Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026236.1

Orthogroup ID

OG0004010

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1459

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggcgaatgtcgatctattcgatgcgtatttccgacgagccgatttggaccgcgatggtcgaattagtggcgccgaagccgtcgctttcttccaagcctccggtctcccaaaaccggtccttgcgcagatatgggcacatgcagatcggaggcagactggttttcttggtcgggaagagttctacaatgctcttagacttgtcactgtggcacaaagtaagcgagaccttacccccgaaattgtgaaggcagctttatatggtccagctgcatctaaaatacctgcaccacaaataaatttgacgggtacacctgcacctgcacctgcacctcagttcagttctgctccaccagtatcttccaccccaggtggtgctgttactcccacatcctcccaaaatcttgggttaagggggccacaagtttcttcaaatgtaaatatgaaccaccaagctttcctttctcaaggtcagacaatgaggccaccagtgcctcaatctactactgctgcttcccaactgacgcaaggtgtttcttcacaagggttctcccagggagtttcagtggtaggttctcgtccaccaaactcgagcatgtcaaatgattgggttggaggaagggcaggtggatctgtgacagggatgcactcacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

218

Amino Acids

22.77

Weight (kDa)

10.09

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21630 AT1G21630 AT1G21630 AT1G21630
fragaria_vesca	FvH4_2g16750 FvH4_2g16750 FvH4_2g16750
malus_domestica	MD04G1035400.v1.1 MD05G1135500.v1.1 MD05G1137000.v1.1 MD10G1140800.v1.1
prunus_persica	Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1
pyrus_communis	pycom03g08400 pycom05g13210 pycom05g13310 pycom10g11940 pycom10g11970
rosa_chinensis	RchiOBHm_Chr6g0280871
rosa_laevigata	RLG00000013024
rosa_multiflora	Rmu_co8142976.1_g000001 Rmu_co8285335.1_g000001 Rmu_sc0004772.1_g000002 Rmu_sc0026236.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187540
rosa_rugosa	Rorug06G0135900
rosa_samantha	Rh6AG248700 Rh6BG250400 Rh6BG250600 Rh6CG251400 Rh6DG243100
rosa_wichuraiana	Rw6G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	4 cut(s)	322, 328, 334, 614
Acc16I	TGCGCA	1 cut(s)	126
Acc36I	ACCTGC	5 cut(s)	292, 322, 328, 334, 614
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	432
AjnI	CCWGG	2 cut(s)	367, 552
AluBI	AGCT	3 cut(s)	254, 269, 455
AluI	AGCT	3 cut(s)	254, 269, 455
Alw26I	GTCTC	2 cut(s)	110, 219
AlwI	GGATC	1 cut(s)	637
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	2 cut(s)	416, 482
ApeKI	GCWGC	3 cut(s)	251, 269, 509
ApoI	RAATTY	1 cut(s)	298
AsiGI	ACCGGT	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	74, 127
AspS9I	GGNCC	4 cut(s)	49, 118, 263, 416
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	3 cut(s)	49, 118, 263
BaeGI	GKGCMC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	256, 263, 496
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	2 cut(s)	369, 554
BcoDI	GTCTC	2 cut(s)	110, 219
BfoI	RGCGCY	1 cut(s)	75
BfuAI	ACCTGC	5 cut(s)	292, 322, 328, 334, 614
BisI	GCNGC	3 cut(s)	252, 270, 510
BlsI	GCNGC	3 cut(s)	253, 271, 511
Bme1390I	CCNGG	2 cut(s)	369, 554
Bme18I	GGWCC	3 cut(s)	49, 118, 263
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	4 cut(s)	49, 118, 263, 416
BmiI	GGNNCC	2 cut(s)	73, 417
BmrFI	CCNGG	2 cut(s)	369, 554
BmsI	GCATC	3 cut(s)	13, 281, 633
BpuEI	CTTGAG	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	2 cut(s)	110, 219
BsaJI	CCNNGG	3 cut(s)	367, 552, 553
BsaWI	WCCGGW	2 cut(s)	101, 115
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	3 cut(s)	163, 353, 488
BseBI	CCWGG	2 cut(s)	369, 554
BseDI	CCNNGG	3 cut(s)	367, 552, 553
BseGI	GGATG	2 cut(s)	389, 648
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	3 cut(s)	163, 353, 488
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	256, 263, 496
BsgI	GTGCAG	4 cut(s)	270, 300, 306, 312
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	418, 484
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	102, 116
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	110, 219
BsnI	GGCC	2 cut(s)	418, 484
Bso31I	GGTCTC	2 cut(s)	110, 219
BsoBI	CYCGRG	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	13, 145, 629
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	418, 484
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	73, 417
BspMI	ACCTGC	5 cut(s)	292, 322, 328, 334, 614
BspPI	GGATC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	2 cut(s)	110, 219
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	163, 353, 488
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	367, 552, 553
BssMI	GATC	3 cut(s)	13, 145, 629
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	369, 554
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	194, 333
BstF5I	GGATG	2 cut(s)	389, 648
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 127
BstKTI	GATC	3 cut(s)	16, 148, 632
BstMAI	GTCTC	2 cut(s)	110, 219
BstMBI	GATC	3 cut(s)	13, 145, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	2 cut(s)	369, 554
BstNSI	RCATGY	2 cut(s)	143, 598
