTTCTCTTTCATAATCAGACTGGATGTCGATTTTGGAGTGTAAAGTATTCTCAGGTCCTTGAAGATCCGGATAGTTCTGCAACTAAATATATTATACCAGGACTAGTCCCTACGTATAAACCGCAATATCGAAGAAACATAATTGATGCATCACATAAGTGGATATGGATTGGTATTGCTATTGCGGCTGTTCTTCTGGCGCTGGTGCTTTGCAGCATCTGCTACCTAATACGAAAAAGAAAACTTGCAGGTGAGAACCAAACAAACATCCAGGATATGCTGAACATCATGAAATCTAATAGACCTACTGATGCTAATGGGCTTCAAAATGATGGAAAGAGGGGACAAGATTTAAGTGTATTTAGTTATGCATCTATTATAGCTGCCACTTGCAACTTCTCTAATGAAAATAAGCTCGGAGAAGGGGGTTTTGGACCTGTTTATAAGGGGAAATTGGTGACTGGACAAGAAGTAGCAGTGAAAAGGCTTTCAAAACGTTCAGGGCAGGGACTATATGAGTTTAAGAATGAATTGATACTTATATATGAACTCCAGCATACAAACCTTGTTCAGCTGTTTGGATTTTGCATTCATGGTGAAGAGAGGATGTTGATATACGAGTACATGCCAAACAAAAGCTTGGACTACTTTTTATTTGATTCAACTAGATGCCAGCAGCAGTTAGACTGGAACAACCGTTTCAGCATAATTGAAGGAATTGCTCAAGGTTTACTTTACTTGCACAAATATTCCAGAATGAAAGTAATTCATAGAGATTTGAAAGCAAGTAATGTTCTACTTGATGAAAGCATGAACCCCAAAATTTCCGATTTTGGAATGGCAAGGATTTTCACGAATGATGAACAAGAAGCAAATACTATGAAGATTGTTGGGACACGTGGATATATGTCCCCTGAGTATATTATGGGGGGAAAATTTTCCATAAAATCTGATGTCTATAGTTTCGGTGTGTTGATGCTTGAAATCCTAAGTGGTAGAAGAAACAACAGCTTCTACAATGATGATCGCGCCCTCAATTTAGTTGGTTATGCATGGGTGTTATGGAAAGAAGGTGCAGGACTAGAACTAATGGATCCAACACTTGGCGATTCATGTGATAAAGATCATTTGTTGAGGTGCATCCATGTTGGTTTGCTTTGCGTAGAGGAAAATGCAGCCAGTCGACCAAAGATGTTAGATGTGATATCTATGCTGACTAATGAAAGCATGTCACTGCCAGTACCTACAAAACCAGCATTTTGTACAGAAAGAAATGTCATCACAACTACTGTAGGTGGAAACGGACCGGAAGTGGTGGTATCGGTAAATGGTATCTCCAATTCTGATTTTGATGGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

825

Amino Acids

92.4

Weight (kDa)

5.93

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	65 - 178	5e-18	D-mannose binding lectin
Pkinase	PF00069	506 - 706	2.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	508 - 707	8.1e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005908)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720 FvH4_3g22720
malus_domestica	MD03G1200600.v1.1
prunus_persica	Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1 Prupe.4G213700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039641
rosa_laevigata	RLG00000033933
rosa_multiflora	Rmu_ssc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_1G00041570
rosa_rugosa	Rorug05G0180400 Rorug05G0180500 Rorug05G0180600 Rorug05G0180700 Rorug05G0180800
rosa_samantha	Rh5AG267600 Rh5BG271900 Rh5CG304500 Rh5DG279600
rosa_wichuraiana	Rw5G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1560
AarI	CACCTGC	2 cut(s)	824, 1355
