Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8311277.1

Orthogroup ID

OG0010853

Physical Location & Seq

Genomic Coordinates Reverse (-)

15 .. 909

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8311277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggacgacgtcaccgtgtacttcccctacgaccacatctacccggagcaatacgcctacatgctggaactgaaacgcgccctggacgcgcgaggccactgcctcctggaaatgccgacgggcaccggaaaaaccatcgccctcctctcgctcatcaccagctacagtctctcgaagccctacaaccccgtcaagctcatctactgcacccgcaccgtccacgagatggagaagacgctcgccgagctcaagctcctccataaataccaggtccagcatctcggaaaacaggcggagatcctcgccatcgggctctctagtcgcaagaacctctgcgttaaccctaatgtgcttgccgccgagaatcgcgactccgtggacgccgcttgccgcaaattgaccgccagctgggtccgcgccgccgcgatcgggaaccctaatgtgccgagctgtgagttttttgagcagtttgagagggccgggcaaggtgtcgtcttgcctcctggggtttacaccttgcaggatttgagggcgtttggcaaggccgaagggtggtgcccttactttttggcgaggagaatggtcgaggcggccaatgtggtggtttatagttatcagtatttgcttgatcccaaagtggctgggattatatctaaggagttgcagaaggagtcggttgtggtgttcgatgaggctcacaatatagacaatgtgtgtatcgaggcgcttagtgttagtgtgaggaggcagacgcttgagggggctagaaggaatctcagtaagatgcagcaggatattgaaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

268

Amino Acids

30.2

Weight (kDa)

