Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010853

Physical Location & Seq

Genomic Coordinates Forward (+)

52630075 .. 52634987

Gene Structure 4913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGAAGTTCCAAATGGACGACGTCACCGTGTACTTCCCCTACGACCACATCTACCCGGAGCAATACGCCTACATGCTGGAACTGAAACGCGCCCTGGACGCGCGAGGCCACTGCCTTCTCGAAATGCCGACGGGCACCGGAAAAACCATCGCCCTCCTCTCGCTCATCACCAGCTACAGTCTCTCCAAGCCCTACAACCCCGTCAAGCTCATCTACTGCACCCGCACCGTCCACGAGATGGAGAAGACGCTCGCCGAGCTCAAGCTCCTCCATAAATACCAGGTCCAGCATCTCGGAAAACAGGCGGAGATCCTCGCCATCGGGCTCTCTAGTCGCAAGAACCTCTGCGTTAACCCTAATGTGCTTGCTGCCGAGAATCGCGACTCCGTGGACGCCGCCTGCCGCAAATTGACCGCCAGCTGGGTCCGCGCCGCCGCGATCGGGAACCCTAATGTGCCGAGCTGTGAGTTTTTTGAGCAGTTTGAGAGGGCCGGGCAAGGTATCGTCTTGCCTCCTGGGGTTTACACCTTGCAGGATTTGAGGGCGTTTGGGAAGGCCGAAGGGTGGTGCCCTTACTTTTTGGCGAGGAGAATGGTCGAGGCGGCCAATGTGGTGGTTTATAGTTATCAGTATTTGCTTGATCCCAAAGTGGCTGGGATTATATCTAAGGAGTTGCAGAAGGAGTCGGTTGTGGTGTTCGATGAGGCTCACAATATAGACAATGTGTGTATCGAGGCGCTTAGTGTTAGTGTGAGGAGGCAGACGCTTGAGGGGGCTAGAAGGAATCTCAGTAAGATGCAGCAGGATATTGAAAGGTTCAAGGCCACAGATGCAGGAAGATTGCGACAAGAATACAACCGGCTTGTTCAGGGTTTGGCACAAGGAGGAAATTTACCCATCACGGATGCTTGGCTTCAGAACCCTGCCCTACCTGACGATATTCTGAAGGAGGCTGTGCCCGGAAATATTCGCAAAGCGGACCATTTTCTGCATGTCTTACGAAGATTGGTCCAGTATCTCGAAGGGCGTCTTGAAACCGAGAACGTTGAGAAGGAGCTTCCTGTTGGCTTTGTTAACTCTATTAATACCCAAGCTGGAATTGACCAGAAAACTCTCAAGTTCTGCTATGATCGTCTGCACTCACTCATGATGACATTAGAAATCACCGACACAGACGAGTTCTTACACATCCAAACTATATGTGACTTTGCGACACTTGTGGGAACATATGCCCGTGGTTTCTCTATCATAATTGAGCCATTTGACGAGAGAATGCCACACATTCCTGATCCTGTTTTGCAGCTTAGTTGTCATGATGCTTCTCTTGCTATAAAGCCTGTATTTGATCGATTTCAATCGGTTGTGATTACATCTGGAACCTTGAGCCCGATTGATCTCTACCCCCGTCTTCTCAATTTTAACCCTGTTGTGAGTCGAAGCTTTACAATGTCACTAACGAGAGAATGCATATGCCCAATGGTTCTCACCCGGGGAAGTGATCAGCTTCCTGTAAGTACAAAATTTGATATGAGAAGTGATCTCGGAGTGGTAAGGAATTATGGGAGGCTGCTGCTGGAGATGGTTTCTGTTGTTCCAGATGGGGTCGTATGTTTTTTCGTCAGCTACTCATATATGGACGGTATAGTGAACAGTTGGAATGAAAGCGGAATATTAAAGGAAATAATGCAGCATAAGCTCGTGTTCATTGAGACCCAAGATGTGGTAGAGACAACTTTGGCTTGGACAACTACCGCAAAGCTTGCGATTGTGGGAGAGGTGCTGTCTTCTTTTCTGGGAAAAGTAGCTGAAGGAATAGACTTCGATCGTCATTATGGACGATTGGTCATCATGTACGGTGTTCCATTTCAGTACACGTTAAGCAAGATTTTGCTTGCACGGCTTGAGTACTTGAGGGAGACCTTTCAGATAAAGGAAGGAGATTTCTTGACCTTTGACGCTTTGAGACAAGCTGCCCAATGTGTCGGCCGGGTTATCCGGTCAAAAGCGGACTACGGCATGATGATTTTCGCAGATAAAAGGTATAGCCGTCATGACAAGCGGTCTAAGCTGCCAGGATGGATCCTCTCCCATCTGAGGGATGCGCACCTCAACTTGAGCACTGATATGGCTCTTCATATAGCACGAGAGTTCCTCAGAAAGATGGCCCAGCCATATGACAGGACTGGTGGCAGCAGCGGCAGGAAGACACTCCTATCCCAGGACGACTTGGAGAGGATGGGCCAAGGAATCACTTATGAAATGTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