Acc36I	ACCTGC	3 cut(s)	219, 824, 1355
AccB7I	CCANNNNNTGG	1 cut(s)	2219
AccI	GTMKAC	4 cut(s)	191, 362, 690, 2299
AccII	CGCG	1 cut(s)	2145
AccIII	TCCGGA	1 cut(s)	1183
AciI	CCGC	3 cut(s)	129, 1238, 1301
AclI	AACGTT	1 cut(s)	1612
AclWI	GGATC	5 cut(s)	624, 746, 1175, 2204, 2217
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	4 cut(s)	1045, 1115, 1938, 2051
AcuI	CTGAAG	1 cut(s)	715
AcvI	CACGTG	1 cut(s)	2015
AfaI	GTAC	4 cut(s)	346, 1739, 2358, 2380
AfiI	CCNNNNNNNGG	7 cut(s)	135, 238, 397, 560, 580, 900, 2219
AflIII	ACRYGT	1 cut(s)	2012
AhdI	GACNNNNNGTC	1 cut(s)	1140
AhlI	ACTAGT	1 cut(s)	1219
AjiI	CACGTC	1 cut(s)	906
AjnI	CCWGG	5 cut(s)	91, 559, 770, 1213, 1386
AjuI	GAANNNNNNNTTGG	2 cut(s)	1530, 1562
AleI	CACNNNNGTG	1 cut(s)	1273
AluBI	AGCT	9 cut(s)	39, 117, 438, 796, 1499, 1531, 1690, 1755, 2127
AluI	AGCT	9 cut(s)	39, 117, 438, 796, 1499, 1531, 1690, 1755, 2127
Alw26I	GTCTC	5 cut(s)	72, 92, 130, 717, 1034
AlwI	GGATC	5 cut(s)	624, 746, 1175, 2204, 2217
AlwNI	CAGNNNCTG	1 cut(s)	1335
Ama87I	CYCGRG	2 cut(s)	112, 553
Aor13HI	TCCGGA	1 cut(s)	1183
AoxI	GGCC	5 cut(s)	464, 557, 589, 922, 927
ApeKI	GCWGC	6 cut(s)	59, 62, 1329, 1499, 1792, 2291
ApoI	RAATTY	4 cut(s)	1045, 1115, 1938, 2051
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	2053
AspLEI	GCGC	3 cut(s)	244, 1318, 2147
AspS9I	GGNCC	6 cut(s)	45, 557, 927, 1171, 1550, 2420
AsuC2I	CCSGG	4 cut(s)	468, 554, 555, 926
AsuHPI	GGTGA	6 cut(s)	412, 761, 848, 1379, 1585, 1724
AsuII	TTCGAA	1 cut(s)	1113
AvaI	CYCGRG	2 cut(s)	112, 553
AvaII	GGWCC	4 cut(s)	45, 1171, 1550, 2420
BamHI	GGATCC	1 cut(s)	2209
BbrPI	CACGTG	1 cut(s)	2015
BbvI	GCAGC	6 cut(s)	71, 74, 1341, 1486, 1804, 2303
BccI	CCATC	6 cut(s)	311, 839, 909, 1084, 1442, 2462
BceAI	ACGGC	1 cut(s)	898
BciT130I	CCWGG	5 cut(s)	93, 561, 772, 1215, 1388
BcnI	CCSGG	4 cut(s)	468, 554, 555, 926
BcoDI	GTCTC	5 cut(s)	72, 92, 130, 717, 1034
BcuI	ACTAGT	1 cut(s)	1219
BfaI	CTAG	6 cut(s)	507, 630, 779, 1220, 1782, 2198
BfmI	CTRYAG	2 cut(s)	2074, 2406
BfoI	RGCGCY	2 cut(s)	245, 1319
BfuAI	ACCTGC	3 cut(s)	219, 824, 1355
BisI	GCNGC	7 cut(s)	60, 63, 1302, 1330, 1500, 1793, 2292
BlsI	GCNGC	7 cut(s)	61, 64, 1303, 1331, 1501, 1794, 2293
Bme1390I	CCNGG	9 cut(s)	93, 468, 554, 555, 561, 772, 926, 1215, 1388
Bme18I	GGWCC	4 cut(s)	45, 1171, 1550, 2420
BmeRI	GACNNNNNGTC	1 cut(s)	1140
BmeT110I	CYCGRG	2 cut(s)	112, 553
