Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004010

Physical Location & Seq

Genomic Coordinates Forward (+)

6797205 .. 6798657

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCTCCCCGAGTTGAGAGTCCAACAACTGCTTCTTCACCTGAAGTTGATGTTAAGTCAGAAAAGCCTCAAAGTGCGGATGACAAGGTTGCATCATATGATAAAATGGGATGAATATAAGTCAGCAAAAAGTGCTCTGAACAATCCATTTGCCATCAGTACTTTTGGAAGCCCGTCTAGAGAATTTTCAAATTCTAAATATGGAAAGATCAACCGGTGCAAATGCCTCACCCGTCATAAGGAATCTCAAGGTGATGATCATGGGGGTGCTGGGTCTGTGTTTTCTGGTGACAAGGGTTTCGTTGAACCAGCATGGGGGACATTTGACACTAATGATGACGTCGACTCAGTGTTGAATGCAGTTAGTACCACCAAGCATGGTTTCAAGGTTCCAGTGAATCTACTTTCCTTTCTAATAACATGTCGGTTACGTAGCACTTTGAAACTTTTTGTTTTTGTTCCGGACTGGGTCATCACAAGGAGATGGCTTTTCTTAGAAGAGCCACATTTTACTTTCGATGATTTTGTTCCTAGCACCCCATTCTCAGCCTTCAGTTCTCGATATTCACCGCCAGGGGTCGTGGTTTTCCAACATTTGATGACATCCCAGACTCTTTTGGCTCTTTGGCACCATTTAGTTTGTCACTGGACAGTCAAACTCCAAGAAGAGACTCGAACCCCTTTCCAATCTTCGGTATTTTTTTCGGGTCTTCATCGCCATTTTGGACATCATTACACAGTCAAACTCCAAGAAGAGACTCGGACTCATTTGGGCCTTCTCCATTTAGGACATCATTTGACGGCCAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

271

Amino Acids

31.03

Weight (kDa)

