Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010853

Physical Location & Seq

Genomic Coordinates Forward (+)

21578654 .. 21579971

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAGCCACCGTCCCTCTCCGTCTCAGTCAGAGCCAAAACCCAAAACCTGACAAAAACCATGAAGTTCCAGGTCGAAGACGTGACGGTCTACTTCCCGTACGACCACATATACCCGGAGCAATACGCTTACATGCTCGAGCTCAAGCGCGCCCTCGACGCCAAGGGTCACTGCCTCCTCGAGATGCCCACCGGCACCGGCAAAACCATCGCCCTTCTCTCTCTCATCACCTCCTACACTCTGTCCAAGCCCCAAAACCCCGTCAAGCTAATCTACTGCACCCGCACGGTTCACGAGATGGAGAAGACGCTCGCCGAGCTCAAGCTCCTCCACAATTACCAGGTCAAGCATCTGGGTCCGCAGGCTCAGATCTTGGCGGTGGGGCTTTCGTCGAGGAAGAATCTGTGTGTTAATCCGACGGTGTTGGCGGCGGAGAATCGGGATTCCGTGGATGCTGCGTGCCGGAAATTGACTGCCAGCTGGGTCAGGAACTTGGCGGCGGAAAACCCAAATGTGCCGACTTGTGAGTTTTTTGAGGAGTATGAGAGAGCTGGGTCTGGAGCTGTTTTGCCTCCTGGGGTTTATACATTGCAGGATTTGAGGGCGTATGGGAAGCAGAAAGGGTGGTGCCCCTACTTCTTGGCGAGGCATATGGTTCAGTTTTCGAATGTGGTGGTTTATAGTTATCAGTACATGCTTGATCCTAAAGTGGCTGGGATTATTTCCAAGGAAATGCAAAAGGAGTCTGTTGTGGTGTTTGATGAGGCTCATAACATTGATAATGTGTGCATCGAAGCGCTTAGTGTTAGCGTGAGGAGGCAGACAATTGAGGGTGCCAGGAGGAATCTCAGTAAGATGCAGCATGACATTGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

293

Amino Acids

33.03

Weight (kDa)

