Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010853

Physical Location & Seq

Genomic Coordinates Reverse (-)

15683692 .. 15688616

Gene Structure 4925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGAAGTTCCAAATGGACGACGTCACCGTGTACTTCCCCTACGACCACATCTACCCGGAGCAATACGCCTACATGCTGGAACTCAAACGCGCCCTGGACGCCCGAGGCCACTGCCTCCTCGAAATGCCCACCGGCACCGGAAAAACCATCGCTCTCCTCTCACTCATCACCAGCTACACTCTCTCCAAGCCCTACAACCCCGTCAAGCTCATCTACTGCACCCGCACCGTCCACGAGATGGAGAAGACGCTCGCCGAGCTCAAGCTCCTCCATAAATACCAGGTCCAGCATCTCGGAAAACAGGCGGAGATCCTCGCCATCGGGCTCTCTAGTCGCAAGAACCTCTGCGTTAACCCTAATGTGCTTGCCGCCGAGAATCGCGACTCCGTGGACGCCGCTTGCCGCAAATTGACTGCCAGCTGGGTCCGCGCCGCCGCGATCGGGAACCCTAATGTGCCGAGCTGTGAGTTTTTTGAGCAGTTTGAGAGGGTCGGGGAAGGTACCGTCTTGCCTCCTGGGGTTTACACCTTGCAGGATTTGAGGGCGTTTGGGAAGGCCCAAGGGTGGTGCCCTTACTTTTTGGCGAGGAGAATGGTCGAGGCGGCCAATGTGGTGGTTTATAGTTATCAGTATTTGCTTGATCCCAAAGTGGCTGGGATTATATCCAAGGAGTTGCAGAAGGAGTCGGTTGTGGTGTTCGATGAGGCTCACAATATAGACAATGTGTGTATCGAGGCGCTTAGTGTTAGTGTGAGGAGGCAGACGCTTGAGGGGGCTAGAAGGAATCTCAGTAAGATGCAGCAAGATATTGAAAGGTTCAAGGCCACAGACGCAGGAAGATTGCGACAAGAATACAACCGGCTTGTTGAGGGTTTGGCACAAGGAGGAAACCTACCCATCACGGATGCTTGGCTTCAGAACCCTGCCCTACCTGATGATATTCTGAAGGAGGCTGTGCCCGGAAATATTCGCAAAGCGGACCATTTTCTGCATGTCTTACGAAGATTGGTCCAGTATCTCGAAGGGCGTCTTGAAACCGAGAATGTTGAGAAGGAGCTCCCTGTTGGCTTTGTTAACTCTATTAATACCCAAGCTGGAATTGACCAGAAAACTCTCAAGTTCTGCTATGATCGTCTACACTCACTGATGATGACATTAGAAATTACCGACACAGACGAGTTCTTACACATCCAAACTATATGCGACTTTGCGACGCTTGTGGGAACATATGCCCGTGGTTTCTCTATCATAATTGAGCCATTTGACGAGAGAATGCCACACATTCCTGATCCTGTTTTACAGCTTAGTTGTCATGATGCTTCTCTTGCTATAAAGCCTGTATTTGATCGATTTCAATCGGTTGTGATTACATCTGGAACCTTGAGCCCGATTGATCTCTACCCCCGTCTTCTCAATTTTAACCCTGTTGTGAGTCGAAGCTTTACAATGTCACTAACGAGAGAATGCATATGCCCAATGGTTCTCACCCGGGGAAGTGATCAGCTTCCTGTAAGTACGAAATTTGATATGAGAAGTGATCTTGGAGTGGTAAGGAATTATGGGAGGCTGCTGCTGGAGATGGTTTCTGTTGTTCCAGATGGGGTCGTATGTTTTTTTGTCAGCTACTCATATATGGACGGTATAGTGAACAGTTGGAATGAAAGCGGAATATTAAAGGAAATAATGCAGCATAAGCTCGTGTTCATTGAGACCCAAGATGTGGTAGAGACAACTTTGGCTTTGGACAACTACCGCAAAGCTTGCGATTGTGGGAGAGGTGCTGTCTTCTTTTCTGTAGCCAGGGGAAAAGTAGCTGAAGGAATAGACTTCGATCGTCATTATGGACGATTGGTCATCATGTACGGTGTTCCATTTCAGTACACGTTAAGCAAGATTTTGCTTGCACGGCTTGAGTACTTGAGGGAGACCTTTCAGATAAAGGAAGGAGATTTCTTGACCTTTGACGCTTTGAGACAAGCTGCCCAATGTGTCGGCCGGGTTATCCGGTCAAAAGCAGACTATGGCATGATGATTTTCGCAGATAAAAGGTATAGCCGTCATGACAAGCGGTCTAAGCTGCCAGGATGGATCCTCTCCCATCTGAGGGATGCGCACCTCAACTTGAGCACTGATATGGCTCTCCATATAGCACGAGAGTTCCTCAGAAAGATGGCCCAGCCATATGACAGGACTGGTGGCAGCAGCGGCAGGAAGACACTCCTATCCCAGGACGACTTGGAGAGGTTGGGCCAAGGAATCACTTATGAAATGTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

