Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010853

Physical Location & Seq

Genomic Coordinates Forward (+)

35134177 .. 35139019

Gene Structure 4843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1266200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGAAGTTCCAGGTCGAAGACGTGACGGTCTACTTCCCGTACGACCACATATACCCGGAGCAATACGCCTACATGCTCGAGCTCAAGCGCGCCCTCGACGCCAAGGGCCACTGCCTCCTCGAGATGCCCACCGGCACCGGCAAAACCATCGCCCTCCTCTCCCTCATCACCTCCTACACTCTGTCCAAGCCCCAAAACCCCGTCAAGCTAATCTACTGCACCCGCACGGTTCACGAGATGGAGAAGACGCTCGCCGAGCTCAAGCTCCTCCACAATTACCAGGTCAAGCATCTGGGTCCGCAGGCCCAGATCTTGGCGGTGGGGCTTTCGTCGAGGAAGAATCTGTGTGTTAATCCGACGGTGTTGGCGGCGGAGAATCGGGATTCCGTGGATGCGGCGTGCCGGAAATTGACTGCCAGCTGGGTCAGGAACTTGGCGGCGGAAAACCCAAATGTGCAGACTTGTGAGTTTTTTGAGGAGTATGAGAGAGCTGGGTCTGGAGCTGTTTTGCCTCCTGGGGTTTATACATTGCAGGATTTGAGGGCGTATGGGAAGCAGAAAGGGTGGTGCCCCTACTTCTTGGCGAGGCATATGGTGCAGTTTTCGAATGTGGTGGTTTATAGTTATCAGTACATGCTTGATCCAAAAGTGGCTGGGATTATTTCCAAGGAAATGCAAAAGGAGTCTGTTGTGGTGTTTGATGAGGCTCATAACATCGATAATGTGTGTATCGAAGCGCTTAGTGTTAGCGTGAGGAGGCAGACAATTGAGGGTGCCAGGAGGAATCTCAGTAAGATGCAGCATGACATTGAAAGGTTCAAGGCCACCGATGCAGATAGATTGCGTAAAGAATACAACCGGCTAGTTGAGGGTTTGGCACAAGGAGGAAACCTACCTATCACAGATACTTGGCTTCAAAATCCTGCTCTACCTGATGATATTTTGAAGGAGGCTGTGCCTGGAAATATTCGTAAAGCAGACCATTTTGTGCATGTGTTACGAAGATTGGTCAATCATCTGGAAGGCCGTCTCGAAACTGAGAATGTTGAGAAGGAAGGCCCTGTTAGTTTTGTTGCCACTATCAGTACACAAGCTGGAATTGACCAGAAAACTCTGAAGTTTTGTTATGATCGCCTACACTCATTAATGATGACGTTAGAAATTACTGACACAGATGAATTCTTACACATTCAAACGATTTGCGACTTTGCGACACTTGTGGGGACATACACTCGTGGATTCTCTGTTATAATTGAACCATTTGATGAGAGAATGCCGCACATTCCTGATCCTGTTTTACAGCTTTGCTGTCATGATGCTTCACTTGCCATAAAGCCTGTATTTGATCGATTTCAATCAGTTGTGATTACATCTGGAACCTTGAGCCCGATTGATCTCTACCCCCGTCTTCTTAATTTCCATCCTGTCGTCAGTCGAAGTTTTACTATGTCATTAACAAGAGATTGCATATGCCCAATGGTTCTCACCCGTGGAAGTGATCAGCTTCCAGTAAGTACCAAATATGATATGAGAAGTGATCTTGGCGTAGTAAGGAACTATGGGAGGTTGCTGCTGGAGATGGTTTCTGTTGTTCCAGATGGGGTTGTATGTTTTTTTGTCAGTTACTCTTATATGGATATGATAGTCAATAGCTGGAATGAAAATGGAATTTTGAAGGAAATAATGCAGCATAAGCTTGTTTTCATTGAGACCCAAGATGTGGTAGAGACTACTTTGGCTCTTGACAATTATCGTAAGGCTTGTGATTGTGGGAGGGGTGCTGTCTTCTTGTCTGTTGCCAGGGGAAAAGTAGCTGAAGGAATAGACTTTGATCGACATTATGGACGATTGGTGATCATGTTTGGAATTCCTTTCCAGTACACATTAAGCAAGATTTTGCTTGCGCGGCTGGAATACTTGCGGGATACCTTTCAAATAAAGGAAGGAGACTTTTTGACGTTTGATGCCTTGAGACAAGCAGCTCAATGTGTAGGCCGAGTCATCCGGTCAAAAGCAGACTATGGCATGATGATTTTTGCTGACAAAAGATATAGCCGTCATGACAAGCGATCCAAATTGCCTGGATGGATACTGTCGCATTTACGTGATGCACATCTGAACTTGAGCACGGACATGGCTCTGCATATAGCACGAGAGTTCCTTAGGAAGATGGCTCAACCATATGATAAGGTTGGTGGCGGCAGCGGTAAGAAAACCCTTTTATCCCAAGAAGACTTAGAGAAGATGGGCGAAAGCATTGCTAATGATTTGCTGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