756

Amino Acids

85.74

Weight (kDa)

6.82

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	72 - 256	1.2e-51	DEAD_2
HBB	PF06777	270 - 412	3.7e-40	Helical and beta-bridge domain
Helicase_C_2	PF13307	524 - 694	1.9e-32	Helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03190 AT1G03190
fragaria_vesca	FvH4_2g23690
malus_domestica	MD03G1266200.v1.1 MD11G1286800.v1.1
prunus_persica	Prupe.8G242000_v2.0.a1 Prupe.8G242000_v2.0.a1
pyrus_communis	pycom03g21270
rosa_chinensis	RchiOBHm_Chr6g0291151
rosa_laevigata	RLG00000012140
rosa_multiflora	Rmu_co8311277.1_g000001 Rmu_sc0004642.1_g000023 Rmu_sc0013275.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176340
rosa_rugosa	Rorug06G0218000
rosa_samantha	Rh6AG328400 Rh6BG336000 Rh6CG342000 Rh6DG329300
rosa_wichuraiana	Rw6G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc16I	TGCGCA	1 cut(s)	2103
AccB1I	GGYRCC	2 cut(s)	134, 567
AccB7I	CCANNNNNTGG	2 cut(s)	238, 1720
AccII	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
AclI	AACGTT	1 cut(s)	1044
AclWI	GGATC	5 cut(s)	304, 635, 1283, 2074, 2087
AcoI	YGGCCR	2 cut(s)	603, 1984
AcsI	RAATTY	2 cut(s)	889, 1520
AcuI	CTGAAG	3 cut(s)	899, 965, 1827
AcyI	GRCGYC	3 cut(s)	21, 393, 1027
AfaI	GTAC	5 cut(s)	32, 1516, 1853, 1871, 1907
AfiI	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 2094, 2095, 2218
AflIII	ACRYGT	1 cut(s)	1872
AgsI	TTSAA	4 cut(s)	812, 820, 1034, 1355
AhdI	GACNNNNNGTC	2 cut(s)	1841, 2059
AjnI	CCWGG	5 cut(s)	93, 279, 514, 2071, 2217
Alw21I	GWGCWC	2 cut(s)	261, 2120
Alw26I	GTCTC	5 cut(s)	185, 1703, 1721, 1910, 1957
AlwI	GGATC	5 cut(s)	304, 635, 1283, 2074, 2087
Ama87I	CYCGRG	1 cut(s)	1488
AoxI	GGCC	8 cut(s)	106, 489, 555, 603, 822, 1984, 2163, 2239
ApoI	RAATTY	2 cut(s)	889, 1520
AseI	ATTAAT	1 cut(s)	1083
AspLEI	GCGC	5 cut(s)	92, 103, 431, 739, 2104
AspS9I	GGNCC	7 cut(s)	283, 424, 489, 979, 1009, 2164, 2239
AsuC2I	CCSGG	6 cut(s)	56, 493, 960, 1489, 1490, 1988
AsuHPI	GGTGA	4 cut(s)	16, 160, 1156, 1477
AvaI	CYCGRG	1 cut(s)	1488
AvaII	GGWCC	4 cut(s)	283, 424, 979, 1009
BaeGI	GKGCMC	3 cut(s)	137, 572, 960
BamHI	GGATCC	1 cut(s)	2079
BanI	GGYRCC	2 cut(s)	134, 567
BanII	GRGCYC	3 cut(s)	261, 327, 1388
BauI	CACGAG	3 cut(s)	233, 1697, 2142
BbsI	GAAGAC	4 cut(s)	251, 1400, 1776, 2210
Bbv12I	GWGCWC	2 cut(s)	261, 2120
BceAI	ACGGC	3 cut(s)	1913, 2029, 2031
