Rh7BG209000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015400
Physical Location & Seq
Reverse (-)
17630467 .. 17632415
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG209000.1

Sequence Viewer

Length: 1470 bp
ATGAACCTCTTAACCTCAAAACCCACCACCCTCCGATCCAAAAGGCAACCCTCCCAAAGGTCCCCACTCCTCTACCTCACCCTCCTCTTCTCCCTCCTCATCTTCCTCTTCTACTTCTTCTCCCTCAGCCCCAATTCCCTCCTCACCGCCCAACTTTCCCATTCCCCAAAATGCCCTTCTCTGGGTGGAGACAAGTTCCTCTGGTACGCCCCCCACAGTGGCGTCAGCAACCAGCTCATGGAGTTAAAAAACGGAATCTTGATGGCCGGCATTTTGAACCGGACGCTGGTTGTGCCGCCGGTTCTCGATCACCACGCTGTGGCTCTCGGGAGTTGCCCCAAGTTTCGGGTTTCGGCTCCGAATGAGATCAGGGGTGAGGTCTGGGACCATGTGGTTGAGCTCATTAGGAGTGGGAGGTATGTATCCATGGCTGACATTGTTGATATATCATCATTTGTTTCTTCTTCGTTAGTTCGAGTTATAGATTTCAGAGTTTTTATATCCTCATGGTGCAATGTGAACTTAGATTTTGCATGCCATAATGAGTTCAATGCACAGCCTTATTTGCTGGATAAGCTAAAGGAATGTGGATCTGTCCTAACTGGGGTCAAAGGTAATGTCAAGTGTTTATATGCTGTTAGTGAAGACTGCAGAACCACTGTTTGGACGTACCAAAATGGTAATGAGGATGGGGCATTAGATTCTTTTCAACCTGATGAAAAACTCAAGAAAAAGAAGGTTTCATATGTTAGGAAACGACGAGATGTATACAAGACTCTTGGACCGGGCTCTGAAGCTGAATCAGCTTCTGTGCTGGCATTTGGAAGCCTTTTCACTGCTCCTTACAAAGGTTCTGAGCTACTTATTGATATCCATGAATCTCCAAGAGATCAAAGGATAGGAAGTCTAATGGAGAAGATTGAGTTTCTTCCATTTGCTCCTGAAATTGTGAGTGCAGGAAAGAAGTTTGCTTTGGATACCATAAAGGCTCCTTTTCTATGTGCACAGCTTCGATTATTAGATGGGCAGTTTAAGAATCACCAGAAGGCTACTTTTCAAGGGCTAAAACAAAAGTTGGATGCTTTGATGCAGAGCCCTCTCCCCATTCATATCTTTGTGATGACTGATCTTCCTGAAAGTAATTGGACTGAAAATTACGTGGGGGATTTGGCTAGAGATTCAAATCAGTTTAAACTGTTTTTCCTGAAAGAAAGAGATGATTTGGTAATACAAACAGCTAAAAGAATTGTTGATGCAGGCCATGGCTTGAAGTTTGGGTCTGTTGCAAATATTCATGATGGAACTGATCAGATTAAGAAGGATTGTCCTTCTGCAGTAATACCCGATGTTCTTCTATACATAGAGCAAACTGTTTGCAGTTGTGCTTCTCTTGGATTTGTTGGGACTGCAGGATCAACTATTGCAGGGAGCATAGAGCTAATGAGAAAGTTTGGTGCATGTTCAAGCTAA

Protein Analysis

489

Amino Acids

54.23

Weight (kDa)

