Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8142976.1

Orthogroup ID

OG0004010

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 642

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8142976.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

atatgggcacatgcagatcggaggcagactggttttcttggtcgggaagagttctacaatgctcttagacttgtcactgtggcacaaagtaagcgagaccttacccccgaaattgtgaaggcagctttatatggtccagctgcatctaaaatacctgcaccacaaataaatttgacgggtacacctgcacctgcacctgcacctcagttcagttctgctccaccagtatcttccaccccaggtggtgctgttactcccacatcctcccaaaatcttgggttaagggggccacaagtttcttcaaatgtaaatatgaaccaccaagctttcctttctcaaggtcagacaatgaggccaccagtgcctcaatctactactgctgcttcccaactgacgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

132

Amino Acids

13.84

Weight (kDa)

10.5

Isoelectric Point (pI)

64.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21630 AT1G21630 AT1G21630 AT1G21630
fragaria_vesca	FvH4_2g16750 FvH4_2g16750 FvH4_2g16750
malus_domestica	MD04G1035400.v1.1 MD05G1135500.v1.1 MD05G1137000.v1.1 MD10G1140800.v1.1
prunus_persica	Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1 Prupe.8G179600_v2.0.a1
pyrus_communis	pycom03g08400 pycom05g13210 pycom05g13310 pycom10g11940 pycom10g11970
rosa_chinensis	RchiOBHm_Chr6g0280871
rosa_laevigata	RLG00000013024
rosa_multiflora	Rmu_co8142976.1_g000001 Rmu_co8285335.1_g000001 Rmu_sc0004772.1_g000002 Rmu_sc0026236.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187540
rosa_rugosa	Rorug06G0135900
rosa_samantha	Rh6AG248700 Rh6BG250400 Rh6BG250600 Rh6CG251400 Rh6DG243100
rosa_wichuraiana	Rw6G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	193, 199, 205
Acc36I	ACCTGC	4 cut(s)	163, 193, 199, 205
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	125, 140, 326
AluI	AGCT	3 cut(s)	125, 140, 326
Alw26I	GTCTC	1 cut(s)	90
AoxI	GGCC	2 cut(s)	287, 353
ApeKI	GCWGC	3 cut(s)	122, 140, 380
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	134, 287
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	127, 134, 367
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	90
BfuAI	ACCTGC	4 cut(s)	163, 193, 199, 205
BisI	GCNGC	3 cut(s)	123, 141, 381
BlsI	GCNGC	3 cut(s)	124, 142, 382
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 287
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	34, 224, 359
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	3 cut(s)	34, 224, 359
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	3 cut(s)	127, 134, 367
BsgI	GTGCAG	4 cut(s)	141, 171, 177, 183
BshFI	GGCC	2 cut(s)	289, 355
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	289, 355
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	289, 355
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	288
BspMI	ACCTGC	4 cut(s)	163, 193, 199, 205
BspTNI	GGTCTC	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	34, 224, 359
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	65, 204
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	127, 134, 367
BstXI	CCANNNNNNTGG	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	289, 355
BtsCI	GGATG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	75, 366
BveI	ACCTGC	4 cut(s)	163, 193, 199, 205
Cfr13I	GGNCC	2 cut(s)	134, 287
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	5 cut(s)	125, 140, 289, 326, 355
CviKI_1	RGCY	5 cut(s)	125, 140, 289, 326, 355
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	65, 204
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	14
FaiI	YATR	5 cut(s)	4, 12, 130, 132, 314
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	123, 141, 381
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	3 cut(s)	123, 141, 381
GluI	GCNGC	3 cut(s)	123, 141, 381
HaeIII	GGCC	2 cut(s)	289, 355
Hin1II	CATG	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	21, 345
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	6 cut(s)	14, 143, 158, 188, 194, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	2 cut(s)	65, 204
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	3 cut(s)	127, 134, 367
LweI	GCATC	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	73, 250
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	59, 222, 291
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	111, 169
MnlI	CCTC	5 cut(s)	15, 213, 274, 345, 375
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	361
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	14
PaqCI	CACCTGC	3 cut(s)	193, 199, 205
PkrI	GCNGC	3 cut(s)	124, 142, 382
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	134, 287
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	123, 141, 381
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	2 cut(s)	134, 287
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	1 cut(s)	152
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	111, 169
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	79
TasI	AATT	2 cut(s)	111, 169
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	2 cut(s)	82, 366
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	122, 140, 380
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	2 cut(s)	82, 366
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.