Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285335.1

Orthogroup ID

OG0004010

Physical Location & Seq

Genomic Coordinates Forward (+)

21 .. 776

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtcaaatgattgggttggaggaagggcaggtggatctgtgacagggatgcactcacaagtcttaaatagagggatcactccatctgcaacacaggatggatttgggctggcaacatctggaccaacagtttccgcactctctagaccacaggcaccttctggcatgacaccatcaggaccacctgctaaggattccaaatcattaaatgtttctgggaatggctttgctcctgactcatcttttggagatgatgtgttttctgcaatcccatctcaaccaaagcaaaacacttctacaaattcatttccttctggcagcataccagtctcatcagccgttgtaccagtatctgccgggccccaatcatcttctcatgcatttccgggtggcagtgttccattctcatcggccattgttccagttacttctgggcctcaatcttcagagaggccaagtaccgtttcacccatgcagcctgttggtggccaacctcagcagccccggtcatttgcatcatcaaaccagcaggtccccacccagactacaacatctatcacatctggagtttcatatggagcagggaactctgcttctggtcaatcctggccaaggatgactcaaactgatgttcagaagtactcaaatatttttgtgaaagtcgacacagacagagatgggaaaatcactggtgatcaagctcgtgacttatttttgaaatggggattgccaagaggtggggatatttgcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

251

Amino Acids

25.59

Weight (kDa)

