RchiOBHm_Chr7g0204071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015400
Physical Location & Seq
Reverse (-)
21640753 .. 21643443
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18264

Sequence Viewer

Length: 1590 bp
ATGAGTTGGTTCAACCCACTTACCCAGAATCCCAGATCCAGTTCCTCCTCCCAATTCCGTATCATACATTCACAGCAACACTCAAAGCTCCAGTCTTTCTACCCCAATTCAAAAACCCAGAAAGCCATGAACCTCTTAACCTCAAAACCCACCACCCTCCGATCCAAAAGGCAACCCTCCCAAAGGTCCCCACTCCTCTACCTCACCCTCCTCTTCTCCCTCCTCATCTTCCTCTTCTACTTCTTCTCCCTCAGCCCCAATTCCCTCCTCACCGCCCAACTTTCCCATTCTCCAAAATGCCCTTCTCTGGGTGGAGACAAGTTCCTCTGGTACGCCCCCCACAGTGGCTTCAGCAACCAGCTCATGGAGTTGAAGAACGGAATCTTGATGGCCGGCATTTTGAACCGGACGCTGGTTGTGCCGCCGGTTCTCGATCACCACGCTGTGGCTCTCGGGAGTTGCCCCAAGTTTCGGGTTTCGGCTCCGAATGAGATCAGGGGTCAGGTCTGGGAGCATGTGATTGAGCTCATTGGGAGTGGGAGGTATGTATCCATGGCTGACATTGTTGATATATCGTCATTAGTTTCTTCTTCGTTAGTTCGAGTTATAGATTTCAGGGTTTTTATATCCTCATGGTGCAATGTGAACTTAGATTTTGCTTGCCATAATGAGTTCAATGCACATTTGCTGGATAAATTAAAGGAATGTGGATCTGTACTAAGTGGTGTCAAAGGTAACGTTAAGTGTTTATATGCTGTTAATGAAGACTGCAGAACCACTGTTTGGACATACCAGAATGGTAATGAGGATGTGGCATTAGATTCTTTTCAACCTGATGAAAAACTCAAGAAAAAGAAGATTTCATATGTTAGGAAACGACGAGATGTATACAAGACTCTCGGACCGGGTTCTGAAGCTGAATCAGCTTCTGTGCTGGCATTTGGAAGCCTTTTCACAGCTCCTTACAAAGGTTCTGAGCTACTTATTGATATCCATGAATCTCCAAGAGATCAAAGGATAGGAAGTCTAATGGAGAAGATTGAGTTTCTTCCATTTGCTCCTGAAATTGTGAGTGCAGGAAAGAAGTTTGCTTTGGATACCATAAAGGCTCCTTTTCTATGTGCACAGCTTCGATTATTAGACGGGCAGTTCAAGAATCACCGGAAGGCTACTTTTCAAGGGCTAAAACAAAAGTTGGATGCTTTGATGCAGAGCCCTCTCCCCATTCATATCTTTGTGATGACTGATCTTCCTGAAAGTAATTGGACTGAAAATTACTTGGGGGATTTGGCTAGAGATTCAAATCAGTTTAAACTGTTTTTCCTGAAAGAAAGAGATGATTTGGTAATACAAACAGCTACAAGAATTGTTGATGCAGGCCATGGCTTGAAGTTTGGGTCTGTTGCAAATATTCATGATGGAACTGATCAGATTAAGAAGGATTGCCCTTCTGCAGTAATACCCGATGTTCTTCTATACATAGAGCAAACTGTTTGCAGTTGTGCGTCTCTTGGATTTGTTGGGACTGCAGGATCAACTATTGCAGGGAGCATAGAGCTAATGAGAAAGTTCGGCGCATGTTCAAGCTAA

Protein Analysis

529

Amino Acids

58.9

Weight (kDa)

