Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004642.1

Orthogroup ID

OG0010853

Physical Location & Seq

Genomic Coordinates Forward (+)

96951 .. 101664

Gene Structure 4714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004642.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

atgaagttccaaatggacgacgtcaccgtgtacttcccctacgaccacatctacccggagcaatacgcctacatgctggaactgaaacgcgccctggacgcgcgaggccactgcctcctggaaatgccgacgggcaccggaaaaaccatcgccctcctctcgctcatcaccagctacagtctctcgaagccctacaaccccgtcaagctcatctactgcacccgcaccgtccacgagatggagaagacgctcgccgagctcaagctcctccataaataccaggtccagcatctcggaaaacaggcggagatcctcgccatcgggctctctagtcgcaagaacctctgcgttaaccctaatgtgcttgccgccgagaatcgcgactccgtggacgccgcttgccgcaaattgaccgccagctgggtccgcgccgccgcgatcgggaaccctaatgtgccgagctgtgagttttttgagcagtttgagagggccgggcaaggtgtcgtcttgcctcctggggtttacaccttgcaggatttgagggcgtttggcaaggccgaagggtggtgcccttactttttggcgaggagaatggtcgaggcggccaatgtggtggtttatagttatcagtatttgcttgatcccaaagtggctgggattatatctaaggagttgcagaaggagtcggttgtggtgttcgatgaggctcacaatatagacaatgtgtgtatcgaggcgcttagtgttagtgtgaggaggcagacgcttgagggggctagaaggaatctcagtaagatgcagcaggatattgaaaggttcaaggccacagacgcaggaagattgcgacaagaatacaaccggcttgttgagggtttggcacaaggaggaaacctacccatcacggatgcttggcttcagaaccctgccctacctgacgatattctgaaggaggctgtgcccggaaatattcgcaaagcagaccattttctgcatgtcttacgaagattggtccagtatctcgaagggcgtcttgaaaccgagaacgttgagaaggagcttcctgttggctttgttaactcgattaatacccaagctggaattgaccagaaaactctcaagttctgctatgatcgtctacactcactcatgatgacattagaaattaccgacacagacgagttcttacacatccaaactatatgcgactttgcgacgcttgtgggaacatatgcccgtggtttctctatcataattgagccatttgacgagagaatgccacacattcctgatcctgttttgcagcttagttgtcatgatgcttctcttgctataaagcctgtatttgatcgatttcaatcggttgtgattacatctggaaccttgagcccgattgatctctacccccgtcttctcaattttaaccctgttgtgagtcgaagctttacaatgtcactaacgagagaatgcatatgcccaatggttctcacccggggaagtgatcagcttcctgtaagtacaaaatttgatatgagaagtgatctcggagtggtaaggaattatgggaggctgctgctggagatggtttctgttgttccagatggggtcgtatgttttttcgtcagctactcatatatggacggtatagtgaacagttggaatgaaagtggaatattaaaggaaataatgcagcataagcttgtgttcattgagacccaagatgtggtagagacaactttggctttggacaactaccgcaaagcttgcgattgtgggagaggtgctgtcttcttttctgtggccaggggaaaagtagctgaaggaatagacttcgatcgtcattatggacgattggtcatcatgtacggcgttccatttcagtacacgttaagcaagtatagccgtcatgacaagcggtctaagctgccaggatggatcctctcccatctgagggatgcgcacctcaacttgagcactgatatggctcttcatatagcacgagagttcctcagaaagatggcccagccatatgacaggactggtggcagcagcggcaggaagacactcctatcccaggacgacttggagaggatgggccaaggaatcacttatgaaatgttgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

707

Amino Acids

80.08

Weight (kDa)