9.49

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21630 AT1G21630 AT1G21630 AT1G21630
fragaria_vesca	FvH4_2g16750 FvH4_2g16750 FvH4_2g16750
malus_domestica	MD04G1035400.v1.1 MD05G1135500.v1.1 MD05G1137000.v1.1 MD10G1140800.v1.1
prunus_persica	Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1
pyrus_communis	pycom03g08400 pycom05g13210 pycom05g13310 pycom10g11940 pycom10g11970
rosa_chinensis	RchiOBHm_Chr6g0280871
rosa_laevigata	RLG00000013024
rosa_multiflora	Rmu_co8142976.1_g000001 Rmu_co8285335.1_g000001 Rmu_sc0004772.1_g000002 Rmu_sc0026236.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187540
rosa_rugosa	Rorug06G0135900
rosa_samantha	Rh6AG248700 Rh6BG250400 Rh6BG250600 Rh6CG251400 Rh6DG243100
rosa_wichuraiana	Rw6G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	2 cut(s)	76, 569
AcoI	YGGCCR	1 cut(s)	801
AcsI	RAATTY	2 cut(s)	182, 190
AcuI	CTGAAG	2 cut(s)	62, 535
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	2 cut(s)	160, 367
AfiI	CCNNNNNNNGG	3 cut(s)	238, 314, 691
AflIII	ACRYGT	1 cut(s)	419
AgeI	ACCGGT	1 cut(s)	213
AgsI	TTSAA	5 cut(s)	189, 305, 355, 385, 442
AjnI	CCWGG	1 cut(s)	571
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 365, 397
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	662, 749
Ama87I	CYCGRG	1 cut(s)	8
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	2 cut(s)	772, 801
ApoI	RAATTY	2 cut(s)	182, 190
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AsiGI	ACCGGT	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	5 cut(s)	29, 220, 263, 299, 558
AvaI	CYCGRG	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	2 cut(s)	161, 477
BciT130I	CCWGG	1 cut(s)	573
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	662, 749
BfaI	CTAG	2 cut(s)	177, 531
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	573
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	2 cut(s)	390, 629
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	1 cut(s)	475
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	572
BsaWI	WCCGGW	2 cut(s)	213, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 314, 691
Bse118I	RCCGGY	1 cut(s)	213
Bse1I	ACTGG	3 cut(s)	392, 470, 650
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	3 cut(s)	84, 115, 602
BseLI	CCNNNNNNNGG	3 cut(s)	238, 314, 691
BseMII	CTCAG	2 cut(s)	360, 558
BseNI	ACTGG	3 cut(s)	392, 470, 650
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	774, 803
BshNI	GGYRCC	1 cut(s)	627
BshTI	ACCGGT	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	214, 461
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	238, 314, 691
BsmAI	GTCTC	2 cut(s)	662, 749
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	774, 803
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	207, 256
BspACI	CCGC	2 cut(s)	76, 569
BspANI	GGCC	2 cut(s)	774, 803
BspCNI	CTCAG	2 cut(s)	359, 557
BspEI	TCCGGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	390, 629
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	392, 470, 650
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	2 cut(s)	207, 256
BssNI	GRCGYC	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	652, 739
Bst6I	CTCTTC	3 cut(s)	492, 660, 747
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	346, 493, 544
BstF5I	GGATG	3 cut(s)	84, 115, 602
BstKTI	GATC	2 cut(s)	210, 259
BstMAI	GTCTC	2 cut(s)	662, 749
BstMBI	GATC	2 cut(s)	207, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	571
BstSNI	TACGTA	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	774, 803
BtgZI	GCGATG	1 cut(s)	698
BtsCI	GGATG	3 cut(s)	84, 115, 602
BtsIMutI	CAGTG	3 cut(s)	354, 399, 643
Cfr10I	RCCGGY	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	159, 366
CspAI	ACCGGT	1 cut(s)	213
CviAII	CATG	4 cut(s)	260, 312, 377, 420
CviJI	RGCY	8 cut(s)	66, 171, 487, 502, 548, 620, 774, 803
CviKI_1	RGCY	8 cut(s)	66, 171, 487, 502, 548, 620, 774, 803
CviQI	GTAC	2 cut(s)	159, 366
DdeI	CTNAG	3 cut(s)	346, 493, 544
DpnI	GATC	2 cut(s)	209, 258
DpnII	GATC	2 cut(s)	207, 256
EaeI	YGGCCR	1 cut(s)	801
Eam1104I	CTCTTC	3 cut(s)	492, 660, 747
EarI	CTCTTC	3 cut(s)	492, 660, 747
Eco105I	TACGTA	1 cut(s)	431
Eco57I	CTGAAG	2 cut(s)	62, 535
Eco88I	CYCGRG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	571
FaeI	CATG	4 cut(s)	263, 315, 380, 423
FaiI	YATR	9 cut(s)	96, 98, 117, 201, 237, 261, 313, 378, 421
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	4 cut(s)	259, 311, 376, 419
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	342
FokI	GGATG	3 cut(s)	91, 122, 589
FspBI	CTAG	2 cut(s)	177, 531
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	774, 803
HapII	CCGG	2 cut(s)	214, 461
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	4 cut(s)	263, 315, 380, 423
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	8 cut(s)	18, 242, 344, 397, 610, 670, 757, 763
HpaII	CCGG	2 cut(s)	214, 461
HphI	GGTGA	5 cut(s)	29, 220, 263, 299, 558
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	60, 138, 762
Hpy188III	TCNNGA	3 cut(s)	177, 461, 558
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	559, 785
HpyCH4III	ACNGT	2 cut(s)	652, 739
HpyCH4IV	ACGT	2 cut(s)	339, 430
HpyCH4V	TGCA	3 cut(s)	91, 219, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	346, 493, 544
HpySE526I	ACGT	2 cut(s)	339, 430
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	4 cut(s)	263, 315, 380, 423
Kpn2I	TCCGGA	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	207, 256
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	9
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	177, 531
MaeII	ACGT	2 cut(s)	339, 430
MaeIII	GTNAC	3 cut(s)	287, 426, 641
MalI	GATC	2 cut(s)	209, 258
MboI	GATC	2 cut(s)	207, 256
MboII	GAAGA	6 cut(s)	26, 509, 677, 681, 701, 764
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	2 cut(s)	182, 190
MlyI	GAGTC	6 cut(s)	27, 338, 604, 664, 751, 757
MmeI	TCCRAC	2 cut(s)	46, 613
MnlI	CCTC	2 cut(s)	77, 236
MroI	TCCGGA	1 cut(s)	460
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	214, 461
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	2 cut(s)	207, 256
NlaIII	CATG	4 cut(s)	263, 315, 380, 423
NlaIV	GGNNCC	2 cut(s)	390, 629
NmuCI	GTSAC	2 cut(s)	287, 641
NspI	RCATGY	1 cut(s)	423
PciI	ACATGT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	242, 397
PflFI	GACNNNGTC	1 cut(s)	467
PinAI	ACCGGT	1 cut(s)	213
PleI	GAGTC	6 cut(s)	26, 338, 604, 664, 751, 757
PpsI	GAGTC	6 cut(s)	26, 338, 604, 664, 751, 757
Ppu21I	YACGTR	1 cut(s)	431
PscI	ACATGT	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	390, 629
PspPI	GGNCC	1 cut(s)	772
PsyI	GACNNNGTC	1 cut(s)	467
RsaI	GTAC	2 cut(s)	160, 367
RsaNI	GTAC	2 cut(s)	159, 366
RseI	CAYNNNNRTG	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	53
Sau3AI	GATC	2 cut(s)	207, 256
Sau96I	GGNCC	1 cut(s)	772
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	6 cut(s)	27, 338, 604, 664, 751, 757
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	6 cut(s)	42, 89, 253, 342, 390, 433
SfaNI	GCATC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SnaBI	TACGTA	1 cut(s)	431
Sse9I	AATT	2 cut(s)	182, 190
SsiI	CCGC	2 cut(s)	76, 569
SspMI	CTAG	2 cut(s)	177, 531
StyD4I	CCNGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	652, 739
TaiI	ACGT	2 cut(s)	342, 433
TaqI	TCGA	4 cut(s)	342, 516, 559, 673
TasI	AATT	2 cut(s)	182, 190
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	242, 397
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	3 cut(s)	354, 399, 650
TseFI	GTSAC	2 cut(s)	287, 641
Tsp45I	GTSAC	2 cut(s)	287, 641
TspDTI	ATGAA	2 cut(s)	126, 701
TspRI	CASTG	3 cut(s)	354, 399, 650
Tth111I	GACNNNGTC	1 cut(s)	467
XapI	RAATTY	2 cut(s)	182, 190
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	2 cut(s)	177, 531
ZraI	GACGTC	1 cut(s)	340
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.