8.56

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03190 AT1G03190
fragaria_vesca	FvH4_2g23690
malus_domestica	MD03G1266200.v1.1 MD11G1286800.v1.1
prunus_persica	Prupe.8G242000_v2.0.a1 Prupe.8G242000_v2.0.a1
pyrus_communis	pycom03g21270
rosa_chinensis	RchiOBHm_Chr6g0291151
rosa_laevigata	RLG00000012140
rosa_multiflora	Rmu_co8311277.1_g000001 Rmu_sc0004642.1_g000023 Rmu_sc0013275.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176340
rosa_rugosa	Rorug06G0218000
rosa_samantha	Rh6AG328400 Rh6BG336000 Rh6CG342000 Rh6DG329300
rosa_wichuraiana	Rw6G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	3 cut(s)	194, 627, 833
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	150
AciI	CCGC	7 cut(s)	283, 359, 377, 428, 431, 497, 500
AclWI	GGATC	1 cut(s)	695
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	101, 692
AfeI	AGCGCT	1 cut(s)	798
AgsI	TTSAA	1 cut(s)	872
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	4 cut(s)	69, 339, 574, 836
AluBI	AGCT	7 cut(s)	142, 268, 319, 325, 480, 551, 563
AluI	AGCT	7 cut(s)	142, 268, 319, 325, 480, 551, 563
Alw21I	GWGCWC	2 cut(s)	144, 321
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	2 cut(s)	137, 179
Aor51HI	AGCGCT	1 cut(s)	798
ApeKI	GCWGC	2 cut(s)	455, 859
AspLEI	GCGC	3 cut(s)	150, 152, 799
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	665
AvaI	CYCGRG	2 cut(s)	137, 179
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	632
BanI	GGYRCC	3 cut(s)	194, 627, 833
BanII	GRGCYC	2 cut(s)	144, 321
BauI	CACGAG	1 cut(s)	293
BbsI	GAAGAC	2 cut(s)	84, 311
Bbv12I	GWGCWC	2 cut(s)	144, 321
BbvI	GCAGC	2 cut(s)	442, 871
BccI	CCATC	2 cut(s)	215, 292
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	4 cut(s)	71, 341, 576, 838
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	800
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	4 cut(s)	429, 456, 498, 860
BlsI	GCNGC	4 cut(s)	430, 457, 499, 861
Bme1390I	CCNGG	5 cut(s)	71, 116, 341, 576, 838
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	2 cut(s)	137, 179
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	5 cut(s)	6, 196, 357, 629, 835
BmrFI	CCNGG	5 cut(s)	71, 116, 341, 576, 838
BmsI	GCATC	5 cut(s)	174, 358, 442, 798, 846
BpiI	GAAGAC	2 cut(s)	84, 311
BpmI	CTGGAG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	128, 305
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	162, 447, 575, 726
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse118I	RCCGGY	2 cut(s)	191, 197
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	4 cut(s)	71, 341, 576, 838
BseDI	CCNNGG	4 cut(s)	162, 447, 575, 726
BseGI	GGATG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	3 cut(s)	39, 380, 862
BsePI	GCGCGC	1 cut(s)	148
BseRI	GAGGAG	4 cut(s)	167, 317, 551, 829
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	2 cut(s)	442, 871
BseYI	CCCAGC	3 cut(s)	480, 551, 713
BsgI	GTGCAG	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	150
BshNI	GGYRCC	3 cut(s)	194, 627, 833
BsiHKAI	GWGCWC	2 cut(s)	144, 321
BsiHKCI	CYCGRG	2 cut(s)	137, 179
BsiSI	CCGG	4 cut(s)	116, 192, 198, 463
BsiWI	CGTACG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsoBI	CYCGRG	2 cut(s)	137, 179
Bsp119I	TTCGAA	1 cut(s)	665
Bsp1286I	GDGCHC	3 cut(s)	144, 321, 632
Bsp143I	GATC	2 cut(s)	369, 700
BspACI	CCGC	7 cut(s)	283, 359, 377, 428, 431, 497, 500
BspCNI	CTCAG	3 cut(s)	38, 379, 861
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	5 cut(s)	6, 196, 357, 629, 835
BspPI	GGATC	1 cut(s)	695
BspT104I	TTCGAA	1 cut(s)	665
BspT107I	GGYRCC	3 cut(s)	194, 627, 833
BsrDI	GCAATG	1 cut(s)	587
BsrFI	RCCGGY	2 cut(s)	191, 197
BssAI	RCCGGY	2 cut(s)	191, 197
BssECI	CCNNGG	4 cut(s)	162, 447, 575, 726
BssHII	GCGCGC	1 cut(s)	148
BssMI	GATC	2 cut(s)	369, 700
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	2 cut(s)	162, 726
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	4 cut(s)	71, 341, 576, 838
Bst4CI	ACNGT	4 cut(s)	12, 88, 289, 421
BstACI	GRCGYC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	5 cut(s)	150, 312, 363, 460, 478
BstDEI	CTNAG	4 cut(s)	25, 366, 800, 848
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	3 cut(s)	150, 152, 799
BstKTI	GATC	2 cut(s)	372, 703
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	2 cut(s)	369, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 316
BstNI	CCWGG	4 cut(s)	71, 341, 576, 838
BstNSI	RCATGY	2 cut(s)	136, 697
BstSCI	CCNGG	5 cut(s)	69, 114, 339, 574, 836
BstSLI	GKGCMC	1 cut(s)	632
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	442, 871
BstV2I	GAAGAC	2 cut(s)	84, 311
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	193
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	5 cut(s)	150, 312, 363, 460, 478
CfoI	GCGC	3 cut(s)	150, 152, 799
Cfr10I	RCCGGY	2 cut(s)	191, 197
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	2 cut(s)	167, 316
CsiI	ACCWGGT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	100, 691
CviAII	CATG	4 cut(s)	61, 133, 694, 863
CviQI	GTAC	2 cut(s)	100, 691
DdeI	CTNAG	4 cut(s)	25, 366, 800, 848
DpnI	GATC	2 cut(s)	371, 702
DpnII	GATC	2 cut(s)	369, 700