6.67

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03190 AT1G03190
fragaria_vesca	FvH4_2g23690
malus_domestica	MD03G1266200.v1.1 MD11G1286800.v1.1
prunus_persica	Prupe.8G242000_v2.0.a1 Prupe.8G242000_v2.0.a1
pyrus_communis	pycom03g21270
rosa_chinensis	RchiOBHm_Chr6g0291151
rosa_laevigata	RLG00000012140
rosa_multiflora	Rmu_co8311277.1_g000001 Rmu_sc0004642.1_g000023 Rmu_sc0013275.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176340
rosa_rugosa	Rorug06G0218000
rosa_samantha	Rh6AG328400 Rh6BG336000 Rh6CG342000 Rh6DG329300
rosa_wichuraiana	Rw6G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc16I	TGCGCA	1 cut(s)	1956
AccB1I	GGYRCC	2 cut(s)	134, 567
AccB7I	CCANNNNNTGG	2 cut(s)	238, 1720
AccI	GTMKAC	1 cut(s)	1135
AccII	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
AclI	AACGTT	1 cut(s)	1044
AclWI	GGATC	5 cut(s)	304, 635, 1283, 1927, 1940
AcoI	YGGCCR	2 cut(s)	603, 1797
AcsI	RAATTY	1 cut(s)	1520
AcuI	CTGAAG	3 cut(s)	899, 965, 1836
AcyI	GRCGYC	3 cut(s)	21, 393, 1027
AfaI	GTAC	4 cut(s)	32, 1516, 1862, 1880
AfiI	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 1947, 1948, 2071
AflIII	ACRYGT	1 cut(s)	1881
AgsI	TTSAA	4 cut(s)	812, 820, 1034, 1355
AhdI	GACNNNNNGTC	2 cut(s)	1850, 1912
AjnI	CCWGG	7 cut(s)	93, 117, 279, 514, 1799, 1924, 2070
Alw21I	GWGCWC	2 cut(s)	261, 1973
Alw26I	GTCTC	3 cut(s)	185, 1703, 1721
AlwI	GGATC	5 cut(s)	304, 635, 1283, 1927, 1940
Ama87I	CYCGRG	1 cut(s)	1488
AoxI	GGCC	8 cut(s)	106, 489, 555, 603, 822, 1797, 2016, 2092
ApeKI	GCWGC	8 cut(s)	799, 1300, 1567, 1570, 1687, 1921, 2043, 2046
ApoI	RAATTY	1 cut(s)	1520
AseI	ATTAAT	1 cut(s)	1083
AspLEI	GCGC	5 cut(s)	92, 103, 431, 739, 1957
AspS9I	GGNCC	6 cut(s)	283, 424, 489, 1009, 2017, 2092
AsuC2I	CCSGG	5 cut(s)	56, 493, 960, 1489, 1490
AsuHPI	GGTGA	3 cut(s)	16, 160, 1477
AvaI	CYCGRG	1 cut(s)	1488
AvaII	GGWCC	3 cut(s)	283, 424, 1009
BaeGI	GKGCMC	3 cut(s)	137, 572, 960
BalI	TGGCCA	1 cut(s)	1799
BamHI	GGATCC	1 cut(s)	1932
BanI	GGYRCC	2 cut(s)	134, 567
BanII	GRGCYC	3 cut(s)	261, 327, 1388
BauI	CACGAG	2 cut(s)	233, 1995
BbsI	GAAGAC	4 cut(s)	251, 1400, 1777, 2063
Bbv12I	GWGCWC	2 cut(s)	261, 1973
BbvI	GCAGC	8 cut(s)	811, 1312, 1554, 1557, 1699, 1908, 2055, 2058
BceAI	ACGGC	2 cut(s)	1879, 1884
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BciT130I	CCWGG	7 cut(s)	95, 119, 281, 516, 1801, 1926, 2072
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	5 cut(s)	56, 493, 960, 1489, 1490
BcoDI	GTCTC	3 cut(s)	185, 1703, 1721
BfaI	CTAG	2 cut(s)	330, 777
BfmI	CTRYAG	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	740
Bme18I	GGWCC	3 cut(s)	283, 424, 1009
BmeRI	GACNNNNNGTC	2 cut(s)	1850, 1912
BmeT110I	CYCGRG	1 cut(s)	1488
BmgT120I	GGNCC	6 cut(s)	283, 424, 489, 1009, 2017, 2092
BmiI	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 1934
BmsI	GCATC	5 cut(s)	298, 786, 895, 1306, 1942
BpiI	GAAGAC	4 cut(s)	251, 1400, 1777, 2063