7.58

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03190 AT1G03190
fragaria_vesca	FvH4_2g23690
malus_domestica	MD03G1266200.v1.1 MD11G1286800.v1.1
prunus_persica	Prupe.8G242000_v2.0.a1 Prupe.8G242000_v2.0.a1
pyrus_communis	pycom03g21270
rosa_chinensis	RchiOBHm_Chr6g0291151
rosa_laevigata	RLG00000012140
rosa_multiflora	Rmu_co8311277.1_g000001 Rmu_sc0004642.1_g000023 Rmu_sc0013275.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176340
rosa_rugosa	Rorug06G0218000
rosa_samantha	Rh6AG328400 Rh6BG336000 Rh6CG342000 Rh6DG329300
rosa_wichuraiana	Rw6G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccB1I	GGYRCC	2 cut(s)	122, 555
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	6 cut(s)	78, 89, 91, 369, 417, 425
AclWI	GGATC	2 cut(s)	292, 623
AcoI	YGGCCR	1 cut(s)	591
AcyI	GRCGYC	2 cut(s)	9, 381
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	4 cut(s)	226, 408, 429, 552
AgsI	TTSAA	1 cut(s)	800
AjnI	CCWGG	4 cut(s)	81, 105, 267, 502
AluBI	AGCT	6 cut(s)	162, 196, 247, 253, 408, 450
AluI	AGCT	6 cut(s)	162, 196, 247, 253, 408, 450
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	2 cut(s)	292, 623
AoxI	GGCC	4 cut(s)	94, 477, 543, 591
ApeKI	GCWGC	1 cut(s)	787
AspLEI	GCGC	4 cut(s)	80, 91, 419, 727
AspS9I	GGNCC	3 cut(s)	271, 412, 477
AsuC2I	CCSGG	2 cut(s)	44, 481
AsuHPI	GGTGA	2 cut(s)	4, 148
AvaII	GGWCC	2 cut(s)	271, 412
BaeGI	GKGCMC	2 cut(s)	125, 560
BanI	GGYRCC	2 cut(s)	122, 555
BanII	GRGCYC	2 cut(s)	249, 315
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	799
BccI	CCATC	3 cut(s)	143, 220, 314
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	4 cut(s)	83, 107, 269, 504
BcnI	CCSGG	2 cut(s)	44, 481
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	318, 765
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	728
BisI	GCNGC	7 cut(s)	357, 384, 391, 420, 423, 591, 788
BlsI	GCNGC	7 cut(s)	358, 385, 392, 421, 424, 592, 789
Bme1390I	CCNGG	6 cut(s)	44, 83, 107, 269, 481, 504
Bme18I	GGWCC	2 cut(s)	271, 412
BmgT120I	GGNCC	3 cut(s)	271, 412, 477
BmiI	GGNNCC	4 cut(s)	124, 413, 434, 557
BmrFI	CCNGG	6 cut(s)	44, 83, 107, 269, 481, 504
BmsI	GCATC	2 cut(s)	286, 774
BpiI	GAAGAC	1 cut(s)	239
BpuEI	CTTGAG	2 cut(s)	233, 776
BpuMI	CCSGG	2 cut(s)	44, 481
BsaHI	GRCGYC	2 cut(s)	9, 381
BsaJI	CCNNGG	3 cut(s)	81, 375, 503
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 408, 429, 552
BseBI	CCWGG	4 cut(s)	83, 107, 269, 504
BseDI	CCNNGG	3 cut(s)	81, 375, 503
BseLI	CCNNNNNNNGG	4 cut(s)	226, 408, 429, 552
BseMII	CTCAG	1 cut(s)	790
BseRI	GAGGAG	4 cut(s)	134, 245, 589, 757
BseSI	GKGCMC	2 cut(s)	125, 560
BseXI	GCAGC	1 cut(s)	799
BseYI	CCCAGC	2 cut(s)	408, 641
BsgI	GTGCAG	1 cut(s)	190
Bsh1236I	CGCG	6 cut(s)	78, 89, 91, 369, 417, 425
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	4 cut(s)	96, 479, 545, 593
BshNI	GGYRCC	2 cut(s)	122, 555
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	44, 126, 480
BslI	CCNNNNNNNGG	4 cut(s)	226, 408, 429, 552
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	96, 479, 545, 593
Bsp1286I	GDGCHC	4 cut(s)	125, 249, 315, 560
Bsp143I	GATC	3 cut(s)	297, 426, 628
Bsp68I	TCGCGA	1 cut(s)	369
BspANI	GGCC	4 cut(s)	96, 479, 545, 593
BspCNI	CTCAG	1 cut(s)	789
BspFNI	CGCG	6 cut(s)	78, 89, 91, 369, 417, 425
BspLI	GGNNCC	4 cut(s)	124, 413, 434, 557
BspPI	GGATC	2 cut(s)	292, 623
BspT107I	GGYRCC	2 cut(s)	122, 555
BssECI	CCNNGG	3 cut(s)	81, 375, 503
BssMI	GATC	3 cut(s)	297, 426, 628
BssNI	GRCGYC	2 cut(s)	9, 381
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	4 cut(s)	83, 107, 269, 504
Bst4CI	ACNGT	3 cut(s)	16, 167, 217
BstACI	GRCGYC	2 cut(s)	9, 381
BstC8I	GCNNGC	4 cut(s)	240, 354, 388, 406
BstDEI	CTNAG	3 cut(s)	654, 728, 776
BstDSI	CCRYGG	1 cut(s)	375
BstFNI	CGCG	6 cut(s)	78, 89, 91, 369, 417, 425
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	4 cut(s)	80, 91, 419, 727
BstKTI	GATC	3 cut(s)	300, 429, 631
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	3 cut(s)	297, 426, 628
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 244, 414
BstNI	CCWGG	4 cut(s)	83, 107, 269, 504
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	6 cut(s)	42, 81, 105, 267, 479, 502
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	2 cut(s)	125, 560
BstUI	CGCG	6 cut(s)	78, 89, 91, 369, 417, 425
BstV1I	GCAGC	1 cut(s)	799
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	4 cut(s)	96, 479, 545, 593
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	4 cut(s)	240, 354, 388, 406
CfoI	GCGC	4 cut(s)	80, 91, 419, 727
Cfr13I	GGNCC	3 cut(s)	271, 412, 477
CseI	GACGC	4 cut(s)	95, 244, 389, 760
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	654, 728, 776
