Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015400

Physical Location & Seq

Genomic Coordinates Reverse (-)

7926147 .. 7928653

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1060600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGAATCTCTTCACCAGGAACAGACCCACAACTCGACCATGGCCTCTCAGAAGACACTCCTCCTCCGCCTCCCCTCTTCTCTACCTGACCCTCCTCTTCTCCCTCCTCCTCTTCCTCTCCTACTTCTTCTCTCTCATTCCCGATTCCCTCTTCCTCAAGACCTCACTTTCCATTTCCCCAAATTGCCGCTCCCTCGGAGGACAAAAGTTCCTCTGGTACGCTCCCCACAGTGGCTTCAGCAACCAGCTTACTGAGTTCAAGAACGCCCTTCTCATGGCTGCCATTCTGAACCGGACCTTGGTCGTCCCTCCGGTTCTCGATCACCACGCGGTTGCTCTCGGCAGTTGCCCAAAGTTTCGGGTTTTGAGCCCTGATGAGATCAGGATTTCGGTCTGGAATCATACGGTTGAGCTCATTCGTAGTGGGAGGTATGTTTCCATGGCTGACATTGTTGATATATCATCATTAGTTTCTTCTTCGTTAGTTCGAGTTGTAGATTTCAGGGTTTTCTTATCCTCATGGTGCAATGTGAATGTAGATTTTGCTTGCAACAATGAGTTGGATGCACGGGCCTCTGTGTTTGATAGACTACAGCAATGTAGGTCTCTGCTATCTGGGATGGATGGCGATGCAAAGTGTTCATATGCTGTTAATGAGGACTGCAGAACTACCGTTTGGACATACCAAAATGGTAATGAGGACGGGGTATTGGATTCTTTCCAGCCGGATGAACAACTAAAGAAGAAAAAGAAAATTTCATATGTTAGGAAGCGGCGAAATGTATATAACGCTCTTGGACCTGGTTCTGAAGCTGAATCGGCTATTCTGCTAGCATTTGGGAGTCTTTTCACTGCTCCTTACAAAGGTTCGCAGCTACACATTAGTATCCCTGAAGCTCCGAGTGATCGAAGGATACAAACTTTGATTGACAAGATTGAATTCCTTCGATTTGCTCCAGAAATCGTAAGTGCAGGAAAGAAGTATGCTTATGATACTATAAAGGCTCCTTTTCTTTGTGCACAGCTCAGATTGCTAGACGGGCAGTTCAAGAACCACTGGAATGCTACATTTTTGAAGTTAAAACAAACACTGGATGCTTTGACACAGAGCCCTCCCCCTATTCATATTTTTGTGATGACTGATCTTCCTGAAAGTAACTGGACAGGAACTTATTTGGGGGAATTGGTTGAAGATTCGCTTCAGTTTAAACTGTTCTTTCTGAAAGAAAAAGACGAGTTGATAATACAAACTGCTAAACAAATTGTGGATGCAAGTCATGGCTTGAAGCTTGGGACTGTCCTGAAGAATCATGATGGAACTGGTCAGTTTAAGAAGGTTTGCCCTCCAGGATTGCCTGATGTTCTTCTATACATAGAGCAAACAATTTGTAGTTGTGCTTCTCTTGGATTTGTTGGGACTGCAGGGTCAACTATTGCGGACATTATAGAGTCGATGAGGACGTTTGGTGTATGTTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

494

Amino Acids

55.1

Weight (kDa)