760

Amino Acids

86.18

Weight (kDa)

7.07

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	72 - 255	2.5e-51	DEAD_2
HBB	PF06777	270 - 413	4.6e-40	Helical and beta-bridge domain
Helicase_C_2	PF13307	524 - 697	2e-38	Helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03190 AT1G03190
fragaria_vesca	FvH4_2g23690
malus_domestica	MD03G1266200.v1.1 MD11G1286800.v1.1
prunus_persica	Prupe.8G242000_v2.0.a1 Prupe.8G242000_v2.0.a1
pyrus_communis	pycom03g21270
rosa_chinensis	RchiOBHm_Chr6g0291151
rosa_laevigata	RLG00000012140
rosa_multiflora	Rmu_co8311277.1_g000001 Rmu_sc0004642.1_g000023 Rmu_sc0013275.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176340
rosa_rugosa	Rorug06G0218000
rosa_samantha	Rh6AG328400 Rh6BG336000 Rh6CG342000 Rh6DG329300
rosa_wichuraiana	Rw6G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1250
AasI	GACNNNNNNGTC	1 cut(s)	26
AccB1I	GGYRCC	3 cut(s)	134, 567, 773
AccB7I	CCANNNNNTGG	2 cut(s)	313, 1720
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	2 cut(s)	90, 1906
AclWI	GGATC	3 cut(s)	635, 1283, 2064
AcsI	RAATTY	3 cut(s)	1178, 1668, 1866
AcuI	CTGAAG	2 cut(s)	1136, 1836
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	5 cut(s)	41, 632, 1087, 1516, 1880
AfeI	AGCGCT	1 cut(s)	738
AfiI	CCNNNNNNNGG	2 cut(s)	313, 1720
AgsI	TTSAA	9 cut(s)	812, 820, 917, 946, 1193, 1256, 1355, 1675, 1934
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	7 cut(s)	9, 279, 514, 776, 958, 1799, 2080
Alw21I	GWGCWC	3 cut(s)	84, 261, 2129
Alw26I	GTCTC	5 cut(s)	1034, 1703, 1721, 1941, 1966
AlwI	GGATC	3 cut(s)	635, 1283, 2064
Ama87I	CYCGRG	2 cut(s)	77, 119
Aor51HI	AGCGCT	1 cut(s)	738
AoxI	GGCC	6 cut(s)	106, 303, 822, 1024, 1057, 1993
ApeKI	GCWGC	6 cut(s)	799, 1570, 1687, 1979, 2202, 2272
ApoI	RAATTY	3 cut(s)	1178, 1668, 1866
AseI	ATTAAT	1 cut(s)	1145
AspLEI	GCGC	4 cut(s)	90, 92, 739, 1906
AspS9I	GGNCC	4 cut(s)	106, 296, 304, 1058
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	160, 1477, 1864
AsuII	TTCGAA	1 cut(s)	605
AvaI	CYCGRG	2 cut(s)	77, 119
AvaII	GGWCC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	2162
BaeGI	GKGCMC	1 cut(s)	572
BanI	GGYRCC	3 cut(s)	134, 567, 773