760

Amino Acids

86.16

Weight (kDa)

7.0

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	72 - 256	3.2e-52	DEAD_2
HBB	PF06777	270 - 412	3.7e-40	Helical and beta-bridge domain
Helicase_C_2	PF13307	524 - 697	6.7e-38	Helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03190 AT1G03190
fragaria_vesca	FvH4_2g23690
malus_domestica	MD03G1266200.v1.1 MD11G1286800.v1.1
prunus_persica	Prupe.8G242000_v2.0.a1 Prupe.8G242000_v2.0.a1
pyrus_communis	pycom03g21270
rosa_chinensis	RchiOBHm_Chr6g0291151
rosa_laevigata	RLG00000012140
rosa_multiflora	Rmu_co8311277.1_g000001 Rmu_sc0004642.1_g000023 Rmu_sc0013275.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176340
rosa_rugosa	Rorug06G0218000
rosa_samantha	Rh6AG328400 Rh6BG336000 Rh6CG342000 Rh6DG329300
rosa_wichuraiana	Rw6G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc16I	TGCGCA	1 cut(s)	2112
Acc65I	GGTACC	1 cut(s)	500
AccB1I	GGYRCC	3 cut(s)	134, 500, 567
AccB7I	CCANNNNNTGG	2 cut(s)	238, 1720
AccI	GTMKAC	1 cut(s)	1135
AccII	CGCG	4 cut(s)	90, 381, 429, 437
AclWI	GGATC	5 cut(s)	304, 635, 1283, 2083, 2096
AcoI	YGGCCR	2 cut(s)	603, 1993
AcsI	RAATTY	1 cut(s)	1520
AcuI	CTGAAG	3 cut(s)	899, 965, 1836
AcyI	GRCGYC	4 cut(s)	21, 99, 393, 1027
AfaI	GTAC	6 cut(s)	32, 502, 1516, 1862, 1880, 1916
AfiI	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1720, 2103, 2104, 2227
AflIII	ACRYGT	1 cut(s)	1881
AgsI	TTSAA	4 cut(s)	812, 820, 1034, 1355
AhdI	GACNNNNNGTC	2 cut(s)	1850, 2068
AjnI	CCWGG	6 cut(s)	93, 279, 514, 1799, 2080, 2226
Alw21I	GWGCWC	3 cut(s)	261, 1059, 2129
Alw26I	GTCTC	4 cut(s)	1703, 1721, 1919, 1966
AlwI	GGATC	5 cut(s)	304, 635, 1283, 2083, 2096
Ama87I	CYCGRG	2 cut(s)	102, 1488
AoxI	GGCC	7 cut(s)	106, 555, 603, 822, 1993, 2172, 2248
ApeKI	GCWGC	8 cut(s)	799, 1567, 1570, 1687, 1979, 2077, 2199, 2202
ApoI	RAATTY	1 cut(s)	1520
AseI	ATTAAT	1 cut(s)	1083
Asp718I	GGTACC	1 cut(s)	500
AspLEI	GCGC	4 cut(s)	92, 431, 739, 2113
AspS9I	GGNCC	7 cut(s)	283, 424, 556, 979, 1009, 2173, 2248
AsuC2I	CCSGG	5 cut(s)	56, 960, 1489, 1490, 1997
AsuHPI	GGTGA	3 cut(s)	16, 160, 1477
AvaI	CYCGRG	2 cut(s)	102, 1488
AvaII	GGWCC	4 cut(s)	283, 424, 979, 1009
BaeGI	GKGCMC	2 cut(s)	572, 960
BamHI	GGATCC	1 cut(s)	2088
BanI	GGYRCC	3 cut(s)	134, 500, 567
BanII	GRGCYC	4 cut(s)	261, 327, 1059, 1388
BauI	CACGAG	3 cut(s)	233, 1697, 2151
BbsI	GAAGAC	4 cut(s)	251, 1400, 1777, 2219
Bbv12I	GWGCWC	3 cut(s)	261, 1059, 2129