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BciT130I	CCWGG	5 cut(s)	95, 281, 516, 2073, 2219
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	6 cut(s)	56, 493, 960, 1489, 1490, 1988
BcoDI	GTCTC	5 cut(s)	185, 1703, 1721, 1910, 1957
BfaI	CTAG	2 cut(s)	330, 777
BfmI	CTRYAG	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	740
BmcAI	AGTACT	1 cut(s)	1907
Bme18I	GGWCC	4 cut(s)	283, 424, 979, 1009
BmeRI	GACNNNNNGTC	2 cut(s)	1841, 2059
BmeT110I	CYCGRG	1 cut(s)	1488
BmgT120I	GGNCC	7 cut(s)	283, 424, 489, 979, 1009, 2164, 2239
BmiI	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 2081
BmsI	GCATC	6 cut(s)	298, 786, 820, 895, 1306, 2089
BpiI	GAAGAC	4 cut(s)	251, 1400, 1776, 2210
BplI	GAGNNNNNCTC	2 cut(s)	2136, 2168
BpmI	CTGGAG	1 cut(s)	1595
BpuEI	CTTGAG	7 cut(s)	245, 788, 1100, 1402, 1922, 1930, 2134
BpuMI	CCSGG	6 cut(s)	56, 493, 960, 1489, 1490, 1988
Bsa29I	ATCGAT	1 cut(s)	1348
BsaBI	GATNNNNATC	1 cut(s)	1354
BsaHI	GRCGYC	3 cut(s)	21, 393, 1027
BsaI	GGTCTC	2 cut(s)	1703, 1910
BsaJI	CCNNGG	8 cut(s)	93, 387, 515, 1234, 1488, 1489, 2217, 2242
BsaWI	WCCGGW	2 cut(s)	137, 1995
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 2094, 2095, 2218
Bse118I	RCCGGY	1 cut(s)	858
Bse1I	ACTGG	2 cut(s)	1012, 2188
Bse8I	GATNNNNATC	1 cut(s)	1354
BseBI	CCWGG	5 cut(s)	95, 281, 516, 2073, 2219
BseCI	ATCGAT	1 cut(s)	1348
BseDI	CCNNGG	8 cut(s)	93, 387, 515, 1234, 1488, 1489, 2217, 2242
BseGI	GGATG	5 cut(s)	910, 1188, 2081, 2104, 2241
BseJI	GATNNNNATC	1 cut(s)	1354
BseLI	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 2094, 2095, 2218
BseMII	CTCAG	3 cut(s)	802, 2084, 2167
BseNI	ACTGG	2 cut(s)	1012, 2188
BseRI	GAGGAG	4 cut(s)	146, 257, 601, 769
BseSI	GKGCMC	3 cut(s)	137, 572, 960
BseX3I	CGGCCG	1 cut(s)	1984
BseYI	CCCAGC	3 cut(s)	420, 653, 2166
BsgI	GTGCAG	2 cut(s)	202, 1121
Bsh1236I	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
Bsh1285I	CGRYCG	3 cut(s)	441, 1825, 1987
BshFI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1986, 2165, 2241
BshNI	GGYRCC	2 cut(s)	134, 567
BshVI	ATCGAT	1 cut(s)	1348
BsiEI	CGRYCG	3 cut(s)	441, 1825, 1987
BsiHKAI	GWGCWC	2 cut(s)	261, 2120
BsiHKCI	CYCGRG	1 cut(s)	1488
BsiSI	CCGG	8 cut(s)	56, 138, 492, 859, 960, 1489, 1987, 1996
BslI	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 2094, 2095, 2218
BsmAI	GTCTC	5 cut(s)	185, 1703, 1721, 1910, 1957
BsmI	GAATGC	2 cut(s)	1278, 1469
BsnI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1986, 2165, 2241