BanII	GRGCYC	3 cut(s)	84, 261, 1388
BauI	CACGAG	3 cut(s)	233, 1233, 2151
BbsI	GAAGAC	5 cut(s)	24, 251, 1400, 1777, 2238
Bbv12I	GWGCWC	3 cut(s)	84, 261, 2129
BbvI	GCAGC	6 cut(s)	811, 1557, 1699, 1991, 2214, 2259
BccI	CCATC	8 cut(s)	155, 232, 1428, 1573, 1592, 2079, 2164, 2239
BceAI	ACGGC	2 cut(s)	1011, 2040
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 2240, 2274
BciT130I	CCWGG	7 cut(s)	11, 281, 516, 778, 960, 1801, 2082
BciVI	GTATCC	2 cut(s)	1918, 2082
BclI	TGATCA	2 cut(s)	1498, 1854
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	5 cut(s)	1034, 1703, 1721, 1941, 1966
BfaI	CTAG	1 cut(s)	863
BfoI	RGCGCY	1 cut(s)	740
BfuI	GTATCC	2 cut(s)	1918, 2082
BglII	AGATCT	1 cut(s)	309
Bme1390I	CCNGG	8 cut(s)	11, 56, 281, 516, 778, 960, 1801, 2082
Bme18I	GGWCC	1 cut(s)	296
BmeT110I	CYCGRG	2 cut(s)	77, 119
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	106, 296, 304, 1058
BmiI	GGNNCC	5 cut(s)	136, 297, 569, 775, 1378
BmrFI	CCNGG	8 cut(s)	11, 56, 281, 516, 778, 960, 1801, 2082
BmsI	GCATC	8 cut(s)	114, 298, 382, 786, 820, 1306, 1954, 2098
BpiI	GAAGAC	5 cut(s)	24, 251, 1400, 1777, 2238
BpmI	CTGGAG	2 cut(s)	519, 1595
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	5 cut(s)	68, 245, 1402, 1990, 2143
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	2 cut(s)	717, 1348
BsaAI	YACGTR	1 cut(s)	2105
BsaBI	GATNNNNATC	2 cut(s)	1354, 2112
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	1703
BsaJI	CCNNGG	6 cut(s)	102, 387, 515, 666, 1489, 1800
BsaWI	WCCGGW	1 cut(s)	2004
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 1720
Bse118I	RCCGGY	3 cut(s)	131, 137, 858
Bse1I	ACTGG	2 cut(s)	1508, 1876
Bse21I	CCTNAGG	1 cut(s)	2162
Bse3DI	GCAATG	2 cut(s)	527, 2256
Bse8I	GATNNNNATC	2 cut(s)	1354, 2112
BseBI	CCWGG	7 cut(s)	11, 281, 516, 778, 960, 1801, 2082
BseCI	ATCGAT	2 cut(s)	717, 1348
BseDI	CCNNGG	6 cut(s)	102, 387, 515, 666, 1489, 1800
BseGI	GGATG	4 cut(s)	397, 1420, 2001, 2090
BseJI	GATNNNNATC	2 cut(s)	1354, 2112
BseLI	CCNNNNNNNGG	2 cut(s)	313, 1720
BseMI	GCAATG	2 cut(s)	527, 2256
BseMII	CTCAG	2 cut(s)	802, 1029
BseNI	ACTGG	2 cut(s)	1508, 1876
BsePI	GCGCGC	1 cut(s)	88
BseRI	GAGGAG	5 cut(s)	107, 146, 257, 491, 769
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	6 cut(s)	811, 1557, 1699, 1991, 2214, 2259
BseYI	CCCAGC	3 cut(s)	420, 491, 653
BsgI	GTGCAG	3 cut(s)	202, 476, 617
Bsh1236I	CGCG	2 cut(s)	90, 1906
