Rorug06G0135900

Epidermal growth factor receptor substrate 15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004010
Physical Location & Seq
Forward (+)
19225973 .. 19227260
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0135900.1

Sequence Viewer

Length: 300 bp
ATGGAGATCATGGAAGGAGACACCAACATGAGAACATTCGACATGGGTGCACTTAGGTCAAGTCTTCCCCGGAACCAGAGAGGGTTGTCAAGGTACTACTCTGGAAAAGCACGATCATTTACGTGCATGGCCGATGTCCGATGCCTAGAAGATCTCAAGAAACCAGAACGTCCCGATGCGAAAAAGAGGAAGAAACATACTGAGAAGAAGAACTATGCTGTTCCAGCTCCCTATCCTCCCATTCCATGTCGACGAGTTTCTAGTACCACCCAATTTGCTACACCCTGTGTTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_4 EF-hand_5

Protein Analysis

99

Amino Acids

11.27

Weight (kDa)

9.85

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 2 cut(s) 95, 265
AfiI CCNNNNNNNGG 1 cut(s) 290
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 48
AoxI GGCC 1 cut(s) 129
ApaLI GTGCAC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 146, 261
BglII AGATCT 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 131, 166
BpiI GAAGAC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 52
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 6, 113, 151
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 3 cut(s) 6, 113, 151
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 53, 201
BstKTI GATC 3 cut(s) 9, 116, 154
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 6, 113, 151
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 94, 264
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 5 cut(s) 10, 28, 43, 127, 246
CviJI RGCY 2 cut(s) 131, 227
CviKI_1 RGCY 2 cut(s) 131, 227
CviQI GTAC 2 cut(s) 94, 264
DdeI CTNAG 2 cut(s) 53, 201
DpnI GATC 3 cut(s) 8, 115, 153
DpnII GATC 3 cut(s) 6, 113, 151
DraIII CACNNNGTG 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 129
FaeI CATG 5 cut(s) 13, 31, 46, 130, 249
FaiI YATR 7 cut(s) 11, 29, 44, 128, 198, 216, 247
FaqI GGGAC 1 cut(s) 156
FatI CATG 5 cut(s) 9, 27, 42, 126, 245
FblI GTMKAC 1 cut(s) 250
FspBI CTAG 2 cut(s) 146, 261
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 70
Hin1II CATG 5 cut(s) 13, 31, 46, 130, 249
HincII GTYRAC 1 cut(s) 251
HindII GTYRAC 1 cut(s) 251
HpaII CCGG 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 50, 251
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 3 cut(s) 102, 157, 173
Hpy8I GTNNAC 2 cut(s) 50, 251
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 2 cut(s) 122, 169
HpyCH4V TGCA 2 cut(s) 50, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 53, 201
HpySE526I ACGT 2 cut(s) 122, 169
Hsp92II CATG 5 cut(s) 13, 31, 46, 130, 249
Kzo9I GATC 3 cut(s) 6, 113, 151
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 5 cut(s) 83, 87, 89, 177, 237
LweI GCATC 2 cut(s) 131, 166
MaeI CTAG 2 cut(s) 146, 261
MaeII ACGT 2 cut(s) 122, 169
MalI GATC 3 cut(s) 8, 115, 153
MboI GATC 3 cut(s) 6, 113, 151
MboII GAAGA 5 cut(s) 56, 161, 202, 217, 220
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 272
MnlI CCTC 3 cut(s) 74, 180, 246
MslI CAYNNNNRTG 2 cut(s) 26, 121
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 70
NdeII GATC 3 cut(s) 6, 113, 151
NlaIII CATG 5 cut(s) 13, 31, 46, 130, 249
NlaIV GGNNCC 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 2 cut(s) 95, 265
RsaNI GTAC 2 cut(s) 94, 264
RseI CAYNNNNRTG 2 cut(s) 26, 121
SalI GTCGAC 1 cut(s) 249
Sau3AI GATC 3 cut(s) 6, 113, 151
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 52
SetI ASST 5 cut(s) 59, 95, 125, 172, 229
SfaNI GCATC 2 cut(s) 131, 166
SmiMI CAYNNNNRTG 2 cut(s) 26, 121
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 272
SspMI CTAG 2 cut(s) 146, 261
StyD4I CCNGG 1 cut(s) 68
TaiI ACGT 2 cut(s) 125, 172
TaqI TCGA 2 cut(s) 39, 250
TasI AATT 1 cut(s) 272
VneI GTGCAC 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 2 cut(s) 146, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.