8.92

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17430
fragaria_vesca FvH4_5g19490
malus_domestica MD04G1060600.v1.1
prunus_persica Prupe.5G065000_v2.0.a1
pyrus_communis pycom04g05440 pycom06g04540
rosa_chinensis RchiOBHm_Chr7g0204071
rosa_laevigata RLG00000003490
rosa_multiflora Rmu_co8337455.1_g000001
rosa_roxburghii Rroxscaffold_3G00253380
rosa_rugosa Rorug07G0080400
rosa_samantha Rh7AG210400 Rh7BG209000 Rh7CG222800 Rh7DG217100
rosa_wichuraiana Rw7G018320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 364, 445, 783
AccI GTMKAC 1 cut(s) 888
AciI CCGC 2 cut(s) 273, 422
AclI AACGTT 1 cut(s) 738
AclWI GGATC 4 cut(s) 30, 156, 718, 1540
AcoI YGGCCR 1 cut(s) 390
AcuI CTGAAG 2 cut(s) 334, 933
AdeI CACNNNGTG 1 cut(s) 445
AfaI GTAC 2 cut(s) 332, 717
AjuI GAANNNNNNNTTGG 6 cut(s) 286, 318, 766, 798, 1076, 1108
Alw21I GWGCWC 2 cut(s) 528, 1126
Alw26I GTCTC 2 cut(s) 309, 1512
Alw44I GTGCAC 1 cut(s) 1122
AlwI GGATC 4 cut(s) 30, 156, 718, 1540
AlwNI CAGNNNCTG 1 cut(s) 929
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 2 cut(s) 390, 1378
ApaLI GTGCAC 1 cut(s) 1122
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 1 cut(s) 1577
AspS9I GGNCC 2 cut(s) 186, 902
AsuC2I CCSGG 1 cut(s) 906
AsuHPI GGTGA 4 cut(s) 196, 262, 428, 1151
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 2 cut(s) 186, 902
BaeGI GKGCMC 1 cut(s) 1126
BanII GRGCYC 2 cut(s) 528, 1217
BbsI GAAGAC 1 cut(s) 771
Bbv12I GWGCWC 2 cut(s) 528, 1126
BbvCI CCTCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 382, 1412
BciVI GTATCC 2 cut(s) 559, 1090
BclI TGATCA 1 cut(s) 1426
BcnI CCSGG 1 cut(s) 906
BcoDI GTCTC 2 cut(s) 309, 1512
BfaI CTAG 1 cut(s) 1293
BfmI CTRYAG 3 cut(s) 769, 1452, 1527
BfuI GTATCC 2 cut(s) 559, 1090
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 906
Bme18I GGWCC 2 cut(s) 186, 902
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 186, 902
BmiI GGNNCC 3 cut(s) 188, 483, 1110
BmrFI CCNGG 1 cut(s) 906
BmsI GCATC 3 cut(s) 1189, 1197, 1363
BpiI GAAGAC 1 cut(s) 771
BpmI CTGGAG 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 906
BsaBI GATNNNNATC 1 cut(s) 1302
BsaJI CCNNGG 2 cut(s) 552, 1381
BsaWI WCCGGW 2 cut(s) 405, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bse118I RCCGGY 2 cut(s) 392, 424
Bse1I ACTGG 2 cut(s) 39, 91
Bse3DI GCAATG 1 cut(s) 646
Bse8I GATNNNNATC 1 cut(s) 1302
BseDI CCNNGG 2 cut(s) 552, 1381
BseGI GGATG 2 cut(s) 814, 1204
BseJI GATNNNNATC 1 cut(s) 1302
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 2 cut(s) 265, 966
BseNI ACTGG 2 cut(s) 39, 91
BseRI GAGGAG 5 cut(s) 37, 185, 200, 212, 257
BseSI GKGCMC 1 cut(s) 1126
BsgI GTGCAG 1 cut(s) 1095
BshFI GGCC 2 cut(s) 392, 1380
BsiHKAI GWGCWC 2 cut(s) 528, 1126
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 5 cut(s) 393, 406, 425, 905, 1162
BslFI GGGAC 2 cut(s) 172, 1537
BsmAI GTCTC 2 cut(s) 309, 1512
BsmBI CGTCTC 1 cut(s) 1512
BsmFI GGGAC 2 cut(s) 172, 1537
BsnI GGCC 2 cut(s) 392, 1380
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 3 cut(s) 528, 1126, 1217
Bsp143I GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
Bsp19I CCATGG 2 cut(s) 552, 1381
BspACI CCGC 2 cut(s) 273, 422
BspANI GGCC 2 cut(s) 392, 1380
BspCNI CTCAG 2 cut(s) 264, 967
BspHI TCATGA 1 cut(s) 1414
BspLI GGNNCC 3 cut(s) 188, 483, 1110
BspMAI CTGCAG 3 cut(s) 773, 1456, 1531
BspPI GGATC 4 cut(s) 30, 156, 718, 1540
BsrDI GCAATG 1 cut(s) 646
BsrFI RCCGGY 2 cut(s) 392, 424
BsrI ACTGG 2 cut(s) 39, 91
BssAI RCCGGY 2 cut(s) 392, 424
BssECI CCNNGG 2 cut(s) 552, 1381
BssMI GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
BssNAI GTATAC 1 cut(s) 889
BssT1I CCWWGG 2 cut(s) 552, 1381
Bst1107I GTATAC 1 cut(s) 889
Bst4CI ACNGT 4 cut(s) 344, 781, 1317, 1492
Bst6I CTCTTC 2 cut(s) 218, 239
BstC8I GCNNGC 4 cut(s) 394, 661, 936, 1378
BstDEI CTNAG 4 cut(s) 251, 649, 719, 975
BstDSI CCRYGG 2 cut(s) 552, 1381