Bso31I	GGTCTC	2 cut(s)	1703, 1910
BsoBI	CYCGRG	1 cut(s)	1488
Bsp1286I	GDGCHC	7 cut(s)	137, 261, 327, 572, 960, 1388, 2120
Bsp68I	TCGCGA	1 cut(s)	381
BspANI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1986, 2165, 2241
BspCNI	CTCAG	3 cut(s)	801, 2085, 2166
BspDI	ATCGAT	1 cut(s)	1348
BspFNI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
BspHI	TCATGA	3 cut(s)	1146, 1312, 2050
BspLI	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 2081
BspPI	GGATC	5 cut(s)	304, 635, 1283, 2074, 2087
BspQI	GCTCTTC	1 cut(s)	2136
BspT107I	GGYRCC	2 cut(s)	134, 567
BspTNI	GGTCTC	2 cut(s)	1703, 1910
BsrFI	RCCGGY	1 cut(s)	858
BsrI	ACTGG	2 cut(s)	1012, 2188
BssAI	RCCGGY	1 cut(s)	858
BssECI	CCNNGG	8 cut(s)	93, 387, 515, 1234, 1488, 1489, 2217, 2242
BssNI	GRCGYC	3 cut(s)	21, 393, 1027
BssSI	CACGAG	3 cut(s)	233, 1697, 2142
BssT1I	CCWWGG	1 cut(s)	2242
Bst2BI	CACGAG	3 cut(s)	233, 1697, 2142
Bst2UI	CCWGG	5 cut(s)	95, 281, 516, 2073, 2219
Bst4CI	ACNGT	6 cut(s)	28, 179, 229, 1640, 1652, 1856
Bst6I	CTCTTC	1 cut(s)	2136
BstACI	GRCGYC	3 cut(s)	21, 393, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	1760
BstC8I	GCNNGC	6 cut(s)	252, 366, 400, 418, 1761, 1893
BstDEI	CTNAG	7 cut(s)	666, 740, 788, 1304, 2064, 2093, 2153
BstDSI	CCRYGG	2 cut(s)	387, 1234
BstENI	CCTNNNNNAGG	1 cut(s)	2216
BstF5I	GGATG	5 cut(s)	910, 1188, 2081, 2104, 2241
BstFNI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	5 cut(s)	92, 103, 431, 739, 2104
BstMAI	GTCTC	5 cut(s)	185, 1703, 1721, 1910, 1957
BstMCI	CGRYCG	3 cut(s)	441, 1825, 1987
BstNI	CCWGG	5 cut(s)	95, 281, 516, 2073, 2219
BstNSI	RCATGY	2 cut(s)	76, 995
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	3 cut(s)	137, 572, 960
BstUI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
BstV2I	GAAGAC	4 cut(s)	251, 1400, 1776, 2210
BstX2I	RGATCY	2 cut(s)	309, 2079
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	309, 2079
BstZI	CGGCCG	1 cut(s)	1984
Bsu15I	ATCGAT	1 cut(s)	1348
BsuRI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1986, 2165, 2241
BsuTUI	ATCGAT	1 cut(s)	1348
BtgI	CCRYGG	2 cut(s)	387, 1234
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	910, 1188, 2081, 2104, 2241
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	109, 2118
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	6 cut(s)	252, 366, 400, 418, 1761, 1893
CciI	TCATGA	3 cut(s)	1146, 1312, 2050
CfoI	GCGC	5 cut(s)	92, 103, 431, 739, 2104
Cfr10I	RCCGGY	1 cut(s)	858
