Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004010

Physical Location & Seq

Genomic Coordinates Forward (+)

16898847 .. 16901459

Gene Structure 2613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAGGATTGGGATAAATTTGAAGATGAAGGATTGCATTTCGAGGAAGATGCTTTTGCACGGCCCTGTTAGGGATGGTTTCTATCCTCTCCAAGGATTCACTTGTGTCAAGGAGCTCACTCTTGATGTGTCAAATGTCTTGGCACCTCCAAAACAGAAATCATCATCAGTTCAGAAAGAAAAAGCTCCCCAAGTTGAGAGTCCAACAACTGCTTCTTCACCTAAAGTTGATGTTAAGTCAGAAAAGTCTCAAGGTACCGATGCCGAGGTTGTTGAAAATGGAGCAACATATGATAAAAATGAGGACGAGTCAGCAAAAAGTGCTCGGAACAGTCCATTTGCCAGCTGTACTGTTGGAAGCCCATCTAGAGAATTTTCAGATTCTAACGATGGAAAGACAACAGACGCAGACGCCTCACCCTGTAATAAGGAATCTCAAAGTGATGATCAAGCGGGTGTTGGGTCTATGTTTTCTGGCGACAAAGGTTCCGATGAACCAGCATGGTGGACATTTGACACTAATGATGACGTTGACTCCGTGTGGGGTTTCAATGCAATTAGTACCACCAAGGATATGGATAAGGAGAGTAATAAGGATCAATACTTTTCTGGCCCTGGGGAGTTCGGCCTCTATCCTATCAGGACTGGGTCATCACAAGGAGGTGGCTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

225

Amino Acids

24.09

Weight (kDa)

