Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004010

Physical Location & Seq

Genomic Coordinates Forward (+)

15575997 .. 15577345

Gene Structure 1349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGGATTGGGATAAGTTTGAAGACGAAGAAATCATCATCAGTTCAGAAAGAAAAAGCTCCTCCAGTTGAGGGTCCAACTGCTTCTTCACCTAAAGTTGATGTTAAGTCAGAAAAGCCTCAAAGTGCGGATGACAAGGTTGCTGAAAATGGAGCAGCATATGATAAAAATGAAGAGGAGTCCGCAAAAAGTGCTCCGAACAGTCCATTTGCCACCAGTACCGTTGGAAGCCCATCTAGAGAATTTTCAGATTCTAACTATGGAAGGACAACAGGCACAGAGGCCTCGCCCCGTGATAAGGAATCTCAAAGTGATGATCATGGGGGTGCTGGATCTGTGTTTTCCGGTGACAAAGGTTTCGATAAACCAGCATGGGGGACATTTGACACTAATGATGACGTTGACTCGGTGTGGGGTTTTAATGCAGTTAGTACCACCAAGTTTCCATTATTTTGCACCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

155

Amino Acids

16.33

Weight (kDa)

4.94

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21630 AT1G21630 AT1G21630 AT1G21630
fragaria_vesca	FvH4_2g16750 FvH4_2g16750 FvH4_2g16750
malus_domestica	MD04G1035400.v1.1 MD05G1135500.v1.1 MD05G1137000.v1.1 MD10G1140800.v1.1
prunus_persica	Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1
pyrus_communis	pycom03g08400 pycom05g13210 pycom05g13310 pycom10g11940 pycom10g11970
rosa_chinensis	RchiOBHm_Chr6g0280871
rosa_laevigata	RLG00000013024
rosa_multiflora	Rmu_co8142976.1_g000001 Rmu_co8285335.1_g000001 Rmu_sc0004772.1_g000002 Rmu_sc0026236.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187540
rosa_rugosa	Rorug06G0135900
rosa_samantha	Rh6AG248700 Rh6BG250400 Rh6BG250600 Rh6CG251400 Rh6DG243100
rosa_wichuraiana	Rw6G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	128, 183
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	2 cut(s)	220, 433
AfiI	CCNNNNNNNGG	3 cut(s)	71, 298, 374
AgsI	TTSAA	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw21I	GWGCWC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	81, 359
AvaII	GGWCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	316
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 298, 374
Bse1I	ACTGG	2 cut(s)	65, 216
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	3 cut(s)	71, 298, 374
BseNI	ACTGG	2 cut(s)	65, 216
BseRI	GAGGAG	2 cut(s)	51, 191
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	3 cut(s)	71, 298, 374
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	316, 332
BspACI	CCGC	2 cut(s)	128, 183
BspANI	GGCC	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	65, 216
BssMI	GATC	2 cut(s)	316, 332
Bst4CI	ACNGT	2 cut(s)	203, 223
Bst6I	CTCTTC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	319, 335
BstMBI	GATC	2 cut(s)	316, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	219, 432
CviAII	CATG	2 cut(s)	320, 372
CviJI	RGCY	4 cut(s)	59, 118, 231, 284
CviKI_1	RGCY	4 cut(s)	59, 118, 231, 284
CviQI	GTAC	2 cut(s)	219, 432
DpnI	GATC	2 cut(s)	318, 334
DpnII	GATC	2 cut(s)	316, 332
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	74
FaeI	CATG	2 cut(s)	323, 375
FaiI	YATR	5 cut(s)	160, 162, 261, 321, 373
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	2 cut(s)	319, 371
FauNDI	CATATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	2 cut(s)	323, 375
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	4 cut(s)	179, 251, 302, 404
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	81, 359
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	4 cut(s)	48, 112, 198, 250
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	203, 223
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	425, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	323, 375
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	316, 332
LmnI	GCTCC	3 cut(s)	64, 152, 199
LpnPI	CCDG	6 cut(s)	78, 229, 258, 315, 358, 381
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	2 cut(s)	318, 334
MboI	GATC	2 cut(s)	316, 332
MboII	GAAGA	4 cut(s)	34, 40, 78, 185
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	188, 398
MmeI	TCCRAC	2 cut(s)	101, 205
MnlI	CCTC	6 cut(s)	64, 72, 129, 169, 274, 295
MseI	TTAA	3 cut(s)	105, 420, 463
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	2 cut(s)	316, 332
NlaIII	CATG	2 cut(s)	323, 375
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	251, 302
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	187, 398
PpsI	GAGTC	2 cut(s)	187, 398
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	220, 433
RsaNI	GTAC	2 cut(s)	219, 432
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	105, 420, 463
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	316, 332
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	2 cut(s)	188, 398
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	6 cut(s)	61, 94, 141, 358, 402, 461
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	242
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	2 cut(s)	128, 183
SspMI	CTAG	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	203, 223
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	360
TasI	AATT	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	251, 302
Tru1I	TTAA	3 cut(s)	105, 420, 463
Tru9I	TTAA	3 cut(s)	105, 420, 463
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	242
XbaI	TCTAGA	1 cut(s)	236
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.