BmgBI	CACGTC	1 cut(s)	906
BmgT120I	GGNCC	6 cut(s)	45, 557, 927, 1171, 1550, 2420
BmiI	GGNNCC	2 cut(s)	558, 2211
BmrFI	CCNGG	9 cut(s)	93, 468, 554, 555, 561, 772, 926, 1215, 1388
BmsI	GCATC	8 cut(s)	1252, 1274, 1341, 1417, 1496, 1775, 2082, 2265
BpmI	CTGGAG	1 cut(s)	1652
Bpu14I	TTCGAA	1 cut(s)	1113
BpuEI	CTTGAG	2 cut(s)	19, 1824
BpuMI	CCSGG	4 cut(s)	468, 554, 555, 926
BsaAI	YACGTR	2 cut(s)	1230, 2015
BsaBI	GATNNNNATC	1 cut(s)	2238
BsaI	GGTCTC	2 cut(s)	92, 130
BsaJI	CCNNGG	8 cut(s)	92, 467, 553, 554, 560, 684, 771, 1105
BsaWI	WCCGGW	2 cut(s)	1183, 2422
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	7 cut(s)	135, 238, 397, 560, 580, 900, 2219
Bse1I	ACTGG	6 cut(s)	48, 1141, 1582, 1808, 2295, 2354
Bse8I	GATNNNNATC	1 cut(s)	2238
BseAI	TCCGGA	1 cut(s)	1183
BseBI	CCWGG	5 cut(s)	93, 561, 772, 1215, 1388
BseDI	CCNNGG	8 cut(s)	92, 467, 553, 554, 560, 684, 771, 1105
BseGI	GGATG	7 cut(s)	477, 953, 1095, 1145, 1383, 1728, 2256
BseJI	GATNNNNATC	1 cut(s)	2238
BseLI	CCNNNNNNNGG	7 cut(s)	135, 238, 397, 560, 580, 900, 2219
BseMII	CTCAG	3 cut(s)	167, 1181, 2022
BseNI	ACTGG	6 cut(s)	48, 1141, 1582, 1808, 2295, 2354
BseRI	GAGGAG	2 cut(s)	307, 1052
BseXI	GCAGC	6 cut(s)	71, 74, 1341, 1486, 1804, 2303
BsgI	GTGCAG	2 cut(s)	197, 2211
Bsh1236I	CGCG	1 cut(s)	2145
BshFI	GGCC	5 cut(s)	466, 559, 591, 924, 929
BsiHKCI	CYCGRG	2 cut(s)	112, 553
BsiSI	CCGG	6 cut(s)	162, 467, 554, 925, 1184, 2423
BslFI	GGGAC	6 cut(s)	916, 1208, 1473, 1638, 2011, 2023
BslI	CCNNNNNNNGG	7 cut(s)	135, 238, 397, 560, 580, 900, 2219
BsmAI	GTCTC	5 cut(s)	72, 92, 130, 717, 1034
BsmFI	GGGAC	6 cut(s)	916, 1208, 1473, 1638, 2011, 2023
BsmI	GAATGC	2 cut(s)	667, 1704
BsnI	GGCC	5 cut(s)	466, 559, 591, 924, 929
Bso31I	GGTCTC	2 cut(s)	92, 130
BsoBI	CYCGRG	2 cut(s)	112, 553
Bsp119I	TTCGAA	1 cut(s)	1113
Bsp13I	TCCGGA	1 cut(s)	1183
Bsp1407I	TGTACA	1 cut(s)	2378
Bsp143I	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
BspACI	CCGC	3 cut(s)	129, 1238, 1301
BspANI	GGCC	5 cut(s)	466, 559, 591, 924, 929
BspCNI	CTCAG	3 cut(s)	168, 1180, 2023
BspEI	TCCGGA	1 cut(s)	1183
BspFNI	CGCG	1 cut(s)	2145
BspHI	TCATGA	1 cut(s)	1404
BspLI	GGNNCC	2 cut(s)	558, 2211
BspMI	ACCTGC	3 cut(s)	219, 824, 1355
BspPI	GGATC	5 cut(s)	624, 746, 1175, 2204, 2217
BspT104I	TTCGAA	1 cut(s)	1113
BspTNI	GGTCTC	2 cut(s)	92, 130
BsrGI	TGTACA	1 cut(s)	2378
BsrI	ACTGG	6 cut(s)	48, 1141, 1582, 1808, 2295, 2354