BplI	GAGNNNNNCTC	2 cut(s)	1989, 2021
BpmI	CTGGAG	1 cut(s)	1595
BpuEI	CTTGAG	5 cut(s)	245, 788, 1100, 1402, 1987
BpuMI	CCSGG	5 cut(s)	56, 493, 960, 1489, 1490
Bsa29I	ATCGAT	1 cut(s)	1348
BsaBI	GATNNNNATC	1 cut(s)	1354
BsaHI	GRCGYC	3 cut(s)	21, 393, 1027
BsaI	GGTCTC	1 cut(s)	1703
BsaJI	CCNNGG	9 cut(s)	93, 387, 515, 1234, 1488, 1489, 1800, 2070, 2095
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 1947, 1948, 2071
Bse118I	RCCGGY	1 cut(s)	858
Bse1I	ACTGG	2 cut(s)	1012, 2041
Bse8I	GATNNNNATC	1 cut(s)	1354
BseBI	CCWGG	7 cut(s)	95, 119, 281, 516, 1801, 1926, 2072
BseCI	ATCGAT	1 cut(s)	1348
BseDI	CCNNGG	9 cut(s)	93, 387, 515, 1234, 1488, 1489, 1800, 2070, 2095
BseGI	GGATG	5 cut(s)	910, 1188, 1934, 1957, 2094
BseJI	GATNNNNATC	1 cut(s)	1354
BseLI	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 1947, 1948, 2071
BseMII	CTCAG	3 cut(s)	802, 1937, 2020
BseNI	ACTGG	2 cut(s)	1012, 2041
BseRI	GAGGAG	4 cut(s)	146, 257, 601, 769
BseSI	GKGCMC	3 cut(s)	137, 572, 960
BseXI	GCAGC	8 cut(s)	811, 1312, 1554, 1557, 1699, 1908, 2055, 2058
BseYI	CCCAGC	3 cut(s)	420, 653, 2019
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
Bsh1285I	CGRYCG	2 cut(s)	441, 1834
BshFI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1799, 2018, 2094
BshNI	GGYRCC	2 cut(s)	134, 567
BshVI	ATCGAT	1 cut(s)	1348
BsiEI	CGRYCG	2 cut(s)	441, 1834
BsiHKAI	GWGCWC	2 cut(s)	261, 1973
BsiHKCI	CYCGRG	1 cut(s)	1488
BsiSI	CCGG	6 cut(s)	56, 138, 492, 859, 960, 1489
BslI	CCNNNNNNNGG	8 cut(s)	238, 420, 441, 564, 1720, 1947, 1948, 2071
BsmAI	GTCTC	3 cut(s)	185, 1703, 1721
BsmI	GAATGC	2 cut(s)	1278, 1469
BsnI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1799, 2018, 2094
Bso31I	GGTCTC	1 cut(s)	1703
BsoBI	CYCGRG	1 cut(s)	1488
Bsp1286I	GDGCHC	7 cut(s)	137, 261, 327, 572, 960, 1388, 1973
Bsp68I	TCGCGA	1 cut(s)	381
BspANI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1799, 2018, 2094
BspCNI	CTCAG	3 cut(s)	801, 1938, 2019
BspDI	ATCGAT	1 cut(s)	1348
BspFNI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
BspHI	TCATGA	3 cut(s)	1146, 1312, 1903
BspLI	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 1934
BspPI	GGATC	5 cut(s)	304, 635, 1283, 1927, 1940
BspQI	GCTCTTC	1 cut(s)	1989
BspT107I	GGYRCC	2 cut(s)	134, 567
BspTNI	GGTCTC	1 cut(s)	1703
BsrFI	RCCGGY	1 cut(s)	858
BsrI	ACTGG	2 cut(s)	1012, 2041
BssAI	RCCGGY	1 cut(s)	858
BssECI	CCNNGG	9 cut(s)	93, 387, 515, 1234, 1488, 1489, 1800, 2070, 2095
BssNI	GRCGYC	3 cut(s)	21, 393, 1027
BssSI	CACGAG	2 cut(s)	233, 1995
BssT1I	CCWWGG	1 cut(s)	2095
Bst2BI	CACGAG	2 cut(s)	233, 1995
Bst2UI	CCWGG	7 cut(s)	95, 119, 281, 516, 1801, 1926, 2072
Bst4CI	ACNGT	5 cut(s)	28, 179, 229, 1640, 1652
Bst6I	CTCTTC	1 cut(s)	1989
BstACI	GRCGYC	3 cut(s)	21, 393, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	1761
BstC8I	GCNNGC	5 cut(s)	252, 366, 400, 418, 1762
BstDEI	CTNAG	7 cut(s)	666, 740, 788, 1304, 1917, 1946, 2006
BstDSI	CCRYGG	2 cut(s)	387, 1234