BbvI	GCAGC	8 cut(s)	811, 1554, 1557, 1699, 1966, 2064, 2211, 2214
BccI	CCATC	9 cut(s)	155, 232, 326, 905, 1573, 1592, 2079, 2106, 2164
BceAI	ACGGC	2 cut(s)	1922, 2040
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BciT130I	CCWGG	6 cut(s)	95, 281, 516, 1801, 2082, 2228
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	5 cut(s)	56, 960, 1489, 1490, 1997
BcoDI	GTCTC	4 cut(s)	1703, 1721, 1919, 1966
BfaI	CTAG	2 cut(s)	330, 777
BfmI	CTRYAG	1 cut(s)	1794
BfoI	RGCGCY	1 cut(s)	740
BmcAI	AGTACT	1 cut(s)	1916
Bme18I	GGWCC	4 cut(s)	283, 424, 979, 1009
BmeRI	GACNNNNNGTC	2 cut(s)	1850, 2068
BmeT110I	CYCGRG	2 cut(s)	102, 1488
BmgT120I	GGNCC	7 cut(s)	283, 424, 556, 979, 1009, 2173, 2248
BmiI	GGNNCC	7 cut(s)	136, 425, 446, 502, 569, 1378, 2090
BmsI	GCATC	5 cut(s)	298, 786, 895, 1306, 2098
BpiI	GAAGAC	4 cut(s)	251, 1400, 1777, 2219
BplI	GAGNNNNNCTC	2 cut(s)	2145, 2177
BpmI	CTGGAG	1 cut(s)	1595
BpuEI	CTTGAG	7 cut(s)	245, 788, 1100, 1402, 1931, 1939, 2143
BpuMI	CCSGG	5 cut(s)	56, 960, 1489, 1490, 1997
Bsa29I	ATCGAT	1 cut(s)	1348
BsaBI	GATNNNNATC	1 cut(s)	1354
BsaHI	GRCGYC	4 cut(s)	21, 99, 393, 1027
BsaI	GGTCTC	2 cut(s)	1703, 1919
BsaWI	WCCGGW	2 cut(s)	137, 2004
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1720, 2103, 2104, 2227
Bse118I	RCCGGY	2 cut(s)	131, 858
Bse1I	ACTGG	2 cut(s)	1012, 2197
Bse8I	GATNNNNATC	1 cut(s)	1354
BseBI	CCWGG	6 cut(s)	95, 281, 516, 1801, 2082, 2228
BseCI	ATCGAT	1 cut(s)	1348
BseGI	GGATG	4 cut(s)	910, 1188, 2090, 2113
BseJI	GATNNNNATC	1 cut(s)	1354
BseLI	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1720, 2103, 2104, 2227
BseMII	CTCAG	3 cut(s)	802, 2093, 2176
BseNI	ACTGG	2 cut(s)	1012, 2197
BseRI	GAGGAG	5 cut(s)	107, 146, 257, 601, 769
BseSI	GKGCMC	2 cut(s)	572, 960
BseX3I	CGGCCG	1 cut(s)	1993
BseXI	GCAGC	8 cut(s)	811, 1554, 1557, 1699, 1966, 2064, 2211, 2214
BseYI	CCCAGC	3 cut(s)	420, 653, 2175
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	4 cut(s)	90, 381, 429, 437
Bsh1285I	CGRYCG	3 cut(s)	441, 1834, 1996
BshFI	GGCC	7 cut(s)	108, 557, 605, 824, 1995, 2174, 2250
BshNI	GGYRCC	3 cut(s)	134, 500, 567
BshVI	ATCGAT	1 cut(s)	1348
BsiEI	CGRYCG	3 cut(s)	441, 1834, 1996
BsiHKAI	GWGCWC	3 cut(s)	261, 1059, 2129
BsiHKCI	CYCGRG	2 cut(s)	102, 1488
BsiSI	CCGG	8 cut(s)	56, 132, 138, 859, 960, 1489, 1996, 2005
BslI	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1720, 2103, 2104, 2227
BsmAI	GTCTC	4 cut(s)	1703, 1721, 1919, 1966
BsmI	GAATGC	2 cut(s)	1278, 1469