BssECI	CCNNGG	8 cut(s)	92, 467, 553, 554, 560, 684, 771, 1105
BssMI	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
BssNAI	GTATAC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	684, 1105
Bst1107I	GTATAC	1 cut(s)	192
Bst2UI	CCWGG	5 cut(s)	93, 561, 772, 1215, 1388
Bst4CI	ACNGT	8 cut(s)	69, 196, 271, 515, 742, 842, 1814, 2407
Bst6I	CTCTTC	2 cut(s)	325, 1710
BstAPI	GCANNNNNTGC	1 cut(s)	1335
BstAUI	TGTACA	1 cut(s)	2378
BstBAI	YACGTR	2 cut(s)	1230, 2015
BstBI	TTCGAA	1 cut(s)	1113
BstC8I	GCNNGC	3 cut(s)	20, 704, 1790
BstDEI	CTNAG	6 cut(s)	176, 461, 497, 1167, 2031, 2105
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	7 cut(s)	477, 953, 1095, 1145, 1383, 1728, 2256
BstFNI	CGCG	1 cut(s)	2145
BstH2I	RGCGCY	2 cut(s)	245, 1319
BstHHI	GCGC	3 cut(s)	244, 1318, 2147
BstKTI	GATC	7 cut(s)	619, 754, 767, 1183, 2143, 2212, 2242
BstMAI	GTCTC	5 cut(s)	72, 92, 130, 717, 1034
BstMBI	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
BstMWI	GCNNNNNNNGC	2 cut(s)	1301, 1335
BstNI	CCWGG	5 cut(s)	93, 561, 772, 1215, 1388
BstNSI	RCATGY	2 cut(s)	1744, 2347
BstSCI	CCNGG	9 cut(s)	91, 466, 552, 553, 559, 770, 924, 1213, 1386
BstSFI	CTRYAG	2 cut(s)	2074, 2406
BstSNI	TACGTA	1 cut(s)	1230
BstUI	CGCG	1 cut(s)	2145
BstV1I	GCAGC	6 cut(s)	71, 74, 1341, 1486, 1804, 2303
BstX2I	RGATCY	3 cut(s)	616, 1180, 2209
BstYI	RGATCY	3 cut(s)	616, 1180, 2209
BstZ17I	GTATAC	1 cut(s)	192
BsuRI	GGCC	5 cut(s)	466, 559, 591, 924, 929
BtrI	CACGTC	1 cut(s)	906
BtsCI	GGATG	7 cut(s)	477, 953, 1095, 1145, 1383, 1728, 2256
BtsI	GCAGTG	2 cut(s)	1599, 2348
BtsIMutI	CAGTG	4 cut(s)	65, 738, 1599, 2348
BveI	ACCTGC	3 cut(s)	219, 824, 1355
Cac8I	GCNNGC	3 cut(s)	20, 704, 1790
CaiI	CAGNNNCTG	1 cut(s)	1335
CciI	TCATGA	1 cut(s)	1404
CfoI	GCGC	3 cut(s)	244, 1318, 2147
Cfr13I	GGNCC	6 cut(s)	45, 557, 927, 1171, 1550, 2420
Cfr9I	CCCGGG	1 cut(s)	553
CpoI	CGGWCCG	1 cut(s)	2420
Csp6I	GTAC	4 cut(s)	345, 1738, 2357, 2379
CspI	CGGWCCG	1 cut(s)	2420
CviQI	GTAC	4 cut(s)	345, 1738, 2357, 2379
DdeI	CTNAG	6 cut(s)	176, 461, 497, 1167, 2031, 2105
DpnI	GATC	7 cut(s)	618, 753, 766, 1182, 2142, 2211, 2241
DpnII	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
DriI	GACNNNNNGTC	1 cut(s)	1140
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	325, 1710
Eam1105I	GACNNNNNGTC	1 cut(s)	1140
EarI	CTCTTC	2 cut(s)	325, 1710
Eco105I	TACGTA	1 cut(s)	1230