BstENI	CCTNNNNNAGG	1 cut(s)	2069
BstF5I	GGATG	5 cut(s)	910, 1188, 1934, 1957, 2094
BstFNI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	5 cut(s)	92, 103, 431, 739, 1957
BstMAI	GTCTC	3 cut(s)	185, 1703, 1721
BstMCI	CGRYCG	2 cut(s)	441, 1834
BstNI	CCWGG	7 cut(s)	95, 119, 281, 516, 1801, 1926, 2072
BstNSI	RCATGY	2 cut(s)	76, 995
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	3 cut(s)	137, 572, 960
BstUI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
BstV1I	GCAGC	8 cut(s)	811, 1312, 1554, 1557, 1699, 1908, 2055, 2058
BstV2I	GAAGAC	4 cut(s)	251, 1400, 1777, 2063
BstX2I	RGATCY	2 cut(s)	309, 1932
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	309, 1932
Bsu15I	ATCGAT	1 cut(s)	1348
BsuRI	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1799, 2018, 2094
BsuTUI	ATCGAT	1 cut(s)	1348
BtgI	CCRYGG	2 cut(s)	387, 1234
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	910, 1188, 1934, 1957, 2094
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	109, 1971
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	5 cut(s)	252, 366, 400, 418, 1762
CciI	TCATGA	3 cut(s)	1146, 1312, 1903
CfoI	GCGC	5 cut(s)	92, 103, 431, 739, 1957
Cfr10I	RCCGGY	1 cut(s)	858
Cfr13I	GGNCC	6 cut(s)	283, 424, 489, 1009, 2017, 2092
Cfr9I	CCCGGG	1 cut(s)	1488
ClaI	ATCGAT	1 cut(s)	1348
CseI	GACGC	7 cut(s)	107, 256, 401, 772, 839, 1016, 1222
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	4 cut(s)	31, 1515, 1861, 1879
CviAII	CATG	6 cut(s)	73, 992, 1147, 1313, 1858, 1904
CviQI	GTAC	4 cut(s)	31, 1515, 1861, 1879
DdeI	CTNAG	7 cut(s)	666, 740, 788, 1304, 1917, 1946, 2006
DriI	GACNNNNNGTC	2 cut(s)	1850, 1912
EaeI	YGGCCR	2 cut(s)	603, 1797
Eam1104I	CTCTTC	1 cut(s)	1989
Eam1105I	GACNNNNNGTC	2 cut(s)	1850, 1912
EarI	CTCTTC	1 cut(s)	1989
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	2095
Eco24I	GRGCYC	3 cut(s)	261, 327, 1388
Eco31I	GGTCTC	1 cut(s)	1703
Eco47I	GGWCC	3 cut(s)	283, 424, 1009
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	3 cut(s)	899, 965, 1836
Eco88I	CYCGRG	1 cut(s)	1488
EcoICRI	GAGCTC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	2069
EcoRII	CCWGG	7 cut(s)	93, 117, 279, 514, 1799, 1924, 2070
EcoT14I	CCWWGG	1 cut(s)	2095
EcoT22I	ATGCAT	1 cut(s)	1469
EcoT38I	GRGCYC	3 cut(s)	261, 327, 1388
ErhI	CCWWGG	1 cut(s)	2095
FaeI	CATG	6 cut(s)	76, 995, 1150, 1316, 1861, 1907
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FatI	CATG	6 cut(s)	72, 991, 1146, 1312, 1857, 1903
FauI	CCCGC	1 cut(s)	230
FauNDI	CATATG	3 cut(s)	1228, 1469, 2026
FbaI	TGATCA	1 cut(s)	1498
FblI	GTMKAC	1 cut(s)	1135
FokI	GGATG	5 cut(s)	917, 1175, 1941, 1964, 2101
FriOI	GRGCYC	3 cut(s)	261, 327, 1388
FspAI	RTGCGCAY	1 cut(s)	1956
FspBI	CTAG	2 cut(s)	330, 777
FspI	TGCGCA	1 cut(s)	1956
GlaI	GCGC	5 cut(s)	91, 102, 430, 738, 1956
GsaI	CCCAGC	3 cut(s)	424, 657, 2023
GsuI	CTGGAG	1 cut(s)	1595
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	8 cut(s)	108, 491, 557, 605, 824, 1799, 2018, 2094