Cfr13I	GGNCC	7 cut(s)	283, 424, 489, 979, 1009, 2164, 2239
Cfr9I	CCCGGG	1 cut(s)	1488
ClaI	ATCGAT	1 cut(s)	1348
CseI	GACGC	6 cut(s)	107, 256, 401, 772, 1016, 1964
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	5 cut(s)	31, 1515, 1852, 1870, 1906
CviAII	CATG	7 cut(s)	73, 992, 1147, 1313, 1849, 2017, 2051
CviQI	GTAC	5 cut(s)	31, 1515, 1852, 1870, 1906
DdeI	CTNAG	7 cut(s)	666, 740, 788, 1304, 2064, 2093, 2153
DriI	GACNNNNNGTC	2 cut(s)	1841, 2059
EaeI	YGGCCR	2 cut(s)	603, 1984
EagI	CGGCCG	1 cut(s)	1984
Eam1104I	CTCTTC	1 cut(s)	2136
Eam1105I	GACNNNNNGTC	2 cut(s)	1841, 2059
EarI	CTCTTC	1 cut(s)	2136
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	1984
Eco130I	CCWWGG	1 cut(s)	2242
Eco24I	GRGCYC	3 cut(s)	261, 327, 1388
Eco31I	GGTCTC	2 cut(s)	1703, 1910
Eco47I	GGWCC	4 cut(s)	283, 424, 979, 1009
Eco52I	CGGCCG	1 cut(s)	1984
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	3 cut(s)	899, 965, 1827
Eco88I	CYCGRG	1 cut(s)	1488
EcoICRI	GAGCTC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	2216
EcoRII	CCWGG	5 cut(s)	93, 279, 514, 2071, 2217
EcoT14I	CCWWGG	1 cut(s)	2242
EcoT22I	ATGCAT	1 cut(s)	1469
EcoT38I	GRGCYC	3 cut(s)	261, 327, 1388
ErhI	CCWWGG	1 cut(s)	2242
FaeI	CATG	7 cut(s)	76, 995, 1150, 1316, 1852, 2020, 2054
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FatI	CATG	7 cut(s)	72, 991, 1146, 1312, 1848, 2016, 2050
FauI	CCCGC	1 cut(s)	230
FauNDI	CATATG	3 cut(s)	1228, 1469, 2173
FbaI	TGATCA	1 cut(s)	1498
FokI	GGATG	5 cut(s)	917, 1175, 2088, 2111, 2248
FriOI	GRGCYC	3 cut(s)	261, 327, 1388
FspAI	RTGCGCAY	1 cut(s)	2103
FspBI	CTAG	2 cut(s)	330, 777
FspI	TGCGCA	1 cut(s)	2103
GlaI	GCGC	5 cut(s)	91, 102, 430, 738, 2103
GsaI	CCCAGC	3 cut(s)	424, 657, 2170
GsuI	CTGGAG	1 cut(s)	1595
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1986, 2165, 2241
HapII	CCGG	8 cut(s)	56, 138, 492, 859, 960, 1489, 1987, 1996
HgaI	GACGC	6 cut(s)	107, 256, 401, 772, 1016, 1964
HhaI	GCGC	5 cut(s)	92, 103, 431, 739, 2104
Hin1I	GRCGYC	3 cut(s)	21, 393, 1027
Hin1II	CATG	7 cut(s)	76, 995, 1150, 1316, 1852, 2020, 2054
Hin6I	GCGC	5 cut(s)	90, 101, 429, 737, 2102
HinP1I	GCGC	5 cut(s)	90, 101, 429, 737, 2102
HincII	GTYRAC	2 cut(s)	352, 1075
HindII	GTYRAC	2 cut(s)	352, 1075
HindIII	AAGCTT	2 cut(s)	1438, 1757
HinfI	GANTC	6 cut(s)	376, 383, 683, 784, 1432, 2247
HpaI	GTTAAC	2 cut(s)	352, 1075
HpaII	CCGG	8 cut(s)	56, 138, 492, 859, 960, 1489, 1987, 1996
HphI	GGTGA	4 cut(s)	16, 160, 1156, 1477