Eco130I	CCWWGG	2 cut(s)	684, 1105
Eco31I	GGTCTC	2 cut(s)	92, 130
Eco32I	GATATC	1 cut(s)	2322
Eco47I	GGWCC	4 cut(s)	45, 1171, 1550, 2420
Eco57I	CTGAAG	1 cut(s)	715
Eco72I	CACGTG	1 cut(s)	2015
Eco88I	CYCGRG	2 cut(s)	112, 553
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	1171
EcoRII	CCWGG	5 cut(s)	91, 559, 770, 1213, 1386
EcoRV	GATATC	1 cut(s)	2322
EcoT14I	CCWWGG	2 cut(s)	684, 1105
EcoT22I	ATGCAT	3 cut(s)	1267, 1489, 2170
ErhI	CCWWGG	2 cut(s)	684, 1105
FalI	AAGNNNNNCTT	2 cut(s)	1833, 1865
FaqI	GGGAC	6 cut(s)	916, 1208, 1473, 1638, 2011, 2023
FauNDI	CATATG	1 cut(s)	712
FblI	GTMKAC	4 cut(s)	191, 362, 690, 2299
Fnu4HI	GCNGC	7 cut(s)	60, 63, 1302, 1330, 1500, 1793, 2292
FokI	GGATG	7 cut(s)	484, 940, 1102, 1152, 1370, 1735, 2243
Fsp4HI	GCNGC	7 cut(s)	60, 63, 1302, 1330, 1500, 1793, 2292
FspBI	CTAG	6 cut(s)	507, 630, 779, 1220, 1782, 2198
GlaI	GCGC	3 cut(s)	243, 1317, 2146
GluI	GCNGC	7 cut(s)	60, 63, 1302, 1330, 1500, 1793, 2292
GsuI	CTGGAG	1 cut(s)	1652
HaeII	RGCGCY	2 cut(s)	245, 1319
HaeIII	GGCC	5 cut(s)	466, 559, 591, 924, 929
HapII	CCGG	6 cut(s)	162, 467, 554, 925, 1184, 2423
HhaI	GCGC	3 cut(s)	244, 1318, 2147
Hin6I	GCGC	3 cut(s)	242, 1316, 2145
HinP1I	GCGC	3 cut(s)	242, 1316, 2145
HincII	GTYRAC	2 cut(s)	808, 2300
HindII	GTYRAC	2 cut(s)	808, 2300
HindIII	AAGCTT	3 cut(s)	37, 436, 1753
HinfI	GANTC	7 cut(s)	298, 374, 403, 584, 890, 1775, 2225
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	6 cut(s)	162, 467, 554, 925, 1184, 2423
HphI	GGTGA	6 cut(s)	412, 761, 848, 1379, 1585, 1724
Hpy166II	GTNNAC	8 cut(s)	144, 192, 363, 627, 691, 808, 1847, 2300
Hpy188I	TCNGA	8 cut(s)	177, 222, 546, 1134, 1535, 1945, 2068, 2461
Hpy188III	TCNNGA	5 cut(s)	407, 1184, 1405, 1869, 1969
Hpy8I	GTNNAC	8 cut(s)	144, 192, 363, 627, 691, 808, 1847, 2300
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	243, 1532, 1823, 2180
HpyCH4III	ACNGT	8 cut(s)	69, 196, 271, 515, 742, 842, 1814, 2407
HpyCH4IV	ACGT	7 cut(s)	146, 411, 905, 1229, 1612, 2014, 2473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1301, 1335
HpyF3I	CTNAG	6 cut(s)	176, 461, 497, 1167, 2031, 2105
HpySE526I	ACGT	7 cut(s)	146, 411, 905, 1229, 1612, 2014, 2473
HspAI	GCGC	3 cut(s)	242, 1316, 2145
Kpn2I	TCCGGA	1 cut(s)	1183
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
LmnI	GCTCC	1 cut(s)	793
Lsp1109I	GCAGC	6 cut(s)	71, 74, 1341, 1486, 1804, 2303