BshFI	GGCC	6 cut(s)	108, 305, 824, 1026, 1059, 1995
BshNI	GGYRCC	3 cut(s)	134, 567, 773
BshVI	ATCGAT	2 cut(s)	717, 1348
BsiHKAI	GWGCWC	3 cut(s)	84, 261, 2129
BsiHKCI	CYCGRG	2 cut(s)	77, 119
BsiSI	CCGG	6 cut(s)	56, 132, 138, 403, 859, 2005
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	1237
BslI	CCNNNNNNNGG	2 cut(s)	313, 1720
BsmAI	GTCTC	5 cut(s)	1034, 1703, 1721, 1941, 1966
BsmBI	CGTCTC	1 cut(s)	1034
BsmFI	GGGAC	1 cut(s)	1237
BsmI	GAATGC	1 cut(s)	1278
BsnI	GGCC	6 cut(s)	108, 305, 824, 1026, 1059, 1995
Bso31I	GGTCTC	1 cut(s)	1703
BsoBI	CYCGRG	2 cut(s)	77, 119
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	5 cut(s)	84, 261, 572, 1388, 2129
BspANI	GGCC	6 cut(s)	108, 305, 824, 1026, 1059, 1995
BspCNI	CTCAG	2 cut(s)	801, 1030
BspDI	ATCGAT	2 cut(s)	717, 1348
BspFNI	CGCG	2 cut(s)	90, 1906
BspHI	TCATGA	2 cut(s)	1312, 2059
BspLI	GGNNCC	5 cut(s)	136, 297, 569, 775, 1378
BspPI	GGATC	3 cut(s)	635, 1283, 2064
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	3 cut(s)	134, 567, 773
BspTNI	GGTCTC	1 cut(s)	1703
BsrDI	GCAATG	2 cut(s)	527, 2256
BsrFI	RCCGGY	3 cut(s)	131, 137, 858
BsrI	ACTGG	2 cut(s)	1508, 1876
BssAI	RCCGGY	3 cut(s)	131, 137, 858
BssECI	CCNNGG	6 cut(s)	102, 387, 515, 666, 1489, 1800
BssHII	GCGCGC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	3 cut(s)	233, 1233, 2151
BssT1I	CCWWGG	2 cut(s)	102, 666
Bst2BI	CACGAG	3 cut(s)	233, 1233, 2151
Bst2UI	CCWGG	7 cut(s)	11, 281, 516, 778, 960, 1801, 2082
Bst4CI	ACNGT	4 cut(s)	28, 229, 361, 2094
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstBAI	YACGTR	1 cut(s)	2105
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	6 cut(s)	90, 252, 303, 400, 418, 1902
BstDEI	CTNAG	5 cut(s)	740, 788, 1038, 2162, 2236
BstDSI	CCRYGG	2 cut(s)	387, 1489
BstF5I	GGATG	4 cut(s)	397, 1420, 2001, 2090
BstFNI	CGCG	2 cut(s)	90, 1906
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	4 cut(s)	90, 92, 739, 1906
BstMAI	GTCTC	5 cut(s)	1034, 1703, 1721, 1941, 1966
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 256, 595, 830, 1325, 1693, 1906
BstNI	CCWGG	7 cut(s)	11, 281, 516, 778, 960, 1801, 2082
BstNSI	RCATGY	3 cut(s)	76, 637, 995
BstSCI	CCNGG	8 cut(s)	9, 54, 279, 514, 776, 958, 1799, 2080
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	2 cut(s)	90, 1906
BstV1I	GCAGC	6 cut(s)	811, 1557, 1699, 1991, 2214, 2259
BstV2I	GAAGAC	5 cut(s)	24, 251, 1400, 1777, 2238
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