HapII	CCGG	6 cut(s)	56, 138, 492, 859, 960, 1489
HgaI	GACGC	7 cut(s)	107, 256, 401, 772, 839, 1016, 1222
HhaI	GCGC	5 cut(s)	92, 103, 431, 739, 1957
Hin1I	GRCGYC	3 cut(s)	21, 393, 1027
Hin1II	CATG	6 cut(s)	76, 995, 1150, 1316, 1861, 1907
Hin6I	GCGC	5 cut(s)	90, 101, 429, 737, 1955
HinP1I	GCGC	5 cut(s)	90, 101, 429, 737, 1955
HincII	GTYRAC	2 cut(s)	352, 1075
HindII	GTYRAC	2 cut(s)	352, 1075
HindIII	AAGCTT	3 cut(s)	1438, 1694, 1758
HinfI	GANTC	6 cut(s)	376, 383, 683, 784, 1432, 2100
HpaI	GTTAAC	2 cut(s)	352, 1075
HpaII	CCGG	6 cut(s)	56, 138, 492, 859, 960, 1489
HphI	GGTGA	3 cut(s)	16, 160, 1477
Hpy166II	GTNNAC	9 cut(s)	31, 232, 352, 391, 523, 1075, 1136, 1648, 1881
Hpy188I	TCNGA	6 cut(s)	296, 918, 945, 1544, 1947, 2009
Hpy8I	GTNNAC	9 cut(s)	31, 232, 352, 391, 523, 1075, 1136, 1648, 1881
Hpy99I	CGWCG	3 cut(s)	23, 133, 1216
HpyAV	CCTTC	7 cut(s)	554, 673, 774, 940, 1016, 1045, 1811
HpyCH4III	ACNGT	5 cut(s)	28, 179, 229, 1640, 1652
HpyCH4IV	ACGT	3 cut(s)	21, 1044, 1883
HpyCH4V	TGCA	8 cut(s)	219, 532, 676, 799, 991, 1300, 1467, 1687
HpyF3I	CTNAG	7 cut(s)	666, 740, 788, 1304, 1917, 1946, 2006
HpySE526I	ACGT	3 cut(s)	21, 1044, 1883
Hsp92I	GRCGYC	3 cut(s)	21, 393, 1027
Hsp92II	CATG	6 cut(s)	76, 995, 1150, 1316, 1861, 1907
HspAI	GCGC	5 cut(s)	90, 101, 429, 737, 1955
Ksp22I	TGATCA	1 cut(s)	1498
KspAI	GTTAAC	2 cut(s)	352, 1075
LguI	GCTCTTC	1 cut(s)	1989
LmnI	GCTCC	3 cut(s)	58, 270, 1054
Lsp1109I	GCAGC	8 cut(s)	811, 1312, 1554, 1557, 1699, 1908, 2055, 2058
LweI	GCATC	5 cut(s)	298, 786, 895, 1306, 1942
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	2 cut(s)	330, 777
MaeII	ACGT	3 cut(s)	21, 1044, 1883
MaeIII	GTNAC	2 cut(s)	22, 1449
MboII	GAAGA	7 cut(s)	256, 849, 1014, 1400, 1777, 1976, 2068
MflI	RGATCY	2 cut(s)	309, 1932
MhlI	GDGCHC	7 cut(s)	137, 261, 327, 572, 960, 1388, 1973
MlsI	TGGCCA	1 cut(s)	1799
MluCI	AATT	7 cut(s)	407, 1098, 1161, 1251, 1414, 1520, 1555
MluNI	TGGCCA	1 cut(s)	1799
MlyI	GAGTC	3 cut(s)	377, 692, 1441
MmeI	TCCRAC	1 cut(s)	1634
Mox20I	TGGCCA	1 cut(s)	1799
Mph1103I	ATGCAT	1 cut(s)	1469
MscI	TGGCCA	1 cut(s)	1799
MseI	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
MslI	CAYNNNNRTG	1 cut(s)	1976
Msp20I	TGGCCA	1 cut(s)	1799
MspA1I	CMGCKG	2 cut(s)	420, 2049
MspI	CCGG	6 cut(s)	56, 138, 492, 859, 960, 1489
Mva1269I	GAATGC	2 cut(s)	1278, 1469
MvaI	CCWGG	7 cut(s)	95, 119, 281, 516, 1801, 1926, 2072
MvnI	CGCG	6 cut(s)	90, 101, 103, 381, 429, 437
NciI	CCSGG	5 cut(s)	56, 493, 960, 1489, 1490
NdeI	CATATG	3 cut(s)	1228, 1469, 2026
NlaIII	CATG	6 cut(s)	76, 995, 1150, 1316, 1861, 1907
NlaIV	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 1934
NmeAIII	GCCGAG	3 cut(s)	280, 397, 483
NmuCI	GTSAC	2 cut(s)	22, 1449
NruI	TCGCGA	1 cut(s)	381
NsbI	TGCGCA	1 cut(s)	1956
NsiI	ATGCAT	1 cut(s)	1469
NspI	RCATGY	2 cut(s)	76, 995
PagI	TCATGA	3 cut(s)	1146, 1312, 1903
PciSI	GCTCTTC	1 cut(s)	1989