LweI	GCATC	8 cut(s)	1252, 1274, 1341, 1417, 1496, 1775, 2082, 2265
MaeI	CTAG	6 cut(s)	507, 630, 779, 1220, 1782, 2198
MaeII	ACGT	7 cut(s)	146, 411, 905, 1229, 1612, 2014, 2473
MaeIII	GTNAC	5 cut(s)	734, 836, 1097, 1573, 2346
MalI	GATC	7 cut(s)	618, 753, 766, 1182, 2142, 2211, 2241
MboI	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
MboII	GAAGA	9 cut(s)	312, 618, 663, 1190, 1260, 1301, 1727, 2011, 2127
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	3 cut(s)	616, 1180, 2209
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	1067, 2237
Mph1103I	ATGCAT	3 cut(s)	1267, 1489, 2170
MroI	TCCGGA	1 cut(s)	1183
MroXI	GAANNNNTTC	1 cut(s)	2053
MseI	TTAA	7 cut(s)	6, 87, 486, 807, 1469, 1638, 2476
MslI	CAYNNNNRTG	1 cut(s)	1273
MspA1I	CMGCKG	1 cut(s)	1690
MspI	CCGG	6 cut(s)	162, 467, 554, 925, 1184, 2423
MspR9I	CCNGG	9 cut(s)	93, 468, 554, 555, 561, 772, 926, 1215, 1388
MunI	CAATTG	1 cut(s)	593
Mva1269I	GAATGC	2 cut(s)	667, 1704
MvaI	CCWGG	5 cut(s)	93, 561, 772, 1215, 1388
MvnI	CGCG	1 cut(s)	2145
MwoI	GCNNNNNNNGC	2 cut(s)	1301, 1335
NciI	CCSGG	4 cut(s)	468, 554, 555, 926
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
NlaIV	GGNNCC	2 cut(s)	558, 2211
NmuCI	GTSAC	4 cut(s)	836, 1097, 1573, 2346
NsiI	ATGCAT	3 cut(s)	1267, 1489, 2170
NspI	RCATGY	2 cut(s)	1744, 2347
NspV	TTCGAA	1 cut(s)	1113
OliI	CACNNNNGTG	1 cut(s)	1273
PaeR7I	CTCGAG	1 cut(s)	112
PagI	TCATGA	1 cut(s)	1404
PaqCI	CACCTGC	2 cut(s)	824, 1355
PctI	GAATGC	2 cut(s)	667, 1704
PdmI	GAANNNNTTC	1 cut(s)	2053
PfeI	GAWTC	6 cut(s)	298, 374, 403, 584, 1775, 2225
PflMI	CCANNNNNTGG	1 cut(s)	2219
PfoI	TCCNGGA	1 cut(s)	1386
PkrI	GCNGC	7 cut(s)	61, 64, 1303, 1331, 1501, 1794, 2293
PleI	GAGTC	1 cut(s)	884
PmaCI	CACGTG	1 cut(s)	2015
PmlI	CACGTG	1 cut(s)	2015
PpsI	GAGTC	1 cut(s)	884
Ppu21I	YACGTR	2 cut(s)	1230, 2015
PpuMI	RGGWCCY	1 cut(s)	1171
PsiI	TTATAA	1 cut(s)	1560
Psp1406I	AACGTT	1 cut(s)	1612
Psp5II	RGGWCCY	1 cut(s)	1171
Psp6I	CCWGG	5 cut(s)	91, 559, 770, 1213, 1386
PspCI	CACGTG	1 cut(s)	2015
PspGI	CCWGG	5 cut(s)	91, 559, 770, 1213, 1386
PspN4I	GGNNCC	2 cut(s)	558, 2211
PspPI	GGNCC	6 cut(s)	45, 557, 927, 1171, 1550, 2420
PspPPI	RGGWCCY	1 cut(s)	1171
PspXI	VCTCGAGB	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	1335
PsuI	RGATCY	3 cut(s)	616, 1180, 2209
PvuII	CAGCTG	1 cut(s)	1690
RsaI	GTAC	4 cut(s)	346, 1739, 2358, 2380