Hpy166II	GTNNAC	8 cut(s)	31, 232, 352, 391, 523, 1075, 1648, 1872
Hpy188I	TCNGA	7 cut(s)	296, 918, 945, 1544, 1926, 2094, 2156
Hpy8I	GTNNAC	8 cut(s)	31, 232, 352, 391, 523, 1075, 1648, 1872
Hpy99I	CGWCG	2 cut(s)	23, 133
HpyCH4III	ACNGT	6 cut(s)	28, 179, 229, 1640, 1652, 1856
HpyCH4IV	ACGT	3 cut(s)	21, 1044, 1874
HpyF3I	CTNAG	7 cut(s)	666, 740, 788, 1304, 2064, 2093, 2153
HpySE526I	ACGT	3 cut(s)	21, 1044, 1874
Hsp92I	GRCGYC	3 cut(s)	21, 393, 1027
Hsp92II	CATG	7 cut(s)	76, 995, 1150, 1316, 1852, 2020, 2054
HspAI	GCGC	5 cut(s)	90, 101, 429, 737, 2102
Ksp22I	TGATCA	1 cut(s)	1498
KspAI	GTTAAC	2 cut(s)	352, 1075
LguI	GCTCTTC	1 cut(s)	2136
LmnI	GCTCC	3 cut(s)	58, 270, 1054
LweI	GCATC	6 cut(s)	298, 786, 820, 895, 1306, 2089
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	2 cut(s)	330, 777
MaeII	ACGT	3 cut(s)	21, 1044, 1874
MaeIII	GTNAC	3 cut(s)	22, 1202, 1449
MboII	GAAGA	7 cut(s)	256, 849, 1014, 1400, 1776, 2123, 2215
MflI	RGATCY	2 cut(s)	309, 2079
MhlI	GDGCHC	7 cut(s)	137, 261, 327, 572, 960, 1388, 2120
MluCI	AATT	7 cut(s)	407, 889, 1098, 1251, 1414, 1520, 1555
MlyI	GAGTC	3 cut(s)	377, 692, 1441
MmeI	TCCRAC	1 cut(s)	1634
Mph1103I	ATGCAT	1 cut(s)	1469
MseI	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1877
MslI	CAYNNNNRTG	1 cut(s)	2123
MspA1I	CMGCKG	2 cut(s)	420, 2196
MspI	CCGG	8 cut(s)	56, 138, 492, 859, 960, 1489, 1987, 1996
Mva1269I	GAATGC	2 cut(s)	1278, 1469
MvaI	CCWGG	5 cut(s)	95, 281, 516, 2073, 2219
MvnI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
NciI	CCSGG	6 cut(s)	56, 493, 960, 1489, 1490, 1988
NdeI	CATATG	3 cut(s)	1228, 1469, 2173
NlaIII	CATG	7 cut(s)	76, 995, 1150, 1316, 1852, 2020, 2054
NlaIV	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 2081
NmeAIII	GCCGAG	3 cut(s)	280, 397, 483
NmuCI	GTSAC	3 cut(s)	22, 1202, 1449
NruI	TCGCGA	1 cut(s)	381
NsbI	TGCGCA	1 cut(s)	2103
NsiI	ATGCAT	1 cut(s)	1469
NspI	RCATGY	2 cut(s)	76, 995
PagI	TCATGA	3 cut(s)	1146, 1312, 2050
PciSI	GCTCTTC	1 cut(s)	2136
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	1278, 1469
PfeI	GAWTC	3 cut(s)	376, 784, 2247
PflFI	GACNNNGTC	1 cut(s)	20
PflMI	CCANNNNNTGG	2 cut(s)	238, 1720
Ple19I	CGATCG	2 cut(s)	441, 1825
PleI	GAGTC	3 cut(s)	377, 691, 1440
PpsI	GAGTC	3 cut(s)	377, 691, 1440
PshBI	ATTAAT	1 cut(s)	1083
Psp124BI	GAGCTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	1044
Psp6I	CCWGG	5 cut(s)	93, 279, 514, 2071, 2217
PspFI	CCCAGC	3 cut(s)	420, 653, 2166
PspGI	CCWGG	5 cut(s)	93, 279, 514, 2071, 2217