Bsu15I	ATCGAT	2 cut(s)	717, 1348
Bsu36I	CCTNAGG	1 cut(s)	2162
BsuI	GTATCC	2 cut(s)	1918, 2082
BsuRI	GGCC	6 cut(s)	108, 305, 824, 1026, 1059, 1995
BsuTUI	ATCGAT	2 cut(s)	717, 1348
BtgI	CCRYGG	2 cut(s)	387, 1489
BtgZI	GCGATG	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	4 cut(s)	397, 1420, 2001, 2090
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	6 cut(s)	90, 252, 303, 400, 418, 1902
CciI	TCATGA	2 cut(s)	1312, 2059
CfoI	GCGC	4 cut(s)	90, 92, 739, 1906
Cfr10I	RCCGGY	3 cut(s)	131, 137, 858
Cfr13I	GGNCC	4 cut(s)	106, 296, 304, 1058
ClaI	ATCGAT	2 cut(s)	717, 1348
CseI	GACGC	2 cut(s)	107, 256
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	5 cut(s)	40, 631, 1086, 1515, 1879
CviAII	CATG	9 cut(s)	73, 634, 803, 992, 1313, 1858, 2026, 2060, 2134
CviQI	GTAC	5 cut(s)	40, 631, 1086, 1515, 1879
DdeI	CTNAG	5 cut(s)	740, 788, 1038, 2162, 2236
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	386, 455
Ecl136II	GAGCTC	2 cut(s)	82, 259
Eco130I	CCWWGG	2 cut(s)	102, 666
Eco24I	GRGCYC	3 cut(s)	84, 261, 1388
Eco31I	GGTCTC	1 cut(s)	1703
Eco47I	GGWCC	1 cut(s)	296
Eco47III	AGCGCT	1 cut(s)	738
Eco53kI	GAGCTC	2 cut(s)	82, 259
Eco57I	CTGAAG	2 cut(s)	1136, 1836
Eco81I	CCTNAGG	1 cut(s)	2162
Eco88I	CYCGRG	2 cut(s)	77, 119
EcoICRI	GAGCTC	2 cut(s)	82, 259
EcoO109I	RGGNCCY	1 cut(s)	1058
EcoRI	GAATTC	2 cut(s)	1178, 1866
EcoRII	CCWGG	7 cut(s)	9, 279, 514, 776, 958, 1799, 2080
EcoT14I	CCWWGG	2 cut(s)	102, 666
EcoT38I	GRGCYC	3 cut(s)	84, 261, 1388
ErhI	CCWWGG	2 cut(s)	102, 666
Esp3I	CGTCTC	1 cut(s)	1034
FaeI	CATG	9 cut(s)	76, 637, 806, 995, 1316, 1861, 2029, 2063, 2137
FaqI	GGGAC	1 cut(s)	1237
FatI	CATG	9 cut(s)	72, 633, 802, 991, 1312, 1857, 2025, 2059, 2133
FauI	CCCGC	2 cut(s)	230, 1914
FauNDI	CATATG	3 cut(s)	591, 1469, 2182
FbaI	TGATCA	2 cut(s)	1498, 1854
FblI	GTMKAC	1 cut(s)	30
FokI	GGATG	4 cut(s)	404, 1407, 1988, 2097
FriOI	GRGCYC	3 cut(s)	84, 261, 1388
FspBI	CTAG	1 cut(s)	863
GlaI	GCGC	4 cut(s)	89, 91, 738, 1905
GsaI	CCCAGC	3 cut(s)	424, 495, 657
GsuI	CTGGAG	2 cut(s)	519, 1595
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	6 cut(s)	108, 305, 824, 1026, 1059, 1995
HapII	CCGG	6 cut(s)	56, 132, 138, 403, 859, 2005
HgaI	GACGC	2 cut(s)	107, 256
HhaI	GCGC	4 cut(s)	90, 92, 739, 1906
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	9 cut(s)	76, 637, 806, 995, 1316, 1861, 2029, 2063, 2137