8.85

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21630 AT1G21630 AT1G21630 AT1G21630
fragaria_vesca	FvH4_2g16750 FvH4_2g16750 FvH4_2g16750
malus_domestica	MD04G1035400.v1.1 MD05G1135500.v1.1 MD05G1137000.v1.1 MD10G1140800.v1.1
prunus_persica	Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1
pyrus_communis	pycom03g08400 pycom05g13210 pycom05g13310 pycom10g11940 pycom10g11970
rosa_chinensis	RchiOBHm_Chr6g0280871
rosa_laevigata	RLG00000013024
rosa_multiflora	Rmu_co8142976.1_g000001 Rmu_co8285335.1_g000001 Rmu_sc0004772.1_g000002 Rmu_sc0026236.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187540
rosa_rugosa	Rorug06G0135900
rosa_samantha	Rh6AG248700 Rh6BG250400 Rh6BG250600 Rh6CG251400 Rh6DG243100
rosa_wichuraiana	Rw6G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	20, 193
Acc36I	ACCTGC	3 cut(s)	20, 193, 520
AccB1I	GGYRCC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	2 cut(s)	43, 83
AcoI	YGGCCR	3 cut(s)	411, 487, 608
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	345, 460, 641
AfiI	CCNNNNNNNGG	3 cut(s)	485, 612, 737
AgsI	TTSAA	1 cut(s)	718
AjnI	CCWGG	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
AluBI	AGCT	1 cut(s)	701
AluI	AGCT	1 cut(s)	701
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	43, 83
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	6 cut(s)	359, 411, 434, 452, 487, 608
ApaI	GGGCCC	1 cut(s)	363
ApeKI	GCWGC	3 cut(s)	318, 475, 499
ApoI	RAATTY	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	6 cut(s)	122, 179, 359, 360, 434, 532
AsuC2I	CCSGG	3 cut(s)	358, 387, 505
AsuHPI	GGTGA	2 cut(s)	459, 704
AvaII	GGWCC	3 cut(s)	122, 179, 532
BaeGI	GKGCMC	1 cut(s)	363
BalI	TGGCCA	2 cut(s)	489, 610
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	363
BauI	CACGAG	1 cut(s)	702
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	330, 487, 511
BccI	CCATC	5 cut(s)	91, 92, 181, 280, 671
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	607
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	3 cut(s)	358, 387, 505
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	144
BfuAI	ACCTGC	3 cut(s)	20, 193, 520
BisI	GCNGC	3 cut(s)	319, 476, 500
BlsI	GCNGC	3 cut(s)	320, 477, 501
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	4 cut(s)	358, 387, 505, 607
Bme18I	GGWCC	3 cut(s)	122, 179, 532
BmgT120I	GGNCC	6 cut(s)	122, 179, 359, 360, 434, 532
BmiI	GGNNCC	4 cut(s)	156, 361, 362, 534
BmrFI	CCNGG	4 cut(s)	358, 387, 505, 607
BmsI	GCATC	2 cut(s)	39, 524
BpmI	CTGGAG	1 cut(s)	585
Bpu10I	CCTNAGC	2 cut(s)	189, 495
BpuMI	CCSGG	3 cut(s)	358, 387, 505
BsaJI	CCNNGG	2 cut(s)	503, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	485, 612, 737
Bse1I	ACTGG	4 cut(s)	326, 347, 422, 694
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	2 cut(s)	503, 611
BseGI	GGATG	3 cut(s)	54, 103, 621
BseLI	CCNNNNNNNGG	3 cut(s)	485, 612, 737
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	4 cut(s)	326, 347, 422, 694
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	330, 487, 511
BshFI	GGCC	6 cut(s)	361, 413, 436, 454, 489, 610
BshNI	GGYRCC	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	357, 386, 505
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	485, 612, 737
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	6 cut(s)	361, 413, 436, 454, 489, 610
Bsp120I	GGGCCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	35, 75, 694
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	6 cut(s)	361, 413, 436, 454, 489, 610
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	156, 361, 362, 534
BspMI	ACCTGC	3 cut(s)	20, 193, 520
BspPI	GGATC	2 cut(s)	43, 83
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	4 cut(s)	326, 347, 422, 694
BssECI	CCNNGG	2 cut(s)	503, 611
BssMI	GATC	3 cut(s)	35, 75, 694
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	611
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	2 cut(s)	130, 463
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	189, 495
BstENI	CCTNNNNNAGG	1 cut(s)	610
BstF5I	GGATG	3 cut(s)	54, 103, 621
BstKTI	GATC	3 cut(s)	38, 78, 697
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	3 cut(s)	35, 75, 694
BstNI	CCWGG	1 cut(s)	607
BstSCI	CCNGG	4 cut(s)	356, 385, 503, 605
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	330, 487, 511
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	6 cut(s)	361, 413, 436, 454, 489, 610
BtsCI	GGATG	3 cut(s)	54, 103, 621
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	400, 687