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	1278, 1469
PfeI	GAWTC	3 cut(s)	376, 784, 2100
PflFI	GACNNNGTC	1 cut(s)	20
PflMI	CCANNNNNTGG	2 cut(s)	238, 1720
PfoI	TCCNGGA	1 cut(s)	117
Ple19I	CGATCG	2 cut(s)	441, 1834
PleI	GAGTC	3 cut(s)	377, 691, 1440
PpsI	GAGTC	3 cut(s)	377, 691, 1440
PshBI	ATTAAT	1 cut(s)	1083
Psp124BI	GAGCTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	1044
Psp6I	CCWGG	7 cut(s)	93, 117, 279, 514, 1799, 1924, 2070
PspFI	CCCAGC	3 cut(s)	420, 653, 2019
PspGI	CCWGG	7 cut(s)	93, 117, 279, 514, 1799, 1924, 2070
PspN4I	GGNNCC	6 cut(s)	136, 425, 446, 569, 1378, 1934
PspPI	GGNCC	6 cut(s)	283, 424, 489, 1009, 2017, 2092
PsuI	RGATCY	2 cut(s)	309, 1932
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	2 cut(s)	441, 1834
PvuII	CAGCTG	1 cut(s)	420
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	4 cut(s)	32, 1516, 1862, 1880
RsaNI	GTAC	4 cut(s)	31, 1515, 1861, 1879
RseI	CAYNNNNRTG	1 cut(s)	1976
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	1989
SaqAI	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
Sau96I	GGNCC	6 cut(s)	283, 424, 489, 1009, 2017, 2092
SchI	GAGTC	3 cut(s)	377, 692, 1441
SduI	GDGCHC	7 cut(s)	137, 261, 327, 572, 960, 1388, 1973
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	5 cut(s)	298, 786, 895, 1306, 1942
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	3 cut(s)	283, 424, 1009
SmaI	CCCGGG	1 cut(s)	1490
SmiMI	CAYNNNNRTG	1 cut(s)	1976
SmlI	CTYRAG	5 cut(s)	260, 767, 1115, 1381, 1966
SmoI	CTYRAG	5 cut(s)	260, 767, 1115, 1381, 1966
Sse9I	AATT	7 cut(s)	407, 1098, 1161, 1251, 1414, 1520, 1555
SspI	AATATT	2 cut(s)	967, 1671
SspMI	CTAG	2 cut(s)	330, 777
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	2095
TaaI	ACNGT	5 cut(s)	28, 179, 229, 1640, 1652
TaiI	ACGT	3 cut(s)	24, 1047, 1886
TaqI	TCGA	9 cut(s)	185, 597, 699, 732, 1020, 1079, 1348, 1435, 1830
TasI	AATT	7 cut(s)	407, 1098, 1161, 1251, 1414, 1520, 1555
TatI	WGTACW	3 cut(s)	30, 1514, 1878
TauI	GCSGC	7 cut(s)	371, 398, 405, 434, 437, 605, 2052
TfiI	GAWTC	3 cut(s)	376, 784, 2100
Tru1I	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
Tru9I	TTAA	6 cut(s)	351, 1074, 1083, 1419, 1673, 1886
TscAI	CASTG	2 cut(s)	116, 1978
TseFI	GTSAC	2 cut(s)	22, 1449
TseI	GCWGC	8 cut(s)	799, 1300, 1567, 1570, 1687, 1921, 2043, 2046
Tsp45I	GTSAC	2 cut(s)	22, 1449
TspDTI	ATGAA	5 cut(s)	17, 1674, 1693, 1976, 2124
TspGWI	ACGGA	2 cut(s)	376, 917
TspMI	CCCGGG	1 cut(s)	1488
TspRI	CASTG	2 cut(s)	116, 1978
Tth111I	GACNNNGTC	1 cut(s)	20
Van91I	CCANNNNNTGG	2 cut(s)	238, 1720
VpaK11BI	GGWCC	3 cut(s)	283, 424, 1009
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	1 cut(s)	2069
XapI	RAATTY	1 cut(s)	1520
XceI	RCATGY	2 cut(s)	76, 995
XmaI	CCCGGG	1 cut(s)	1488
XmiI	GTMKAC	1 cut(s)	1135
XspI	CTAG	2 cut(s)	330, 777
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	1469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.