Hin6I	GCGC	4 cut(s)	88, 90, 737, 1904
HinP1I	GCGC	4 cut(s)	88, 90, 737, 1904
HindIII	AAGCTT	1 cut(s)	1694
HinfI	GANTC	7 cut(s)	340, 376, 383, 683, 784, 1239, 1998
HpaII	CCGG	6 cut(s)	56, 132, 138, 403, 859, 2005
HphI	GGTGA	3 cut(s)	160, 1477, 1864
Hpy166II	GTNNAC	4 cut(s)	31, 232, 1088, 1881
Hpy188I	TCNGA	3 cut(s)	357, 1116, 2118
Hpy8I	GTNNAC	4 cut(s)	31, 232, 1088, 1881
Hpy99I	CGWCG	3 cut(s)	101, 334, 361
HpyAV	CCTTC	7 cut(s)	940, 1016, 1045, 1049, 1669, 1811, 1937
HpyCH4III	ACNGT	4 cut(s)	28, 229, 361, 2094
HpyCH4IV	ACGT	4 cut(s)	21, 1154, 1958, 2104
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 256, 595, 830, 1325, 1693, 1906
HpyF3I	CTNAG	5 cut(s)	740, 788, 1038, 2162, 2236
HpySE526I	ACGT	4 cut(s)	21, 1154, 1958, 2104
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	9 cut(s)	76, 637, 806, 995, 1316, 1861, 2029, 2063, 2137
HspAI	GCGC	4 cut(s)	88, 90, 737, 1904
Ksp22I	TGATCA	2 cut(s)	1498, 1854
LmnI	GCTCC	3 cut(s)	58, 270, 500
Lsp1109I	GCAGC	6 cut(s)	811, 1557, 1699, 1991, 2214, 2259
LweI	GCATC	8 cut(s)	114, 298, 382, 786, 820, 1306, 1954, 2098
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	4 cut(s)	21, 1154, 1958, 2104
MaeIII	GTNAC	3 cut(s)	22, 996, 1622
MboII	GAAGA	9 cut(s)	29, 256, 349, 1014, 1400, 1777, 2179, 2243, 2254
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	5 cut(s)	84, 261, 572, 1388, 2129
MlyI	GAGTC	2 cut(s)	692, 2007
MmeI	TCCRAC	1 cut(s)	380
MseI	TTAA	6 cut(s)	351, 1145, 1413, 1454, 1886, 2278
MslI	CAYNNNNRTG	2 cut(s)	2103, 2132
MspA1I	CMGCKG	2 cut(s)	420, 2205
MspI	CCGG	6 cut(s)	56, 132, 138, 403, 859, 2005
MspR9I	CCNGG	8 cut(s)	11, 56, 281, 516, 778, 960, 1801, 2082
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	1278
MvaI	CCWGG	7 cut(s)	11, 281, 516, 778, 960, 1801, 2082
MvnI	CGCG	2 cut(s)	90, 1906
MwoI	GCNNNNNNNGC	7 cut(s)	98, 256, 595, 830, 1325, 1693, 1906
NciI	CCSGG	1 cut(s)	56
NdeI	CATATG	3 cut(s)	591, 1469, 2182
NlaIII	CATG	9 cut(s)	76, 637, 806, 995, 1316, 1861, 2029, 2063, 2137
NlaIV	GGNNCC	5 cut(s)	136, 297, 569, 775, 1378
NmeAIII	GCCGAG	2 cut(s)	280, 2021
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	3 cut(s)	76, 637, 995
NspV	TTCGAA	1 cut(s)	605
PaeR7I	CTCGAG	2 cut(s)	77, 119
PagI	TCATGA	2 cut(s)	1312, 2059
PauI	GCGCGC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	1278
PfeI	GAWTC	5 cut(s)	340, 376, 383, 784, 1239
Pfl23II	CGTACG	1 cut(s)	39
PflMI	CCANNNNNTGG	2 cut(s)	313, 1720