BsnI	GGCC	7 cut(s)	108, 557, 605, 824, 1995, 2174, 2250
Bso31I	GGTCTC	2 cut(s)	1703, 1919
BsoBI	CYCGRG	2 cut(s)	102, 1488
Bsp1286I	GDGCHC	7 cut(s)	261, 327, 572, 960, 1059, 1388, 2129
Bsp68I	TCGCGA	1 cut(s)	381
BspANI	GGCC	7 cut(s)	108, 557, 605, 824, 1995, 2174, 2250
BspCNI	CTCAG	3 cut(s)	801, 2094, 2175
BspDI	ATCGAT	1 cut(s)	1348
BspFNI	CGCG	4 cut(s)	90, 381, 429, 437
BspHI	TCATGA	2 cut(s)	1312, 2059
BspLI	GGNNCC	7 cut(s)	136, 425, 446, 502, 569, 1378, 2090
BspPI	GGATC	5 cut(s)	304, 635, 1283, 2083, 2096
BspT107I	GGYRCC	3 cut(s)	134, 500, 567
BspTNI	GGTCTC	2 cut(s)	1703, 1919
BsrFI	RCCGGY	2 cut(s)	131, 858
BsrI	ACTGG	2 cut(s)	1012, 2197
BssAI	RCCGGY	2 cut(s)	131, 858
BssNI	GRCGYC	4 cut(s)	21, 99, 393, 1027
BssSI	CACGAG	3 cut(s)	233, 1697, 2151
BssT1I	CCWWGG	3 cut(s)	559, 666, 2251
Bst2BI	CACGAG	3 cut(s)	233, 1697, 2151
Bst2UI	CCWGG	6 cut(s)	95, 281, 516, 1801, 2082, 2228
Bst4CI	ACNGT	6 cut(s)	28, 229, 505, 1640, 1652, 1865
BstACI	GRCGYC	4 cut(s)	21, 99, 393, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	1761
BstC8I	GCNNGC	6 cut(s)	252, 366, 400, 418, 1762, 1902
BstDEI	CTNAG	6 cut(s)	740, 788, 1304, 2073, 2102, 2162
BstDSI	CCRYGG	2 cut(s)	387, 1234
BstENI	CCTNNNNNAGG	1 cut(s)	2225
BstF5I	GGATG	4 cut(s)	910, 1188, 2090, 2113
BstFNI	CGCG	4 cut(s)	90, 381, 429, 437
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	4 cut(s)	92, 431, 739, 2113
BstMAI	GTCTC	4 cut(s)	1703, 1721, 1919, 1966
BstMCI	CGRYCG	3 cut(s)	441, 1834, 1996
BstNI	CCWGG	6 cut(s)	95, 281, 516, 1801, 2082, 2228
BstNSI	RCATGY	2 cut(s)	76, 995
BstSFI	CTRYAG	1 cut(s)	1794
BstSLI	GKGCMC	2 cut(s)	572, 960
BstUI	CGCG	4 cut(s)	90, 381, 429, 437
BstV1I	GCAGC	8 cut(s)	811, 1554, 1557, 1699, 1966, 2064, 2211, 2214
BstV2I	GAAGAC	4 cut(s)	251, 1400, 1777, 2219
BstX2I	RGATCY	2 cut(s)	309, 2088
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	309, 2088
BstZI	CGGCCG	1 cut(s)	1993
Bsu15I	ATCGAT	1 cut(s)	1348
BsuRI	GGCC	7 cut(s)	108, 557, 605, 824, 1995, 2174, 2250
BsuTUI	ATCGAT	1 cut(s)	1348
BtgI	CCRYGG	2 cut(s)	387, 1234
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	4 cut(s)	910, 1188, 2090, 2113
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	109, 1142, 2127
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	6 cut(s)	252, 366, 400, 418, 1762, 1902
CciI	TCATGA	2 cut(s)	1312, 2059
CfoI	GCGC	4 cut(s)	92, 431, 739, 2113
Cfr10I	RCCGGY	2 cut(s)	131, 858
Cfr13I	GGNCC	7 cut(s)	283, 424, 556, 979, 1009, 2173, 2248
Cfr9I	CCCGGG	1 cut(s)	1488