8.61

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17430
fragaria_vesca	FvH4_5g19490
malus_domestica	MD04G1060600.v1.1
prunus_persica	Prupe.5G065000_v2.0.a1
pyrus_communis	pycom04g05440 pycom06g04540
rosa_chinensis	RchiOBHm_Chr7g0204071
rosa_laevigata	RLG00000003490
rosa_multiflora	Rmu_co8337455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253380
rosa_rugosa	Rorug07G0080400
rosa_samantha	Rh7AG210400 Rh7BG209000 Rh7CG222800 Rh7DG217100
rosa_wichuraiana	Rw7G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1423
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	1 cut(s)	329
AciI	CCGC	5 cut(s)	66, 187, 329, 772, 1436
AcsI	RAATTY	2 cut(s)	753, 938
AcuI	CTGAAG	5 cut(s)	220, 828, 912, 1184, 1322
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	230, 274, 298, 863
AgsI	TTSAA	6 cut(s)	259, 938, 1048, 1075, 1190, 1285
AjnI	CCWGG	3 cut(s)	14, 799, 1345
AjuI	GAANNNNNNNTTGG	4 cut(s)	281, 313, 658, 690
AluBI	AGCT	8 cut(s)	247, 412, 812, 874, 896, 1024, 1288, 1479
AluI	AGCT	8 cut(s)	247, 412, 812, 874, 896, 1024, 1288, 1479
Alw21I	GWGCWC	2 cut(s)	414, 1021
Alw26I	GTCTC	1 cut(s)	609
Alw44I	GTGCAC	1 cut(s)	1017
AoxI	GGCC	2 cut(s)	41, 570
ApaLI	GTGCAC	1 cut(s)	1017
ApeKI	GCWGC	2 cut(s)	278, 871
ApoI	RAATTY	2 cut(s)	753, 938
Asp700I	GAANNNNTTC	2 cut(s)	8, 942
AspS9I	GGNCC	3 cut(s)	294, 570, 797
AsuHPI	GGTGA	2 cut(s)	4, 314
AsuNHI	GCTAGC	1 cut(s)	829
AvaII	GGWCC	2 cut(s)	294, 797
BaeGI	GKGCMC	1 cut(s)	1021
BaeI	ACNNNNGTAYC	2 cut(s)	868, 901
BanII	GRGCYC	3 cut(s)	371, 414, 1112
BarI	GAAGNNNNNNTAC	2 cut(s)	1381, 1413
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	414, 1021
BbvI	GCAGC	2 cut(s)	265, 883
BccI	CCATC	3 cut(s)	613, 617, 1307
BciT130I	CCWGG	3 cut(s)	16, 801, 1347
BciVI	GTATCC	2 cut(s)	896, 906
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	3 cut(s)	830, 1034, 1476
BfmI	CTRYAG	3 cut(s)	590, 661, 1419
BfuI	GTATCC	2 cut(s)	896, 906
BisI	GCNGC	4 cut(s)	187, 279, 773, 872
BlsI	GCNGC	4 cut(s)	188, 280, 774, 873
Bme1390I	CCNGG	3 cut(s)	16, 801, 1347
Bme18I	GGWCC	2 cut(s)	294, 797
BmgT120I	GGNCC	3 cut(s)	294, 570, 797
BmiI	GGNNCC	1 cut(s)	1005
BmrFI	CCNGG	3 cut(s)	16, 801, 1347
BmsI	GCATC	4 cut(s)	553, 619, 1084, 1258
BmtI	GCTAGC	1 cut(s)	833
BoxI	GACNNNNGTC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	2 cut(s)	939, 1329
BpuEI	CTTGAG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	4 cut(s)	38, 193, 297, 438
BsaWI	WCCGGW	2 cut(s)	291, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 274, 298, 863
Bse1I	ACTGG	4 cut(s)	1061, 1095, 1163, 1324
Bse3DI	GCAATG	2 cut(s)	532, 602
BseBI	CCWGG	3 cut(s)	16, 801, 1347
BseDI	CCNNGG	4 cut(s)	38, 193, 297, 438
BseGI	GGATG	6 cut(s)	568, 624, 628, 733, 1099, 1273