4.68

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21630 AT1G21630 AT1G21630 AT1G21630
fragaria_vesca	FvH4_2g16750 FvH4_2g16750 FvH4_2g16750
malus_domestica	MD04G1035400.v1.1 MD05G1135500.v1.1 MD05G1137000.v1.1 MD10G1140800.v1.1
prunus_persica	Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1
pyrus_communis	pycom03g08400 pycom05g13210 pycom05g13310 pycom10g11940 pycom10g11970
rosa_chinensis	RchiOBHm_Chr6g0280871
rosa_laevigata	RLG00000013024
rosa_multiflora	Rmu_co8142976.1_g000001 Rmu_co8285335.1_g000001 Rmu_sc0004772.1_g000002 Rmu_sc0026236.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187540
rosa_rugosa	Rorug06G0135900
rosa_samantha	Rh6AG248700 Rh6BG250400 Rh6BG250600 Rh6CG251400 Rh6DG243100
rosa_wichuraiana	Rw6G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	142, 254
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	603
AcsI	RAATTY	2 cut(s)	16, 371
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	3 cut(s)	256, 349, 562
AfiI	CCNNNNNNNGG	2 cut(s)	70, 92
AgsI	TTSAA	3 cut(s)	22, 275, 550
AjnI	CCWGG	1 cut(s)	613
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	3 cut(s)	115, 185, 345
AluI	AGCT	3 cut(s)	115, 185, 345
Alw21I	GWGCWC	2 cut(s)	117, 325
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	603
AoxI	GGCC	3 cut(s)	61, 610, 625
ApoI	RAATTY	2 cut(s)	16, 371
Asp718I	GGTACC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	62, 611
AsuHPI	GGTGA	2 cut(s)	210, 408
BanI	GGYRCC	2 cut(s)	142, 254
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	2 cut(s)	117, 325
BccI	CCATC	3 cut(s)	68, 370, 383
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	615
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	2 cut(s)	366, 673
Bme1390I	CCNGG	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	62, 611
BmiI	GGNNCC	3 cut(s)	144, 256, 487
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	39, 250
BmuI	ACTGGG	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	5 cut(s)	91, 264, 567, 613, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 92
Bse1I	ACTGG	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	5 cut(s)	91, 264, 567, 613, 614
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	70, 92
BseNI	ACTGG	1 cut(s)	649
BshFI	GGCC	3 cut(s)	63, 612, 627
BshNI	GGYRCC	2 cut(s)	142, 254
BsiHKAI	GWGCWC	2 cut(s)	117, 325
BslI	CCNNNNNNNGG	2 cut(s)	70, 92
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	63, 612, 627
Bsp1286I	GDGCHC	2 cut(s)	117, 325
Bsp143I	GATC	2 cut(s)	445, 595
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	3 cut(s)	63, 612, 627
BspLI	GGNNCC	3 cut(s)	144, 256, 487
BspPI	GGATC	1 cut(s)	603
BspT107I	GGYRCC	2 cut(s)	142, 254
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	5 cut(s)	91, 264, 567, 613, 614
BssMI	GATC	2 cut(s)	445, 595
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	91, 567
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	332, 352
BstACI	GRCGYC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	343
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	448, 598
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	445, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	613
BstXI	CCANNNNNNTGG	2 cut(s)	504, 574
BsuRI	GGCC	3 cut(s)	63, 612, 627
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	62, 611
CseI	GACGC	2 cut(s)	413, 419
Csp6I	GTAC	3 cut(s)	255, 348, 561
CviAII	CATG	1 cut(s)	501
CviJI	RGCY	8 cut(s)	63, 115, 185, 345, 360, 612, 627, 666
CviKI_1	RGCY	8 cut(s)	63, 115, 185, 345, 360, 612, 627, 666
CviQI	GTAC	3 cut(s)	255, 348, 561
DpnI	GATC	2 cut(s)	447, 597
DpnII	GATC	2 cut(s)	445, 595
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	91, 567
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	91, 567
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	91, 567
FaeI	CATG	1 cut(s)	504
FaiI	YATR	5 cut(s)	289, 291, 467, 502, 575
FatI	CATG	1 cut(s)	500
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	445
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	366, 673
HaeIII	GGCC	3 cut(s)	63, 612, 627
HgaI	GACGC	2 cut(s)	413, 419
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	6 cut(s)	96, 199, 308, 380, 431, 533
HphI	GGTGA	2 cut(s)	210, 408
Hpy166II	GTNNAC	2 cut(s)	507, 532
Hpy188I	TCNGA	5 cut(s)	174, 241, 327, 379, 490
Hpy188III	TCNNGA	3 cut(s)	122, 366, 640
Hpy8I	GTNNAC	2 cut(s)	507, 532
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	332, 352
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	3 cut(s)	36, 58, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	504
KpnI	GGTACC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	445, 595
LmnI	GCTCC	3 cut(s)	112, 190, 281
LweI	GCATC	2 cut(s)	39, 250
MaeI	CTAG	2 cut(s)	366, 673
MaeII	ACGT	1 cut(s)	528
MalI	GATC	2 cut(s)	447, 597
MboI	GATC	2 cut(s)	445, 595
MboII	GAAGA	3 cut(s)	34, 58, 207
MhlI	GDGCHC	2 cut(s)	117, 325
MluCI	AATT	3 cut(s)	16, 371, 555
MlyI	GAGTC	3 cut(s)	208, 317, 527
MmeI	TCCRAC	2 cut(s)	227, 334
MnlI	CCTC	8 cut(s)	36, 96, 156, 259, 295, 424, 638, 653
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	445, 595
NlaIII	CATG	1 cut(s)	504
NlaIV	GGNNCC	3 cut(s)	144, 256, 487
NmeAIII	GCCGAG	1 cut(s)	289
PasI	CCCWGGG	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	96, 380, 431
PflFI	GACNNNGTC	1 cut(s)	646
PleI	GAGTC	3 cut(s)	207, 316, 527
PpsI	GAGTC	3 cut(s)	207, 316, 527
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	144, 256, 487
PspPI	GGNCC	2 cut(s)	62, 611
PsyI	GACNNNGTC	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	345
RsaI	GTAC	3 cut(s)	256, 349, 562
RsaNI	GTAC	3 cut(s)	255, 348, 561
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	445, 595
Sau96I	GGNCC	2 cut(s)	62, 611
SchI	GAGTC	3 cut(s)	208, 317, 527
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	2 cut(s)	117, 325
SfaNI	GCATC	2 cut(s)	39, 250
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	16, 371, 555
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	2 cut(s)	366, 673
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	2 cut(s)	91, 567
TaaI	ACNGT	2 cut(s)	332, 352
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	16, 371, 555
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	3 cut(s)	96, 380, 431
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	41, 507
TspGWI	ACGGA	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	646
XagI	CCTNNNNNAGG	1 cut(s)	90
XapI	RAATTY	2 cut(s)	16, 371
XbaI	TCTAGA	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XspI	CTAG	2 cut(s)	366, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.