8.48

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17430
fragaria_vesca FvH4_5g19490
malus_domestica MD04G1060600.v1.1
prunus_persica Prupe.5G065000_v2.0.a1
pyrus_communis pycom04g05440 pycom06g04540
rosa_chinensis RchiOBHm_Chr7g0204071
rosa_laevigata RLG00000003490
rosa_multiflora Rmu_co8337455.1_g000001
rosa_roxburghii Rroxscaffold_3G00253380
rosa_rugosa Rorug07G0080400
rosa_samantha Rh7AG210400 Rh7BG209000 Rh7CG222800 Rh7DG217100
rosa_wichuraiana Rw7G018320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 238, 319, 663
AccI GTMKAC 1 cut(s) 768
AciI CCGC 2 cut(s) 147, 296
AclWI GGATC 3 cut(s) 30, 598, 1420
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 2 cut(s) 206, 671
AgsI TTSAA 7 cut(s) 277, 550, 710, 1058, 1182, 1270, 1464
AjuI GAANNNNNNNTTGG 6 cut(s) 160, 192, 646, 678, 956, 988
Alw21I GWGCWC 2 cut(s) 402, 1006
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 1002
AlwI GGATC 3 cut(s) 30, 598, 1420
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 2 cut(s) 264, 1258
ApaLI GTGCAC 1 cut(s) 1002
ArsI GACNNNNNNTTYG 2 cut(s) 603, 635
AspS9I GGNCC 3 cut(s) 60, 385, 782
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 5 cut(s) 70, 136, 302, 386, 1031
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 3 cut(s) 60, 385, 782
BaeGI GKGCMC 1 cut(s) 1006
BanII GRGCYC 3 cut(s) 402, 791, 1097
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 402, 1006
BbvCI CCTCAGC 1 cut(s) 125
BccI CCATC 4 cut(s) 256, 683, 1016, 1292
BciVI GTATCC 2 cut(s) 433, 970
BclI TGATCA 1 cut(s) 1306
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 1173
BfmI CTRYAG 3 cut(s) 649, 1332, 1407
BfuI GTATCC 2 cut(s) 433, 970
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 786
Bme18I GGWCC 3 cut(s) 60, 385, 782
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 3 cut(s) 60, 385, 782
BmiI GGNNCC 4 cut(s) 62, 357, 386, 990
BmrFI CCNGG 1 cut(s) 786
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 3 cut(s) 1069, 1077, 1243
BmuI ACTGGG 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 786
BsaAI YACGTR 1 cut(s) 1159
BsaBI GATNNNNATC 1 cut(s) 1182
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 426, 1261
BsaWI WCCGGW 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse118I RCCGGY 2 cut(s) 266, 298
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 1182
BseDI CCNNGG 2 cut(s) 426, 1261
BseGI GGATG 2 cut(s) 694, 1084
BseJI GATNNNNATC 1 cut(s) 1182
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 139, 846
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 4 cut(s) 59, 74, 86, 131
BseSI GKGCMC 1 cut(s) 1006
BsgI GTGCAG 1 cut(s) 975
BshFI GGCC 2 cut(s) 266, 1260
BsiHKAI GWGCWC 2 cut(s) 402, 1006
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 4 cut(s) 267, 280, 299, 785
BslFI GGGAC 3 cut(s) 46, 398, 1417
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 3 cut(s) 46, 398, 1417
BsnI GGCC 2 cut(s) 266, 1260
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 402, 791, 1006, 1097
Bsp143I GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
Bsp19I CCATGG 2 cut(s) 426, 1261
BspACI CCGC 2 cut(s) 147, 296
BspANI GGCC 2 cut(s) 266, 1260
BspCNI CTCAG 2 cut(s) 138, 847
BspHI TCATGA 1 cut(s) 1294
BspLI GGNNCC 4 cut(s) 62, 357, 386, 990
BspMAI CTGCAG 3 cut(s) 653, 1336, 1411
BspPI GGATC 3 cut(s) 30, 598, 1420
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 2 cut(s) 266, 298