BstSCI	CCNGG	2 cut(s)	367, 552
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	256, 263, 496
BstX2I	RGATCY	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	629
BsuRI	GGCC	2 cut(s)	418, 484
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	389, 648
BtsIMutI	CAGTG	3 cut(s)	204, 495, 570
BveI	ACCTGC	5 cut(s)	292, 322, 328, 334, 614
CfoI	GCGC	2 cut(s)	74, 127
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	4 cut(s)	49, 118, 263, 416
CseI	GACGC	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	309
CspAI	ACCGGT	1 cut(s)	115
CviAII	CATG	2 cut(s)	140, 595
CviJI	RGCY	8 cut(s)	41, 80, 98, 254, 269, 418, 455, 484
CviKI_1	RGCY	8 cut(s)	41, 80, 98, 254, 269, 418, 455, 484
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	194, 333
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	3 cut(s)	15, 147, 631
DpnII	GATC	3 cut(s)	13, 145, 629
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco31I	GGTCTC	2 cut(s)	110, 219
Eco47I	GGWCC	3 cut(s)	49, 118, 263
Eco88I	CYCGRG	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	367, 552
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
FaeI	CATG	2 cut(s)	143, 598
FaiI	YATR	6 cut(s)	133, 141, 259, 261, 443, 596
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	2 cut(s)	139, 594
Fnu4HI	GCNGC	3 cut(s)	252, 270, 510
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	3 cut(s)	252, 270, 510
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	2 cut(s)	73, 126
GluI	GCNGC	3 cut(s)	252, 270, 510
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	418, 484
HapII	CCGG	2 cut(s)	102, 116
HgaI	GACGC	1 cut(s)	532
HhaI	GCGC	2 cut(s)	74, 127
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	143, 598
Hin6I	GCGC	2 cut(s)	72, 125
HinP1I	GCGC	2 cut(s)	72, 125
HindIII	AAGCTT	1 cut(s)	453
HpaII	CCGG	2 cut(s)	102, 116
Hpy166II	GTNNAC	2 cut(s)	311, 581
Hpy188I	TCNGA	3 cut(s)	35, 150, 474
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	311, 581
Hpy99I	CGWCG	2 cut(s)	39, 86
HpyAV	CCTTC	2 cut(s)	241, 612
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	7 cut(s)	143, 272, 287, 317, 323, 329, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	2 cut(s)	194, 333
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	143, 598
HspAI	GCGC	2 cut(s)	72, 125
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	13, 145, 629
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	3 cut(s)	256, 263, 496
LweI	GCATC	3 cut(s)	13, 281, 633
MaeIII	GTNAC	3 cut(s)	202, 379, 634
MalI	GATC	3 cut(s)	15, 147, 631
MboI	GATC	3 cut(s)	13, 145, 629
MboII	GAAGA	5 cut(s)	82, 188, 351, 420, 528
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	3 cut(s)	63, 240, 298
Mly113I	GGCGCC	1 cut(s)	72
MmeI	TCCRAC	2 cut(s)	58, 592
MnlI	CCTC	7 cut(s)	109, 144, 342, 403, 474, 504, 608
MseI	TTAA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	102, 116
MspR9I	CCNGG	2 cut(s)	369, 554
MvaI	CCWGG	2 cut(s)	369, 554
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	490
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	3 cut(s)	13, 145, 629
NlaIII	CATG	2 cut(s)	143, 598
NlaIV	GGNNCC	2 cut(s)	73, 417
NmuCI	GTSAC	2 cut(s)	202, 634
NsbI	TGCGCA	1 cut(s)	126
NspI	RCATGY	2 cut(s)	143, 598
PaeR7I	CTCGAG	1 cut(s)	589
PaqCI	CACCTGC	4 cut(s)	322, 328, 334, 614
PasI	CCCWGGG	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	253, 271, 511
PluTI	GGCGCC	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	367, 552
PspGI	CCWGG	2 cut(s)	367, 552
PspN4I	GGNNCC	2 cut(s)	73, 417
PspPI	GGNCC	4 cut(s)	49, 118, 263, 416
PspXI	VCTCGAGB	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	3 cut(s)	252, 270, 510
Sau3AI	GATC	3 cut(s)	13, 145, 629
Sau96I	GGNCC	4 cut(s)	49, 118, 263, 416
ScrFI	CCNGG	2 cut(s)	369, 554
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	13, 281, 633
SfoI	GGCGCC	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	589
SinI	GGWCC	3 cut(s)	49, 118, 263
SlaI	CTCGAG	1 cut(s)	589
SmlI	CTYRAG	2 cut(s)	465, 589
SmoI	CTYRAG	2 cut(s)	465, 589
Sse9I	AATT	3 cut(s)	63, 240, 298
SsiI	CCGC	1 cut(s)	52
SspDI	GGCGCC	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	367, 552
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	4 cut(s)	12, 21, 61, 590
TasI	AATT	3 cut(s)	63, 240, 298
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	3 cut(s)	211, 495, 570
TseFI	GTSAC	2 cut(s)	202, 634
TseI	GCWGC	3 cut(s)	251, 269, 509
Tsp45I	GTSAC	2 cut(s)	202, 634
TspDTI	ATGAA	1 cut(s)	458
TspRI	CASTG	3 cut(s)	211, 495, 570
VpaK11BI	GGWCC	3 cut(s)	49, 118, 263
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	2 cut(s)	143, 598
XhoI	CTCGAG	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.