ClaI	ATCGAT	1 cut(s)	1348
CseI	GACGC	8 cut(s)	107, 256, 401, 772, 839, 1016, 1222, 1973
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	6 cut(s)	31, 501, 1515, 1861, 1879, 1915
CviAII	CATG	6 cut(s)	73, 992, 1313, 1858, 2026, 2060
CviQI	GTAC	6 cut(s)	31, 501, 1515, 1861, 1879, 1915
DdeI	CTNAG	6 cut(s)	740, 788, 1304, 2073, 2102, 2162
DriI	GACNNNNNGTC	2 cut(s)	1850, 2068
EaeI	YGGCCR	2 cut(s)	603, 1993
EagI	CGGCCG	1 cut(s)	1993
Eam1105I	GACNNNNNGTC	2 cut(s)	1850, 2068
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	2 cut(s)	259, 1057
EclXI	CGGCCG	1 cut(s)	1993
Eco130I	CCWWGG	3 cut(s)	559, 666, 2251
Eco24I	GRGCYC	4 cut(s)	261, 327, 1059, 1388
Eco31I	GGTCTC	2 cut(s)	1703, 1919
Eco47I	GGWCC	4 cut(s)	283, 424, 979, 1009
Eco52I	CGGCCG	1 cut(s)	1993
Eco53kI	GAGCTC	2 cut(s)	259, 1057
Eco57I	CTGAAG	3 cut(s)	899, 965, 1836
Eco88I	CYCGRG	2 cut(s)	102, 1488
EcoICRI	GAGCTC	2 cut(s)	259, 1057
EcoNI	CCTNNNNNAGG	1 cut(s)	2225
EcoRII	CCWGG	6 cut(s)	93, 279, 514, 1799, 2080, 2226
EcoT14I	CCWWGG	3 cut(s)	559, 666, 2251
EcoT22I	ATGCAT	1 cut(s)	1469
EcoT38I	GRGCYC	4 cut(s)	261, 327, 1059, 1388
ErhI	CCWWGG	3 cut(s)	559, 666, 2251
FaeI	CATG	6 cut(s)	76, 995, 1316, 1861, 2029, 2063
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FatI	CATG	6 cut(s)	72, 991, 1312, 1857, 2025, 2059
FauI	CCCGC	1 cut(s)	230
FauNDI	CATATG	3 cut(s)	1228, 1469, 2182
FbaI	TGATCA	1 cut(s)	1498
FblI	GTMKAC	1 cut(s)	1135
FokI	GGATG	4 cut(s)	917, 1175, 2097, 2120
FriOI	GRGCYC	4 cut(s)	261, 327, 1059, 1388
FspAI	RTGCGCAY	1 cut(s)	2112
FspBI	CTAG	2 cut(s)	330, 777
FspI	TGCGCA	1 cut(s)	2112
GlaI	GCGC	4 cut(s)	91, 430, 738, 2112
GsaI	CCCAGC	3 cut(s)	424, 657, 2179
GsuI	CTGGAG	1 cut(s)	1595
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	7 cut(s)	108, 557, 605, 824, 1995, 2174, 2250
HapII	CCGG	8 cut(s)	56, 132, 138, 859, 960, 1489, 1996, 2005
HgaI	GACGC	8 cut(s)	107, 256, 401, 772, 839, 1016, 1222, 1973
HhaI	GCGC	4 cut(s)	92, 431, 739, 2113
Hin1I	GRCGYC	4 cut(s)	21, 99, 393, 1027
Hin1II	CATG	6 cut(s)	76, 995, 1316, 1861, 2029, 2063
Hin6I	GCGC	4 cut(s)	90, 429, 737, 2111
HinP1I	GCGC	4 cut(s)	90, 429, 737, 2111
HincII	GTYRAC	2 cut(s)	352, 1075
HindII	GTYRAC	2 cut(s)	352, 1075
HindIII	AAGCTT	2 cut(s)	1438, 1758
HinfI	GANTC	6 cut(s)	376, 383, 683, 784, 1432, 2256
HpaI	GTTAAC	2 cut(s)	352, 1075
HpaII	CCGG	8 cut(s)	56, 132, 138, 859, 960, 1489, 1996, 2005
HphI	GGTGA	3 cut(s)	16, 160, 1477
Hpy166II	GTNNAC	9 cut(s)	31, 232, 352, 391, 523, 1075, 1136, 1648, 1881