RsaNI	GTAC	4 cut(s)	345, 1738, 2357, 2379
RseI	CAYNNNNRTG	1 cut(s)	1273
Rsr2I	CGGWCCG	1 cut(s)	2420
RsrII	CGGWCCG	1 cut(s)	2420
SalI	GTCGAC	1 cut(s)	2298
SaqAI	TTAA	7 cut(s)	6, 87, 486, 807, 1469, 1638, 2476
SatI	GCNGC	7 cut(s)	60, 63, 1302, 1330, 1500, 1793, 2292
Sau3AI	GATC	7 cut(s)	616, 751, 764, 1180, 2140, 2209, 2239
Sau96I	GGNCC	6 cut(s)	45, 557, 927, 1171, 1550, 2420
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	9 cut(s)	93, 468, 554, 555, 561, 772, 926, 1215, 1388
SfaNI	GCATC	8 cut(s)	1252, 1274, 1341, 1417, 1496, 1775, 2082, 2265
SfcI	CTRYAG	2 cut(s)	2074, 2406
Sfr274I	CTCGAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	1113
SinI	GGWCC	4 cut(s)	45, 1171, 1550, 2420
SlaI	CTCGAG	1 cut(s)	112
SmaI	CCCGGG	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	1273
SmlI	CTYRAG	3 cut(s)	34, 112, 1839
SmoI	CTYRAG	3 cut(s)	34, 112, 1839
SnaBI	TACGTA	1 cut(s)	1230
SpeI	ACTAGT	1 cut(s)	1219
SsiI	CCGC	3 cut(s)	129, 1238, 1301
SspI	AATATT	1 cut(s)	1865
SspMI	CTAG	6 cut(s)	507, 630, 779, 1220, 1782, 2198
StyD4I	CCNGG	9 cut(s)	91, 466, 552, 553, 559, 770, 924, 1213, 1386
StyI	CCWWGG	2 cut(s)	684, 1105
TaaI	ACNGT	8 cut(s)	69, 196, 271, 515, 742, 842, 1814, 2407
TaiI	ACGT	7 cut(s)	149, 414, 908, 1232, 1615, 2017, 2476
TaqI	TCGA	7 cut(s)	113, 521, 1054, 1113, 1144, 1246, 2299
TatI	WGTACW	2 cut(s)	1737, 2378
TauI	GCSGC	1 cut(s)	1304
TfiI	GAWTC	6 cut(s)	298, 374, 403, 584, 1775, 2225
Tru1I	TTAA	7 cut(s)	6, 87, 486, 807, 1469, 1638, 2476
Tru9I	TTAA	7 cut(s)	6, 87, 486, 807, 1469, 1638, 2476
TscAI	CASTG	4 cut(s)	72, 745, 1599, 2355
TseFI	GTSAC	4 cut(s)	836, 1097, 1573, 2346
TseI	GCWGC	6 cut(s)	59, 62, 1329, 1499, 1792, 2291
Tsp45I	GTSAC	4 cut(s)	836, 1097, 1573, 2346
TspGWI	ACGGA	4 cut(s)	414, 662, 883, 2433
TspMI	CCCGGG	1 cut(s)	553
TspRI	CASTG	4 cut(s)	72, 745, 1599, 2355
Van91I	CCANNNNNTGG	1 cut(s)	2219
VpaK11BI	GGWCC	4 cut(s)	45, 1171, 1550, 2420
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	4 cut(s)	1045, 1115, 1938, 2051
XceI	RCATGY	2 cut(s)	1744, 2347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	917
XhoI	CTCGAG	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	553
XmiI	GTMKAC	4 cut(s)	191, 362, 690, 2299
XmnI	GAANNNNTTC	1 cut(s)	2053
XspI	CTAG	6 cut(s)	507, 630, 779, 1220, 1782, 2198
Zsp2I	ATGCAT	3 cut(s)	1267, 1489, 2170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.