BseLI	CCNNNNNNNGG	4 cut(s)	230, 274, 298, 863
BseMI	GCAATG	2 cut(s)	532, 602
BseMII	CTCAG	3 cut(s)	61, 243, 1039
BseNI	ACTGG	4 cut(s)	1061, 1095, 1163, 1324
BseRI	GAGGAG	5 cut(s)	49, 52, 83, 95, 98
BseSI	GKGCMC	1 cut(s)	1021
BseXI	GCAGC	2 cut(s)	265, 883
BsgI	GTGCAG	1 cut(s)	990
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	43, 572
BsiHKAI	GWGCWC	2 cut(s)	414, 1021
BsiSI	CCGG	3 cut(s)	292, 311, 725
BslFI	GGGAC	3 cut(s)	290, 1306, 1429
BslI	CCNNNNNNNGG	4 cut(s)	230, 274, 298, 863
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	3 cut(s)	290, 1306, 1429
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	2 cut(s)	43, 572
Bso31I	GGTCTC	1 cut(s)	609
Bsp1286I	GDGCHC	4 cut(s)	371, 414, 1021, 1112
Bsp143I	GATC	4 cut(s)	319, 378, 904, 1141
Bsp19I	CCATGG	2 cut(s)	38, 438
BspACI	CCGC	5 cut(s)	66, 187, 329, 772, 1436
BspANI	GGCC	2 cut(s)	43, 572
BspCNI	CTCAG	3 cut(s)	60, 244, 1038
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	1309
BspLI	GGNNCC	1 cut(s)	1005
BspMAI	CTGCAG	2 cut(s)	665, 1423
BspOI	GCTAGC	1 cut(s)	833
BspTNI	GGTCTC	1 cut(s)	609
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	2 cut(s)	532, 602
BsrI	ACTGG	4 cut(s)	1061, 1095, 1163, 1324
BssECI	CCNNGG	4 cut(s)	38, 193, 297, 438
BssMI	GATC	4 cut(s)	319, 378, 904, 1141
BssT1I	CCWWGG	3 cut(s)	38, 297, 438
Bst2UI	CCWGG	3 cut(s)	16, 801, 1347
Bst4CI	ACNGT	5 cut(s)	230, 406, 673, 1212, 1297
Bst6I	CTCTTC	5 cut(s)	14, 81, 101, 116, 155
BstC8I	GCNNGC	2 cut(s)	547, 831
BstDEI	CTNAG	3 cut(s)	47, 252, 1025
BstDSI	CCRYGG	2 cut(s)	38, 438
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	6 cut(s)	568, 624, 628, 733, 1099, 1273
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	4 cut(s)	322, 381, 907, 1144
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	4 cut(s)	319, 378, 904, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	818, 1030, 1039
BstNI	CCWGG	3 cut(s)	16, 801, 1347
BstPAI	GACNNNNGTC	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	14, 799, 1345
BstSFI	CTRYAG	3 cut(s)	590, 661, 1419
BstSLI	GKGCMC	1 cut(s)	1021
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	265, 883
BstV2I	GAAGAC	1 cut(s)	58
BsuI	GTATCC	2 cut(s)	896, 906
BsuRI	GGCC	2 cut(s)	43, 572
BtgI	CCRYGG	2 cut(s)	38, 438
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	6 cut(s)	568, 624, 628, 733, 1099, 1273
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	4 cut(s)	235, 849, 1054, 1088
Cac8I	GCNNGC	2 cut(s)	547, 831
CciI	TCATGA	1 cut(s)	1309
Cfr13I	GGNCC	3 cut(s)	294, 570, 797
CsiI	ACCWGGT	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	6 cut(s)	39, 274, 439, 519, 1277, 1310
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	47, 252, 1025