Hpy188I	TCNGA	6 cut(s)	296, 918, 945, 1935, 2103, 2165
Hpy8I	GTNNAC	9 cut(s)	31, 232, 352, 391, 523, 1075, 1136, 1648, 1881
Hpy99I	CGWCG	2 cut(s)	23, 1216
HpyAV	CCTTC	9 cut(s)	491, 547, 673, 774, 940, 1016, 1045, 1811, 1937
HpyCH4III	ACNGT	6 cut(s)	28, 229, 505, 1640, 1652, 1865
HpyCH4IV	ACGT	2 cut(s)	21, 1883
HpyCH4V	TGCA	8 cut(s)	219, 532, 676, 799, 991, 1467, 1687, 1904
HpyF3I	CTNAG	6 cut(s)	740, 788, 1304, 2073, 2102, 2162
HpySE526I	ACGT	2 cut(s)	21, 1883
Hsp92I	GRCGYC	4 cut(s)	21, 99, 393, 1027
Hsp92II	CATG	6 cut(s)	76, 995, 1316, 1861, 2029, 2063
HspAI	GCGC	4 cut(s)	90, 429, 737, 2111
KpnI	GGTACC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	1498
KspAI	GTTAAC	2 cut(s)	352, 1075
LmnI	GCTCC	4 cut(s)	58, 270, 1054, 1062
Lsp1109I	GCAGC	8 cut(s)	811, 1554, 1557, 1699, 1966, 2064, 2211, 2214
LweI	GCATC	5 cut(s)	298, 786, 895, 1306, 2098
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	2 cut(s)	330, 777
MaeII	ACGT	2 cut(s)	21, 1883
MaeIII	GTNAC	2 cut(s)	22, 1449
MboII	GAAGA	6 cut(s)	256, 849, 1014, 1400, 1777, 2224
MflI	RGATCY	2 cut(s)	309, 2088
MhlI	GDGCHC	7 cut(s)	261, 327, 572, 960, 1059, 1388, 2129
MluCI	AATT	7 cut(s)	407, 1098, 1161, 1251, 1414, 1520, 1555
MlyI	GAGTC	3 cut(s)	377, 692, 1441
MmeI	TCCRAC	1 cut(s)	1634
Mph1103I	ATGCAT	1 cut(s)	1469
MseI	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
MslI	CAYNNNNRTG	1 cut(s)	2132
MspA1I	CMGCKG	2 cut(s)	420, 2205
MspI	CCGG	8 cut(s)	56, 132, 138, 859, 960, 1489, 1996, 2005
Mva1269I	GAATGC	2 cut(s)	1278, 1469
MvaI	CCWGG	6 cut(s)	95, 281, 516, 1801, 2082, 2228
MvnI	CGCG	4 cut(s)	90, 381, 429, 437
NciI	CCSGG	5 cut(s)	56, 960, 1489, 1490, 1997
NdeI	CATATG	3 cut(s)	1228, 1469, 2182
NlaIII	CATG	6 cut(s)	76, 995, 1316, 1861, 2029, 2063
NlaIV	GGNNCC	7 cut(s)	136, 425, 446, 502, 569, 1378, 2090
NmeAIII	GCCGAG	3 cut(s)	280, 397, 483
NmuCI	GTSAC	2 cut(s)	22, 1449
NruI	TCGCGA	1 cut(s)	381
NsbI	TGCGCA	1 cut(s)	2112
NsiI	ATGCAT	1 cut(s)	1469
NspI	RCATGY	2 cut(s)	76, 995
PagI	TCATGA	2 cut(s)	1312, 2059
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	1278, 1469
PfeI	GAWTC	3 cut(s)	376, 784, 2256
PflFI	GACNNNGTC	1 cut(s)	20
PflMI	CCANNNNNTGG	2 cut(s)	238, 1720
Ple19I	CGATCG	2 cut(s)	441, 1834
PleI	GAGTC	3 cut(s)	377, 691, 1440
PpsI	GAGTC	3 cut(s)	377, 691, 1440
PshBI	ATTAAT	1 cut(s)	1083
Psp124BI	GAGCTC	2 cut(s)	261, 1059
Psp6I	CCWGG	6 cut(s)	93, 279, 514, 1799, 2080, 2226
PspFI	CCCAGC	3 cut(s)	420, 653, 2175
PspGI	CCWGG	6 cut(s)	93, 279, 514, 1799, 2080, 2226