BsrI ACTGG 1 cut(s) 607
BssAI RCCGGY 2 cut(s) 266, 298
BssECI CCNNGG 2 cut(s) 426, 1261
BssMI GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
BssNAI GTATAC 1 cut(s) 769
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 426, 1261
Bst1107I GTATAC 1 cut(s) 769
Bst4CI ACNGT 4 cut(s) 218, 661, 1197, 1372
Bst6I CTCTTC 2 cut(s) 92, 113
BstACI GRCGYC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 1159
BstC8I GCNNGC 4 cut(s) 268, 535, 816, 1258
BstDEI CTNAG 3 cut(s) 125, 523, 855
BstDSI CCRYGG 2 cut(s) 426, 1261
BstENI CCTNNNNNAGG 2 cut(s) 55, 846
BstF5I GGATG 2 cut(s) 694, 1084
BstKTI GATC 8 cut(s) 38, 310, 369, 593, 892, 1129, 1309, 1415
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
BstMWI GCNNNNNNNGC 4 cut(s) 292, 565, 574, 803
BstNSI RCATGY 2 cut(s) 537, 1461
BstSCI CCNGG 1 cut(s) 784
BstSFI CTRYAG 3 cut(s) 649, 1332, 1407
BstSLI GKGCMC 1 cut(s) 1006
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
BstZ17I GTATAC 1 cut(s) 769
BsuI GTATCC 2 cut(s) 433, 970
BsuRI GGCC 2 cut(s) 266, 1260
BtgI CCRYGG 2 cut(s) 426, 1261
BtsCI GGATG 2 cut(s) 694, 1084
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 223, 657, 834
Cac8I GCNNGC 4 cut(s) 268, 535, 816, 1258
CaiI CAGNNNCTG 1 cut(s) 809
CciI TCATGA 1 cut(s) 1294
Cfr10I RCCGGY 2 cut(s) 266, 298
Cfr13I GGNCC 3 cut(s) 60, 385, 782
CseI GACGC 2 cut(s) 211, 292
Csp6I GTAC 2 cut(s) 205, 670
CviAII CATG 9 cut(s) 238, 389, 427, 507, 534, 875, 1262, 1295, 1458
CviQI GTAC 2 cut(s) 205, 670
DdeI CTNAG 3 cut(s) 125, 523, 855
DpnI GATC 8 cut(s) 37, 309, 368, 592, 891, 1128, 1308, 1414
DpnII GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
DraI TTTAAA 1 cut(s) 1192
DraIII CACNNNGTG 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 92, 113
EarI CTCTTC 2 cut(s) 92, 113
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 2 cut(s) 426, 1261
Eco24I GRGCYC 3 cut(s) 402, 791, 1097
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 3 cut(s) 60, 385, 782
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 813
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 400
EcoNI CCTNNNNNAGG 2 cut(s) 55, 846
EcoO109I RGGNCCY 1 cut(s) 60
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 2 cut(s) 426, 1261
EcoT38I GRGCYC 3 cut(s) 402, 791, 1097
ErhI CCWWGG 2 cut(s) 426, 1261
FaeI CATG 9 cut(s) 241, 392, 430, 510, 537, 878, 1265, 1298, 1461
FaqI GGGAC 3 cut(s) 46, 398, 1417
FatI CATG 9 cut(s) 237, 388, 426, 506, 533, 874, 1261, 1294, 1457
FauNDI CATATG 1 cut(s) 745
FbaI TGATCA 1 cut(s) 1306
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 701, 1091
FriOI GRGCYC 3 cut(s) 402, 791, 1097
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 1173
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 2 cut(s) 266, 1260
HapII CCGG 4 cut(s) 267, 280, 299, 785
HgaI GACGC 2 cut(s) 211, 292
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 9 cut(s) 241, 392, 430, 510, 537, 878, 1265, 1298, 1461
HinfI GANTC 7 cut(s) 255, 701, 775, 800, 878, 1036, 1178
HpaII CCGG 4 cut(s) 267, 280, 299, 785
HphI GGTGA 5 cut(s) 70, 136, 302, 386, 1031
Hpy166II GTNNAC 3 cut(s) 520, 769, 1004
Hpy188I TCNGA 6 cut(s) 35, 360, 491, 793, 856, 1311
Hpy188III TCNNGA 8 cut(s) 259, 305, 328, 727, 941, 1133, 1204, 1295
Hpy8I GTNNAC 3 cut(s) 520, 769, 1004
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 5 cut(s) 186, 730, 1039, 1312, 1338