DpnI	GATC	4 cut(s)	321, 380, 906, 1143
DpnII	GATC	4 cut(s)	319, 378, 904, 1141
DraI	TTTAAA	1 cut(s)	1207
DrdI	GACNNNNNNGTC	1 cut(s)	1423
DseDI	GACNNNNNNGTC	1 cut(s)	1423
Eam1104I	CTCTTC	5 cut(s)	14, 81, 101, 116, 155
EarI	CTCTTC	5 cut(s)	14, 81, 101, 116, 155
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	3 cut(s)	38, 297, 438
Eco24I	GRGCYC	3 cut(s)	371, 414, 1112
Eco31I	GGTCTC	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	294, 797
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	5 cut(s)	220, 828, 912, 1184, 1322
EcoICRI	GAGCTC	1 cut(s)	412
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	938
EcoRII	CCWGG	3 cut(s)	14, 799, 1345
EcoT14I	CCWWGG	3 cut(s)	38, 297, 438
EcoT38I	GRGCYC	3 cut(s)	371, 414, 1112
ErhI	CCWWGG	3 cut(s)	38, 297, 438
FaeI	CATG	6 cut(s)	42, 277, 442, 522, 1280, 1313
FalI	AAGNNNNNCTT	2 cut(s)	1182, 1214
FaqI	GGGAC	3 cut(s)	290, 1306, 1429
FatI	CATG	6 cut(s)	38, 273, 438, 518, 1276, 1309
FauNDI	CATATG	2 cut(s)	643, 760
Fnu4HI	GCNGC	4 cut(s)	187, 279, 773, 872
FokI	GGATG	6 cut(s)	575, 631, 635, 740, 1106, 1280
FriOI	GRGCYC	3 cut(s)	371, 414, 1112
Fsp4HI	GCNGC	4 cut(s)	187, 279, 773, 872
FspBI	CTAG	3 cut(s)	830, 1034, 1476
GluI	GCNGC	4 cut(s)	187, 279, 773, 872
GsuI	CTGGAG	2 cut(s)	939, 1329
HaeIII	GGCC	2 cut(s)	43, 572
HapII	CCGG	3 cut(s)	292, 311, 725
Hin1II	CATG	6 cut(s)	42, 277, 442, 522, 1280, 1313
HincII	GTYRAC	1 cut(s)	1428
HindII	GTYRAC	1 cut(s)	1428
HindIII	AAGCTT	1 cut(s)	1286
HinfI	GANTC	9 cut(s)	4, 143, 397, 713, 815, 841, 1193, 1306, 1448
HpaII	CCGG	3 cut(s)	292, 311, 725
HphI	GGTGA	2 cut(s)	4, 314
Hpy166II	GTNNAC	2 cut(s)	1019, 1428
Hpy188I	TCNGA	7 cut(s)	50, 197, 288, 808, 900, 1028, 1221
Hpy8I	GTNNAC	2 cut(s)	1019, 1428
HpyAV	CCTTC	4 cut(s)	278, 903, 953, 1327
HpyCH4III	ACNGT	5 cut(s)	230, 406, 673, 1212, 1297
HpyCH4IV	ACGT	1 cut(s)	1460
HpyCH4V	TGCA	9 cut(s)	525, 549, 566, 632, 663, 971, 1019, 1271, 1421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	818, 1030, 1039
HpyF3I	CTNAG	3 cut(s)	47, 252, 1025
HpySE526I	ACGT	1 cut(s)	1460
Hsp92II	CATG	6 cut(s)	42, 277, 442, 522, 1280, 1313
Kzo9I	GATC	4 cut(s)	319, 378, 904, 1141
LmnI	GCTCC	6 cut(s)	194, 226, 859, 901, 958, 1009
Lsp1109I	GCAGC	2 cut(s)	265, 883
LweI	GCATC	4 cut(s)	553, 619, 1084, 1258
MabI	ACCWGGT	1 cut(s)	799
MaeI	CTAG	3 cut(s)	830, 1034, 1476
MaeII	ACGT	1 cut(s)	1460
MaeIII	GTNAC	1 cut(s)	1154
MalI	GATC	4 cut(s)	321, 380, 906, 1143
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	4 cut(s)	319, 378, 904, 1141
MhlI	GDGCHC	4 cut(s)	371, 414, 1021, 1112
MluCI	AATT	6 cut(s)	181, 753, 938, 1181, 1260, 1383
MlyI	GAGTC	2 cut(s)	850, 1457
MmeI	TCCRAC	1 cut(s)	540