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EciI	GGCGGA	2 cut(s)	446, 515
Ecl136II	GAGCTC	2 cut(s)	142, 319
Eco130I	CCWWGG	2 cut(s)	162, 726
Eco24I	GRGCYC	2 cut(s)	144, 321
Eco47I	GGWCC	1 cut(s)	356
Eco47III	AGCGCT	1 cut(s)	798
Eco53kI	GAGCTC	2 cut(s)	142, 319
Eco88I	CYCGRG	2 cut(s)	137, 179
EcoICRI	GAGCTC	2 cut(s)	142, 319
EcoRII	CCWGG	4 cut(s)	69, 339, 574, 836
EcoT14I	CCWWGG	2 cut(s)	162, 726
EcoT38I	GRGCYC	2 cut(s)	144, 321
ErhI	CCWWGG	2 cut(s)	162, 726
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	4 cut(s)	64, 136, 697, 866
FatI	CATG	4 cut(s)	60, 132, 693, 862
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	1 cut(s)	651
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	429, 456, 498, 860
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	2 cut(s)	144, 321
Fsp4HI	GCNGC	4 cut(s)	429, 456, 498, 860
GlaI	GCGC	3 cut(s)	149, 151, 798
GluI	GCNGC	4 cut(s)	429, 456, 498, 860
GsaI	CCCAGC	3 cut(s)	484, 555, 717
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	800
HapII	CCGG	4 cut(s)	116, 192, 198, 463
HgaI	GACGC	2 cut(s)	167, 316
HhaI	GCGC	3 cut(s)	150, 152, 799
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	64, 136, 697, 866
Hin6I	GCGC	3 cut(s)	148, 150, 797
HinP1I	GCGC	3 cut(s)	148, 150, 797
HinfI	GANTC	5 cut(s)	400, 436, 443, 743, 844
HpaII	CCGG	4 cut(s)	116, 192, 198, 463
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	91, 292
Hpy188I	TCNGA	3 cut(s)	32, 369, 417
Hpy188III	TCNNGA	5 cut(s)	181, 293, 440, 487, 558
Hpy8I	GTNNAC	2 cut(s)	91, 292
Hpy99I	CGWCG	3 cut(s)	161, 394, 421
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	4 cut(s)	12, 88, 289, 421
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	279, 592, 736, 789, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 316
HpyF3I	CTNAG	4 cut(s)	25, 366, 800, 848
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	64, 136, 697, 866
HspAI	GCGC	3 cut(s)	148, 150, 797
Kzo9I	GATC	2 cut(s)	369, 700
LmnI	GCTCC	4 cut(s)	4, 118, 330, 560
Lsp1109I	GCAGC	2 cut(s)	442, 871
LweI	GCATC	5 cut(s)	174, 358, 442, 798, 846
MabI	ACCWGGT	1 cut(s)	339
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	82, 167
MalI	GATC	2 cut(s)	371, 702
MboI	GATC	2 cut(s)	369, 700
MboII	GAAGA	3 cut(s)	89, 316, 409
MfeI	CAATTG	1 cut(s)	825
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	3 cut(s)	144, 321, 632
MluCI	AATT	3 cut(s)	334, 467, 825
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	440
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	4 cut(s)	116, 192, 198, 463
MspR9I	CCNGG	5 cut(s)	71, 116, 341, 576, 838
MunI	CAATTG	1 cut(s)	825
MvaI	CCWGG	4 cut(s)	71, 341, 576, 838
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	158, 316
NciI	CCSGG	1 cut(s)	116
NdeI	CATATG	1 cut(s)	651
NdeII	GATC	2 cut(s)	369, 700
NlaIII	CATG	4 cut(s)	64, 136, 697, 866
NlaIV	GGNNCC	5 cut(s)	6, 196, 357, 629, 835
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	82, 167
NspI	RCATGY	2 cut(s)	136, 697
NspV	TTCGAA	1 cut(s)	665
PaeR7I	CTCGAG	2 cut(s)	137, 179
PauI	GCGCGC	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	400, 436, 443, 844
Pfl23II	CGTACG	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	430, 457, 499, 861
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
Psp124BI	GAGCTC	2 cut(s)	144, 321
Psp6I	CCWGG	4 cut(s)	69, 339, 574, 836
PspFI	CCCAGC	3 cut(s)	480, 551, 713
PspGI	CCWGG	4 cut(s)	69, 339, 574, 836
PspLI	CGTACG	1 cut(s)	99
PspN4I	GGNNCC	5 cut(s)	6, 196, 357, 629, 835
PspPI	GGNCC	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	369
PteI	GCGCGC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	480
RsaI	GTAC	2 cut(s)	101, 692
RsaNI	GTAC	2 cut(s)	100, 691
SacI	GAGCTC	2 cut(s)	144, 321
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	4 cut(s)	429, 456, 498, 860
Sau3AI	GATC	2 cut(s)	369, 700
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	5 cut(s)	71, 116, 341, 576, 838
SduI	GDGCHC	3 cut(s)	144, 321, 632
SexAI	ACCWGGT	1 cut(s)	339
SfaNI	GCATC	5 cut(s)	174, 358, 442, 798, 846
Sfr274I	CTCGAG	2 cut(s)	137, 179
SfuI	TTCGAA	1 cut(s)	665
SinI	GGWCC	1 cut(s)	356
SlaI	CTCGAG	2 cut(s)	137, 179
SmlI	CTYRAG	4 cut(s)	137, 143, 179, 320
SmoI	CTYRAG	4 cut(s)	137, 143, 179, 320
Sse9I	AATT	3 cut(s)	334, 467, 825
SsiI	CCGC	7 cut(s)	283, 359, 377, 428, 431, 497, 500
SstI	GAGCTC	2 cut(s)	144, 321
StyD4I	CCNGG	5 cut(s)	69, 114, 339, 574, 836
StyI	CCWWGG	2 cut(s)	162, 726
TaaI	ACNGT	4 cut(s)	12, 88, 289, 421
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	7 cut(s)	75, 138, 156, 180, 392, 665, 792
TasI	AATT	3 cut(s)	334, 467, 825
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	2 cut(s)	431, 500
TfiI	GAWTC	4 cut(s)	400, 436, 443, 844
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	176
TseFI	GTSAC	2 cut(s)	82, 167
TseI	GCWGC	2 cut(s)	455, 859
Tsp45I	GTSAC	2 cut(s)	82, 167
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	2 cut(s)	10, 436
TspRI	CASTG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	356
XceI	RCATGY	2 cut(s)	136, 697
XhoI	CTCGAG	2 cut(s)	137, 179
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.