PspN4I	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 2081
PspPI	GGNCC	7 cut(s)	283, 424, 489, 979, 1009, 2164, 2239
PsuI	RGATCY	2 cut(s)	309, 2079
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	2 cut(s)	441, 1825
PvuII	CAGCTG	1 cut(s)	420
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	5 cut(s)	32, 1516, 1853, 1871, 1907
RsaNI	GTAC	5 cut(s)	31, 1515, 1852, 1870, 1906
RseI	CAYNNNNRTG	1 cut(s)	2123
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	2136
SaqAI	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1877
Sau96I	GGNCC	7 cut(s)	283, 424, 489, 979, 1009, 2164, 2239
ScaI	AGTACT	1 cut(s)	1907
SchI	GAGTC	3 cut(s)	377, 692, 1441
SduI	GDGCHC	7 cut(s)	137, 261, 327, 572, 960, 1388, 2120
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	6 cut(s)	298, 786, 820, 895, 1306, 2089
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	4 cut(s)	283, 424, 979, 1009
SmaI	CCCGGG	1 cut(s)	1490
SmiMI	CAYNNNNRTG	1 cut(s)	2123
SmlI	CTYRAG	7 cut(s)	260, 767, 1115, 1381, 1901, 1909, 2113
SmoI	CTYRAG	7 cut(s)	260, 767, 1115, 1381, 1901, 1909, 2113
Sse9I	AATT	7 cut(s)	407, 889, 1098, 1251, 1414, 1520, 1555
SspI	AATATT	2 cut(s)	967, 1671
SspMI	CTAG	2 cut(s)	330, 777
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	2242
TaaI	ACNGT	6 cut(s)	28, 179, 229, 1640, 1652, 1856
TaiI	ACGT	3 cut(s)	24, 1047, 1877
TaqI	TCGA	8 cut(s)	120, 597, 699, 732, 1020, 1348, 1435, 1821
TasI	AATT	7 cut(s)	407, 889, 1098, 1251, 1414, 1520, 1555
TatI	WGTACW	4 cut(s)	30, 1514, 1869, 1905
TauI	GCSGC	6 cut(s)	398, 405, 434, 437, 605, 2199
TfiI	GAWTC	3 cut(s)	376, 784, 2247
Tru1I	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1877
Tru9I	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1877
TscAI	CASTG	2 cut(s)	116, 2125
TseFI	GTSAC	3 cut(s)	22, 1202, 1449
Tsp45I	GTSAC	3 cut(s)	22, 1202, 1449
TspDTI	ATGAA	5 cut(s)	17, 1674, 1693, 2123, 2271
TspGWI	ACGGA	2 cut(s)	376, 917
TspMI	CCCGGG	1 cut(s)	1488
TspRI	CASTG	2 cut(s)	116, 2125
Tth111I	GACNNNGTC	1 cut(s)	20
Van91I	CCANNNNNTGG	2 cut(s)	238, 1720
VpaK11BI	GGWCC	4 cut(s)	283, 424, 979, 1009
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	1 cut(s)	2216
XapI	RAATTY	2 cut(s)	889, 1520
XceI	RCATGY	2 cut(s)	76, 995
XmaI	CCCGGG	1 cut(s)	1488
XspI	CTAG	2 cut(s)	330, 777
ZraI	GACGTC	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	1907
Zsp2I	ATGCAT	1 cut(s)	1469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.