PleI	GAGTC	2 cut(s)	691, 2006
PpsI	GAGTC	2 cut(s)	691, 2006
Ppu21I	YACGTR	1 cut(s)	2105
PshBI	ATTAAT	1 cut(s)	1145
PsiI	TTATAA	1 cut(s)	1250
Psp124BI	GAGCTC	2 cut(s)	84, 261
Psp6I	CCWGG	7 cut(s)	9, 279, 514, 776, 958, 1799, 2080
PspFI	CCCAGC	3 cut(s)	420, 491, 653
PspGI	CCWGG	7 cut(s)	9, 279, 514, 776, 958, 1799, 2080
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	5 cut(s)	136, 297, 569, 775, 1378
PspPI	GGNCC	4 cut(s)	106, 296, 304, 1058
PspXI	VCTCGAGB	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	309
PteI	GCGCGC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	420
RsaI	GTAC	5 cut(s)	41, 632, 1087, 1516, 1880
RsaNI	GTAC	5 cut(s)	40, 631, 1086, 1515, 1879
RseI	CAYNNNNRTG	2 cut(s)	2103, 2132
SacI	GAGCTC	2 cut(s)	84, 261
SaqAI	TTAA	6 cut(s)	351, 1145, 1413, 1454, 1886, 2278
Sau96I	GGNCC	4 cut(s)	106, 296, 304, 1058
SchI	GAGTC	2 cut(s)	692, 2007
ScrFI	CCNGG	8 cut(s)	11, 56, 281, 516, 778, 960, 1801, 2082
SduI	GDGCHC	5 cut(s)	84, 261, 572, 1388, 2129
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	8 cut(s)	114, 298, 382, 786, 820, 1306, 1954, 2098
Sfr274I	CTCGAG	2 cut(s)	77, 119
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	1 cut(s)	296
SlaI	CTCGAG	2 cut(s)	77, 119
SmiMI	CAYNNNNRTG	2 cut(s)	2103, 2132
SmlI	CTYRAG	7 cut(s)	77, 83, 119, 260, 1381, 1969, 2122
SmoI	CTYRAG	7 cut(s)	77, 83, 119, 260, 1381, 1969, 2122
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	1 cut(s)	863
SstI	GAGCTC	2 cut(s)	84, 261
StyD4I	CCNGG	8 cut(s)	9, 54, 279, 514, 776, 958, 1799, 2080
StyI	CCWWGG	2 cut(s)	102, 666
TaaI	ACNGT	4 cut(s)	28, 229, 361, 2094
TaiI	ACGT	4 cut(s)	24, 1157, 1961, 2107
TatI	WGTACW	3 cut(s)	630, 1085, 1878
TauI	GCSGC	6 cut(s)	371, 398, 440, 1279, 1909, 2202
TfiI	GAWTC	5 cut(s)	340, 376, 383, 784, 1239
Tru1I	TTAA	6 cut(s)	351, 1145, 1413, 1454, 1886, 2278
Tru9I	TTAA	6 cut(s)	351, 1145, 1413, 1454, 1886, 2278
TscAI	CASTG	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	6 cut(s)	799, 1570, 1687, 1979, 2202, 2272
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	17, 1191, 1674, 1693
TspGWI	ACGGA	2 cut(s)	376, 2144
TspRI	CASTG	1 cut(s)	116
Van91I	CCANNNNNTGG	2 cut(s)	313, 1720
VpaK11BI	GGWCC	1 cut(s)	296
VspI	ATTAAT	1 cut(s)	1145
XapI	RAATTY	3 cut(s)	1178, 1668, 1866
XceI	RCATGY	3 cut(s)	76, 637, 995
XhoI	CTCGAG	2 cut(s)	77, 119
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.