BveI	ACCTGC	3 cut(s)	20, 193, 520
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	353
Cfr13I	GGNCC	6 cut(s)	122, 179, 359, 360, 434, 532
Csp6I	GTAC	3 cut(s)	344, 459, 640
CviAII	CATG	3 cut(s)	166, 377, 472
CviQI	GTAC	3 cut(s)	344, 459, 640
DdeI	CTNAG	2 cut(s)	189, 495
DpnI	GATC	3 cut(s)	37, 77, 696
DpnII	GATC	3 cut(s)	35, 75, 694
EaeI	YGGCCR	3 cut(s)	411, 487, 608
Eco130I	CCWWGG	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	3 cut(s)	122, 179, 532
Eco57I	CTGAAG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	610
EcoO109I	RGGNCCY	2 cut(s)	360, 532
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	3 cut(s)	169, 380, 475
FaiI	YATR	6 cut(s)	167, 323, 378, 473, 574, 576
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	3 cut(s)	165, 376, 471
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	319, 476, 500
FokI	GGATG	3 cut(s)	61, 110, 628
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	3 cut(s)	319, 476, 500
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	3 cut(s)	319, 476, 500
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	6 cut(s)	361, 413, 436, 454, 489, 610
HapII	CCGG	3 cut(s)	357, 386, 505
Hin1II	CATG	3 cut(s)	169, 380, 475
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	3 cut(s)	194, 236, 619
HpaII	CCGG	3 cut(s)	357, 386, 505
HphI	GGTGA	2 cut(s)	459, 704
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	2 cut(s)	448, 636
Hpy188III	TCNNGA	6 cut(s)	120, 144, 177, 233, 564, 704
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	3 cut(s)	18, 168, 321
HpyCH4III	ACNGT	2 cut(s)	130, 463
HpyCH4V	TGCA	7 cut(s)	52, 89, 266, 380, 475, 515, 750
HpyF3I	CTNAG	2 cut(s)	189, 495
Hsp92II	CATG	3 cut(s)	169, 380, 475
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	3 cut(s)	35, 75, 694
LmnI	GCTCC	2 cut(s)	235, 578
Lsp1109I	GCAGC	3 cut(s)	330, 487, 511
LweI	GCATC	2 cut(s)	39, 524
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	40, 424, 704
MalI	GATC	3 cut(s)	37, 77, 696
MboI	GATC	3 cut(s)	35, 75, 694
MboII	GAAGA	2 cut(s)	363, 435
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	2 cut(s)	489, 610
MluCI	AATT	1 cut(s)	301
MluNI	TGGCCA	2 cut(s)	489, 610
MlyI	GAGTC	2 cut(s)	230, 613
MnlI	CCTC	6 cut(s)	14, 65, 444, 447, 504, 728
Mox20I	TGGCCA	2 cut(s)	489, 610
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	2 cut(s)	489, 610
MseI	TTAA	3 cut(s)	65, 206, 754
Msp20I	TGGCCA	2 cut(s)	489, 610
MspI	CCGG	3 cut(s)	357, 386, 505
MspR9I	CCNGG	4 cut(s)	358, 387, 505, 607
MvaI	CCWGG	1 cut(s)	607
NciI	CCSGG	3 cut(s)	358, 387, 505
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	3 cut(s)	35, 75, 694
NlaIII	CATG	3 cut(s)	169, 380, 475
NlaIV	GGNNCC	4 cut(s)	156, 361, 362, 534
NmuCI	GTSAC	2 cut(s)	40, 704
NsiI	ATGCAT	1 cut(s)	382
PaqCI	CACCTGC	2 cut(s)	20, 193
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	3 cut(s)	320, 477, 501
PleI	GAGTC	2 cut(s)	230, 613
PpsI	GAGTC	2 cut(s)	230, 613
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	4 cut(s)	156, 361, 362, 534
PspOMI	GGGCCC	1 cut(s)	359
PspPI	GGNCC	6 cut(s)	122, 179, 359, 360, 434, 532
PspPPI	RGGWCCY	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	3 cut(s)	345, 460, 641
RsaNI	GTAC	3 cut(s)	344, 459, 640
SalI	GTCGAC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	65, 206, 754
SatI	GCNGC	3 cut(s)	319, 476, 500
Sau3AI	GATC	3 cut(s)	35, 75, 694
Sau96I	GGNCC	6 cut(s)	122, 179, 359, 360, 434, 532
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	2 cut(s)	230, 613
ScrFI	CCNGG	4 cut(s)	358, 387, 505, 607
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	7 cut(s)	34, 160, 187, 496, 534, 703, 739
SfaNI	GCATC	2 cut(s)	39, 524
SinI	GGWCC	3 cut(s)	122, 179, 532
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	4 cut(s)	356, 385, 503, 605
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	130, 463
TaqI	TCGA	1 cut(s)	663
TasI	AATT	1 cut(s)	301
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	65, 206, 754
Tru9I	TTAA	3 cut(s)	65, 206, 754
TscAI	CASTG	2 cut(s)	400, 694
TseFI	GTSAC	2 cut(s)	40, 704
TseI	GCWGC	3 cut(s)	318, 475, 499
Tsp45I	GTSAC	2 cut(s)	40, 704
TspDTI	ATGAA	2 cut(s)	294, 561
TspRI	CASTG	2 cut(s)	400, 694
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	3 cut(s)	122, 179, 532
XagI	CCTNNNNNAGG	1 cut(s)	610
XapI	RAATTY	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	1 cut(s)	144
ZrmI	AGTACT	1 cut(s)	641
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.