DpnI	GATC	3 cut(s)	299, 428, 630
DpnII	GATC	3 cut(s)	297, 426, 628
EaeI	YGGCCR	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	2 cut(s)	249, 315
Eco47I	GGWCC	2 cut(s)	271, 412
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	4 cut(s)	81, 105, 267, 502
EcoT38I	GRGCYC	2 cut(s)	249, 315
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	62, 261, 609, 650, 704
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	7 cut(s)	357, 384, 391, 420, 423, 591, 788
FriOI	GRGCYC	2 cut(s)	249, 315
Fsp4HI	GCNGC	7 cut(s)	357, 384, 391, 420, 423, 591, 788
FspBI	CTAG	2 cut(s)	318, 765
GlaI	GCGC	4 cut(s)	79, 90, 418, 726
GluI	GCNGC	7 cut(s)	357, 384, 391, 420, 423, 591, 788
GsaI	CCCAGC	2 cut(s)	412, 645
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	4 cut(s)	96, 479, 545, 593
HapII	CCGG	3 cut(s)	44, 126, 480
HgaI	GACGC	4 cut(s)	95, 244, 389, 760
HhaI	GCGC	4 cut(s)	80, 91, 419, 727
Hin1I	GRCGYC	2 cut(s)	9, 381
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	4 cut(s)	78, 89, 417, 725
HinP1I	GCGC	4 cut(s)	78, 89, 417, 725
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	4 cut(s)	364, 371, 671, 772
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	3 cut(s)	44, 126, 480
HphI	GGTGA	2 cut(s)	4, 148
Hpy166II	GTNNAC	5 cut(s)	19, 220, 340, 379, 511
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	3 cut(s)	172, 368, 430
Hpy8I	GTNNAC	5 cut(s)	19, 220, 340, 379, 511
Hpy99I	CGWCG	2 cut(s)	11, 121
HpyAV	CCTTC	3 cut(s)	542, 661, 762
HpyCH4III	ACNGT	3 cut(s)	16, 167, 217
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	207, 520, 664, 787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 244, 414
HpyF3I	CTNAG	3 cut(s)	654, 728, 776
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	2 cut(s)	9, 381
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	4 cut(s)	78, 89, 417, 725
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	297, 426, 628
LmnI	GCTCC	2 cut(s)	46, 258
Lsp1109I	GCAGC	1 cut(s)	799
LweI	GCATC	2 cut(s)	286, 774
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	2 cut(s)	318, 765
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	299, 428, 630
MboI	GATC	3 cut(s)	297, 426, 628
MboII	GAAGA	1 cut(s)	244
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	4 cut(s)	125, 249, 315, 560
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	365, 680
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	3 cut(s)	44, 126, 480
MspR9I	CCNGG	6 cut(s)	44, 83, 107, 269, 481, 504
MvaI	CCWGG	4 cut(s)	83, 107, 269, 504
MvnI	CGCG	6 cut(s)	78, 89, 91, 369, 417, 425
MwoI	GCNNNNNNNGC	3 cut(s)	86, 244, 414
NciI	CCSGG	2 cut(s)	44, 481
NdeII	GATC	3 cut(s)	297, 426, 628
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	4 cut(s)	124, 413, 434, 557
NmeAIII	GCCGAG	3 cut(s)	268, 385, 471
NmuCI	GTSAC	1 cut(s)	10
NruI	TCGCGA	1 cut(s)	369
NspI	RCATGY	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	364, 772
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	7 cut(s)	358, 385, 392, 421, 424, 592, 789
Ple19I	CGATCG	1 cut(s)	429
PleI	GAGTC	2 cut(s)	365, 679
PpsI	GAGTC	2 cut(s)	365, 679
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	4 cut(s)	81, 105, 267, 502
PspFI	CCCAGC	2 cut(s)	408, 641
PspGI	CCWGG	4 cut(s)	81, 105, 267, 502
PspN4I	GGNNCC	4 cut(s)	124, 413, 434, 557
PspPI	GGNCC	3 cut(s)	271, 412, 477
PsuI	RGATCY	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	8
PvuI	CGATCG	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	408
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	7 cut(s)	357, 384, 391, 420, 423, 591, 788
Sau3AI	GATC	3 cut(s)	297, 426, 628
Sau96I	GGNCC	3 cut(s)	271, 412, 477
SchI	GAGTC	2 cut(s)	365, 680
ScrFI	CCNGG	6 cut(s)	44, 83, 107, 269, 481, 504
SduI	GDGCHC	4 cut(s)	125, 249, 315, 560
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	286, 774
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	271, 412
SmlI	CTYRAG	2 cut(s)	248, 755
SmoI	CTYRAG	2 cut(s)	248, 755
Sse9I	AATT	1 cut(s)	395
SspMI	CTAG	2 cut(s)	318, 765
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	6 cut(s)	42, 81, 105, 267, 479, 502
TaaI	ACNGT	3 cut(s)	16, 167, 217
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	4 cut(s)	173, 585, 687, 720
TasI	AATT	1 cut(s)	395
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	6 cut(s)	359, 386, 393, 422, 425, 593
TfiI	GAWTC	2 cut(s)	364, 772
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	787
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	104
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	271, 412
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	2 cut(s)	318, 765
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.