PspN4I	GGNNCC	7 cut(s)	136, 425, 446, 502, 569, 1378, 2090
PspPI	GGNCC	7 cut(s)	283, 424, 556, 979, 1009, 2173, 2248
PsuI	RGATCY	2 cut(s)	309, 2088
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	2 cut(s)	441, 1834
PvuII	CAGCTG	1 cut(s)	420
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	6 cut(s)	32, 502, 1516, 1862, 1880, 1916
RsaNI	GTAC	6 cut(s)	31, 501, 1515, 1861, 1879, 1915
RseI	CAYNNNNRTG	1 cut(s)	2132
SacI	GAGCTC	2 cut(s)	261, 1059
SaqAI	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
Sau96I	GGNCC	7 cut(s)	283, 424, 556, 979, 1009, 2173, 2248
ScaI	AGTACT	1 cut(s)	1916
SchI	GAGTC	3 cut(s)	377, 692, 1441
SduI	GDGCHC	7 cut(s)	261, 327, 572, 960, 1059, 1388, 2129
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	5 cut(s)	298, 786, 895, 1306, 2098
SfcI	CTRYAG	1 cut(s)	1794
SinI	GGWCC	4 cut(s)	283, 424, 979, 1009
SmaI	CCCGGG	1 cut(s)	1490
SmiMI	CAYNNNNRTG	1 cut(s)	2132
SmlI	CTYRAG	7 cut(s)	260, 767, 1115, 1381, 1910, 1918, 2122
SmoI	CTYRAG	7 cut(s)	260, 767, 1115, 1381, 1910, 1918, 2122
Sse9I	AATT	7 cut(s)	407, 1098, 1161, 1251, 1414, 1520, 1555
SspI	AATATT	2 cut(s)	967, 1671
SspMI	CTAG	2 cut(s)	330, 777
SstI	GAGCTC	2 cut(s)	261, 1059
StyI	CCWWGG	3 cut(s)	559, 666, 2251
TaaI	ACNGT	6 cut(s)	28, 229, 505, 1640, 1652, 1865
TaiI	ACGT	2 cut(s)	24, 1886
TaqI	TCGA	8 cut(s)	120, 597, 699, 732, 1020, 1348, 1435, 1830
TasI	AATT	7 cut(s)	407, 1098, 1161, 1251, 1414, 1520, 1555
TatI	WGTACW	3 cut(s)	30, 1878, 1914
TauI	GCSGC	7 cut(s)	371, 398, 405, 434, 437, 605, 2208
TfiI	GAWTC	3 cut(s)	376, 784, 2256
Tru1I	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
Tru9I	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
TscAI	CASTG	3 cut(s)	116, 1149, 2134
TseFI	GTSAC	2 cut(s)	22, 1449
TseI	GCWGC	8 cut(s)	799, 1567, 1570, 1687, 1979, 2077, 2199, 2202
Tsp45I	GTSAC	2 cut(s)	22, 1449
TspDTI	ATGAA	4 cut(s)	17, 1674, 1693, 2280
TspGWI	ACGGA	2 cut(s)	376, 917
TspMI	CCCGGG	1 cut(s)	1488
TspRI	CASTG	3 cut(s)	116, 1149, 2134
Tth111I	GACNNNGTC	1 cut(s)	20
Van91I	CCANNNNNTGG	2 cut(s)	238, 1720
VpaK11BI	GGWCC	4 cut(s)	283, 424, 979, 1009
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	1 cut(s)	2225
XapI	RAATTY	1 cut(s)	1520
XceI	RCATGY	2 cut(s)	76, 995
XmaI	CCCGGG	1 cut(s)	1488
XmiI	GTMKAC	1 cut(s)	1135
XspI	CTAG	2 cut(s)	330, 777
ZraI	GACGTC	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	1916
Zsp2I	ATGCAT	1 cut(s)	1469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.