HpyCH4III ACNGT 4 cut(s) 218, 661, 1197, 1372
HpyCH4IV ACGT 2 cut(s) 668, 1158
HpyF10VI GCNNNNNNNGC 4 cut(s) 292, 565, 574, 803
HpyF3I CTNAG 3 cut(s) 125, 523, 855
HpySE526I ACGT 2 cut(s) 668, 1158
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 9 cut(s) 241, 392, 430, 510, 537, 878, 1265, 1298, 1461
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 1306
Kzo9I GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
LmnI GCTCC 5 cut(s) 361, 844, 943, 994, 1428
LweI GCATC 3 cut(s) 1069, 1077, 1243
MaeI CTAG 1 cut(s) 1173
MaeII ACGT 2 cut(s) 668, 1158
MalI GATC 8 cut(s) 37, 309, 368, 592, 891, 1128, 1308, 1414
MboI GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 4 cut(s) 402, 791, 1006, 1097
MluCI AATT 5 cut(s) 133, 945, 1141, 1153, 1245
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 1056
MroNI GCCGGC 1 cut(s) 266
MseI TTAA 5 cut(s) 11, 245, 1032, 1191, 1314
MspI CCGG 4 cut(s) 267, 280, 299, 785
MspR9I CCNGG 1 cut(s) 786
MssI GTTTAAAC 1 cut(s) 1192
MwoI GCNNNNNNNGC 4 cut(s) 292, 565, 574, 803
NaeI GCCGGC 1 cut(s) 268
NciI CCSGG 1 cut(s) 786
NcoI CCATGG 2 cut(s) 426, 1261
NdeI CATATG 1 cut(s) 745
NdeII GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 9 cut(s) 241, 392, 430, 510, 537, 878, 1265, 1298, 1461
NlaIV GGNNCC 4 cut(s) 62, 357, 386, 990
NspI RCATGY 2 cut(s) 537, 1461
PaeI GCATGC 1 cut(s) 537
PagI TCATGA 1 cut(s) 1294
PdiI GCCGGC 1 cut(s) 268
PfeI GAWTC 6 cut(s) 255, 701, 800, 878, 1036, 1178
PflMI CCANNNNNTGG 3 cut(s) 238, 319, 663
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 769
PmeI GTTTAAAC 1 cut(s) 1192
PpsI GAGTC 1 cut(s) 769
Ppu21I YACGTR 1 cut(s) 1159
PpuMI RGGWCCY 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 62, 357, 386, 990
PspPI GGNCC 3 cut(s) 60, 385, 782
PspPPI RGGWCCY 1 cut(s) 60
PstI CTGCAG 3 cut(s) 653, 1336, 1411
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 2 cut(s) 206, 671
RsaNI GTAC 2 cut(s) 205, 670
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 5 cut(s) 11, 245, 1032, 1191, 1314
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 8 cut(s) 35, 307, 366, 590, 889, 1126, 1306, 1412
Sau96I GGNCC 3 cut(s) 60, 385, 782
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 1 cut(s) 786
SduI GDGCHC 4 cut(s) 402, 791, 1006, 1097
SfaNI GCATC 3 cut(s) 1069, 1077, 1243
SfcI CTRYAG 3 cut(s) 649, 1332, 1407
SinI GGWCC 3 cut(s) 60, 385, 782
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
SphI GCATGC 1 cut(s) 537
Sse9I AATT 5 cut(s) 133, 945, 1141, 1153, 1245
SsiI CCGC 2 cut(s) 147, 296
SspI AATATT 1 cut(s) 1291
SspMI CTAG 1 cut(s) 1173
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 784
StyI CCWWGG 2 cut(s) 426, 1261
TaaI ACNGT 4 cut(s) 218, 661, 1197, 1372
TaiI ACGT 2 cut(s) 671, 1161
TaqI TCGA 3 cut(s) 306, 475, 1012
TasI AATT 5 cut(s) 133, 945, 1141, 1153, 1245
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 6 cut(s) 255, 701, 800, 878, 1036, 1178
Tru1I TTAA 5 cut(s) 11, 245, 1032, 1191, 1314
Tru9I TTAA 5 cut(s) 11, 245, 1032, 1191, 1314
TscAI CASTG 3 cut(s) 223, 664, 841
TspDTI ATGAA 6 cut(s) 17, 732, 732, 891, 1097, 1283
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 3 cut(s) 223, 664, 841
Van91I CCANNNNNTGG 3 cut(s) 238, 319, 663
VneI GTGCAC 1 cut(s) 1002
VpaK11BI GGWCC 3 cut(s) 60, 385, 782
XagI CCTNNNNNAGG 2 cut(s) 55, 846
XceI RCATGY 2 cut(s) 537, 1461
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.