Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004010

Physical Location & Seq

Genomic Coordinates Reverse (-)

3975023 .. 3976269

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1035400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTTGTTTTGCTGAAGGAAGTTTTTCATAAAATGTTAAATACTGACTATAAGAGTGCACTTTCTCGTTCTTTTTGTAACAGAAACCAGGAGCAGACTGGTTTCGTTGGTCGGGCAGAGTTTTACAATGCCCTTAGAATTGTCACTGTGGCACAAAGTAAGAGAGAACTTACACCAGAAATGGTGAAGGAAGCATTATATGGCCCGGCTGCAGCTAAAATACATGCACCCAAGATAAATCTTGCTGCGACTCCTGTGCCTCAGTTCAATTCTGCTGCAGCAGCACCTGACATTCAAGGTGGTGTTGTCACTCTGACATCCTCACGAAATCTTGGGTTCAGGGGACCGCAATTACCACCTCAGCATAATTCTGCTGGAGCAGCAGGTGCCACTCAGGGTGGCACTGTCACTCCGACGTCCTGCCAAAACTTGGGTTCAGGGGACCACAAATACAATCTCGGTTTAATTCTGCTCCAACAGCTACTCAGAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

166

Amino Acids

17.69

Weight (kDa)

9.74

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21630 AT1G21630 AT1G21630 AT1G21630
fragaria_vesca	FvH4_2g16750 FvH4_2g16750 FvH4_2g16750
malus_domestica	MD04G1035400.v1.1 MD05G1135500.v1.1 MD05G1137000.v1.1 MD10G1140800.v1.1
prunus_persica	Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1
pyrus_communis	pycom03g08400 pycom05g13210 pycom05g13310 pycom10g11940 pycom10g11970
rosa_chinensis	RchiOBHm_Chr6g0280871
rosa_laevigata	RLG00000013024
rosa_multiflora	Rmu_co8142976.1_g000001 Rmu_co8285335.1_g000001 Rmu_sc0004772.1_g000002 Rmu_sc0026236.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187540
rosa_rugosa	Rorug06G0135900
rosa_samantha	Rh6AG248700 Rh6BG250400 Rh6BG250600 Rh6CG251400 Rh6DG243100
rosa_wichuraiana	Rw6G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
AatII	GACGTC	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	430
AciI	CCGC	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	268, 296
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	215, 481
AluI	AGCT	2 cut(s)	215, 481
Alw21I	GWGCWC	1 cut(s)	61
Alw44I	GTGCAC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	202
ApaLI	GTGCAC	1 cut(s)	57
ApeKI	GCWGC	7 cut(s)	209, 212, 245, 275, 278, 281, 380
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	3 cut(s)	203, 344, 442
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	344, 442
BaeGI	GKGCMC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	7 cut(s)	196, 224, 232, 262, 290, 293, 392
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	206
BfmI	CTRYAG	2 cut(s)	210, 276
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	7 cut(s)	210, 213, 246, 276, 279, 282, 381
BlsI	GCNGC	7 cut(s)	211, 214, 247, 277, 280, 283, 382
Bme1390I	CCNGG	2 cut(s)	89, 206
Bme18I	GGWCC	2 cut(s)	344, 442
BmgT120I	GGNCC	3 cut(s)	203, 344, 442
BmiI	GGNNCC	3 cut(s)	345, 388, 443
BmrFI	CCNGG	2 cut(s)	89, 206
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	3 cut(s)	275, 374, 407
BseNI	ACTGG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	7 cut(s)	196, 224, 232, 262, 290, 293, 392
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	357, 455
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmFI	GGGAC	2 cut(s)	357, 455
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	4 cut(s)	274, 373, 406, 498
BspLI	GGNNCC	3 cut(s)	345, 388, 443
BspMAI	CTGCAG	2 cut(s)	214, 280
BspMI	ACCTGC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	148, 406
BstACI	GRCGYC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstDEI	CTNAG	5 cut(s)	134, 261, 360, 393, 485
BstF5I	GGATG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 380, 386, 478
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	87, 204
BstSFI	CTRYAG	2 cut(s)	210, 276
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	7 cut(s)	196, 224, 232, 262, 290, 293, 392
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	144, 402
BveI	ACCTGC	1 cut(s)	374
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	203, 344, 442
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	4 cut(s)	204, 209, 215, 481
CviKI_1	RGCY	4 cut(s)	204, 209, 215, 481
DdeI	CTNAG	5 cut(s)	134, 261, 360, 393, 485
Eco47I	GGWCC	2 cut(s)	344, 442
Eco57I	CTGAAG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	227
FaiI	YATR	6 cut(s)	30, 51, 199, 201, 225, 366
FaqI	GGGAC	2 cut(s)	357, 455
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	7 cut(s)	210, 213, 246, 276, 279, 282, 381
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	7 cut(s)	210, 213, 246, 276, 279, 282, 381
GluI	GCNGC	7 cut(s)	210, 213, 246, 276, 279, 282, 381
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	227
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	3 cut(s)	315, 414, 488
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	10, 181
HpyCH4III	ACNGT	2 cut(s)	148, 406
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	4 cut(s)	59, 212, 227, 278
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 380, 386, 478
HpyF3I	CTNAG	5 cut(s)	134, 261, 360, 393, 485
HpySE526I	ACGT	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	1 cut(s)	227
LmnI	GCTCC	3 cut(s)	91, 377, 477
Lsp1109I	GCAGC	7 cut(s)	196, 224, 232, 262, 290, 293, 392
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	4 cut(s)	77, 142, 307, 406
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	5 cut(s)	138, 268, 350, 367, 465
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	3 cut(s)	270, 331, 369
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	2 cut(s)	38, 464
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	89, 206
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	281, 380, 386, 478
NciI	CCSGG	1 cut(s)	206
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	3 cut(s)	345, 388, 443
NmuCI	GTSAC	3 cut(s)	142, 307, 406
NspI	RCATGY	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	7 cut(s)	211, 214, 247, 277, 280, 283, 382
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	345, 388, 443
PspPI	GGNCC	3 cut(s)	203, 344, 442
PstI	CTGCAG	2 cut(s)	214, 280
PstNI	CAGNNNCTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	38, 464
SatI	GCNGC	7 cut(s)	210, 213, 246, 276, 279, 282, 381
Sau96I	GGNCC	3 cut(s)	203, 344, 442
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	89, 206
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	7 cut(s)	217, 289, 301, 361, 388, 419, 483
SfcI	CTRYAG	2 cut(s)	210, 276
SinI	GGWCC	2 cut(s)	344, 442
Sse9I	AATT	5 cut(s)	138, 268, 350, 367, 465
SsiI	CCGC	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	87, 204
TaaI	ACNGT	2 cut(s)	148, 406
TaiI	ACGT	1 cut(s)	419
TasI	AATT	5 cut(s)	138, 268, 350, 367, 465
Tru1I	TTAA	2 cut(s)	38, 464
Tru9I	TTAA	2 cut(s)	38, 464
TscAI	CASTG	2 cut(s)	151, 409
TseFI	GTSAC	3 cut(s)	142, 307, 406
TseI	GCWGC	7 cut(s)	209, 212, 245, 275, 278, 281, 380
Tsp45I	GTSAC	3 cut(s)	142, 307, 406
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	151, 409
Van91I	CCANNNNNTGG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	344, 442
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	24
ZraI	GACGTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.