MroXI	GAANNNNTTC	2 cut(s)	8, 942
MseI	TTAA	4 cut(s)	651, 1079, 1206, 1329
MslI	CAYNNNNRTG	1 cut(s)	1059
MspI	CCGG	3 cut(s)	292, 311, 725
MspR9I	CCNGG	3 cut(s)	16, 801, 1347
MssI	GTTTAAAC	1 cut(s)	1207
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	3 cut(s)	16, 801, 1347
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	818, 1030, 1039
NcoI	CCATGG	2 cut(s)	38, 438
NdeI	CATATG	2 cut(s)	643, 760
NdeII	GATC	4 cut(s)	319, 378, 904, 1141
NheI	GCTAGC	1 cut(s)	829
NlaIII	CATG	6 cut(s)	42, 277, 442, 522, 1280, 1313
NlaIV	GGNNCC	1 cut(s)	1005
NmeAIII	GCCGAG	1 cut(s)	318
PagI	TCATGA	1 cut(s)	1309
PcsI	WCGNNNNNNNCGW	1 cut(s)	1457
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	2 cut(s)	8, 942
PfeI	GAWTC	7 cut(s)	4, 143, 397, 713, 815, 1193, 1306
PfoI	TCCNGGA	1 cut(s)	1345
PkrI	GCNGC	4 cut(s)	188, 280, 774, 873
PleI	GAGTC	2 cut(s)	849, 1456
PmeI	GTTTAAAC	1 cut(s)	1207
PpsI	GAGTC	2 cut(s)	849, 1456
PshAI	GACNNNNGTC	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	3 cut(s)	14, 799, 1345
PspGI	CCWGG	3 cut(s)	14, 799, 1345
PspN4I	GGNNCC	1 cut(s)	1005
PspPI	GGNCC	3 cut(s)	294, 570, 797
PstI	CTGCAG	2 cut(s)	665, 1423
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	651, 1079, 1206, 1329
SatI	GCNGC	4 cut(s)	187, 279, 773, 872
Sau3AI	GATC	4 cut(s)	319, 378, 904, 1141
Sau96I	GGNCC	3 cut(s)	294, 570, 797
SchI	GAGTC	2 cut(s)	850, 1457
ScrFI	CCNGG	3 cut(s)	16, 801, 1347
SduI	GDGCHC	4 cut(s)	371, 414, 1021, 1112
SexAI	ACCWGGT	1 cut(s)	799
SfaNI	GCATC	4 cut(s)	553, 619, 1084, 1258
SfcI	CTRYAG	3 cut(s)	590, 661, 1419
SinI	GGWCC	2 cut(s)	294, 797
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	6 cut(s)	181, 753, 938, 1181, 1260, 1383
SsiI	CCGC	5 cut(s)	66, 187, 329, 772, 1436
SspMI	CTAG	3 cut(s)	830, 1034, 1476
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	3 cut(s)	14, 799, 1345
StyI	CCWWGG	3 cut(s)	38, 297, 438
TaaI	ACNGT	5 cut(s)	230, 406, 673, 1212, 1297
TaiI	ACGT	1 cut(s)	1463
TaqI	TCGA	6 cut(s)	34, 318, 487, 907, 946, 1451
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	6 cut(s)	181, 753, 938, 1181, 1260, 1383
TauI	GCSGC	2 cut(s)	189, 775
TfiI	GAWTC	7 cut(s)	4, 143, 397, 713, 815, 1193, 1306
Tru1I	TTAA	4 cut(s)	651, 1079, 1206, 1329
Tru9I	TTAA	4 cut(s)	651, 1079, 1206, 1329
TscAI	CASTG	4 cut(s)	235, 856, 1061, 1095
TseI	GCWGC	2 cut(s)	278, 871
TspDTI	ATGAA	5 cut(s)	17, 630, 744, 747, 1112
TspRI	CASTG	4 cut(s)	235, 856, 1061, 1095
VneI	GTGCAC	1 cut(s)	1017
VpaK11BI	GGWCC	2 cut(s)	294, 797
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	2 cut(s)	753, 938
XmnI	GAANNNNTTC	2 cut(s)	8, 942
XspI	CTAG	3 cut(s)	830, 1034, 1476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.