BstENI CCTNNNNNAGG 2 cut(s) 181, 966
BstF5I GGATG 2 cut(s) 814, 1204
BstHHI GCGC 1 cut(s) 1577
BstKTI GATC 9 cut(s) 38, 164, 436, 495, 713, 1012, 1249, 1429, 1535
BstMAI GTCTC 2 cut(s) 309, 1512
BstMBI GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
BstMWI GCNNNNNNNGC 2 cut(s) 418, 923
BstNSI RCATGY 2 cut(s) 518, 1581
BstSCI CCNGG 1 cut(s) 904
BstSFI CTRYAG 3 cut(s) 769, 1452, 1527
BstSLI GKGCMC 1 cut(s) 1126
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 2 cut(s) 35, 710
BstYI RGATCY 2 cut(s) 35, 710
BstZ17I GTATAC 1 cut(s) 889
BsuI GTATCC 2 cut(s) 559, 1090
BsuRI GGCC 2 cut(s) 392, 1380
BtgI CCRYGG 2 cut(s) 552, 1381
BtsCI GGATG 2 cut(s) 814, 1204
BtsIMutI CAGTG 2 cut(s) 349, 777
Cac8I GCNNGC 4 cut(s) 394, 661, 936, 1378
CaiI CAGNNNCTG 1 cut(s) 929
CciI TCATGA 1 cut(s) 1414
CfoI GCGC 1 cut(s) 1577
Cfr10I RCCGGY 2 cut(s) 392, 424
Cfr13I GGNCC 2 cut(s) 186, 902
CpoI CGGWCCG 1 cut(s) 902
CseI GACGC 2 cut(s) 418, 1494
Csp6I GTAC 2 cut(s) 331, 716
CspI CGGWCCG 1 cut(s) 902
CviAII CATG 9 cut(s) 127, 364, 515, 553, 633, 995, 1382, 1415, 1578
CviQI GTAC 2 cut(s) 331, 716
DdeI CTNAG 4 cut(s) 251, 649, 719, 975
DpnI GATC 9 cut(s) 37, 163, 435, 494, 712, 1011, 1248, 1428, 1534
DpnII GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
DraI TTTAAA 1 cut(s) 1312
DraIII CACNNNGTG 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 218, 239
EarI CTCTTC 2 cut(s) 218, 239
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 552, 1381
Eco24I GRGCYC 2 cut(s) 528, 1217
Eco32I GATATC 1 cut(s) 991
Eco47I GGWCC 2 cut(s) 186, 902
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 334, 933
Eco88I CYCGRG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 526
EcoNI CCTNNNNNAGG 2 cut(s) 181, 966
EcoO109I RGGNCCY 1 cut(s) 186
EcoRV GATATC 1 cut(s) 991
EcoT14I CCWWGG 2 cut(s) 552, 1381
EcoT38I GRGCYC 2 cut(s) 528, 1217
ErhI CCWWGG 2 cut(s) 552, 1381
Esp3I CGTCTC 1 cut(s) 1512
FaeI CATG 9 cut(s) 130, 367, 518, 556, 636, 998, 1385, 1418, 1581
FaqI GGGAC 2 cut(s) 172, 1537
FatI CATG 9 cut(s) 126, 363, 514, 552, 632, 994, 1381, 1414, 1577
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 1 cut(s) 1426
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 2 cut(s) 821, 1211
FriOI GRGCYC 2 cut(s) 528, 1217
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 1 cut(s) 1293
GlaI GCGC 1 cut(s) 1576
GluI GCNGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 2 cut(s) 392, 1380
HapII CCGG 5 cut(s) 393, 406, 425, 905, 1162
HgaI GACGC 2 cut(s) 418, 1494
HhaI GCGC 1 cut(s) 1577
Hin1II CATG 9 cut(s) 130, 367, 518, 556, 636, 998, 1385, 1418, 1581
Hin6I GCGC 1 cut(s) 1575
HinP1I GCGC 1 cut(s) 1575
HinfI GANTC 8 cut(s) 28, 381, 821, 895, 920, 998, 1156, 1298
HpaII CCGG 5 cut(s) 393, 406, 425, 905, 1162
HphI GGTGA 4 cut(s) 196, 262, 428, 1151
Hpy166II GTNNAC 3 cut(s) 646, 889, 1124
Hpy188I TCNGA 6 cut(s) 161, 486, 902, 913, 976, 1431
Hpy188III TCNNGA 9 cut(s) 385, 431, 454, 847, 1061, 1153, 1253, 1324, 1415
Hpy8I GTNNAC 3 cut(s) 646, 889, 1124
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 4 cut(s) 312, 1159, 1432, 1458
HpyCH4III ACNGT 4 cut(s) 344, 781, 1317, 1492
HpyCH4IV ACGT 1 cut(s) 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 923
HpyF3I CTNAG 4 cut(s) 251, 649, 719, 975
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 9 cut(s) 130, 367, 518, 556, 636, 998, 1385, 1418, 1581
HspAI GCGC 1 cut(s) 1575
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 1426
Kzo9I GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
LmnI GCTCC 7 cut(s) 93, 487, 511, 964, 1063, 1114, 1548
LweI GCATC 3 cut(s) 1189, 1197, 1363
MaeI CTAG 1 cut(s) 1293
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 1 cut(s) 734
MalI GATC 9 cut(s) 37, 163, 435, 494, 712, 1011, 1248, 1428, 1534
MboI GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
MflI RGATCY 2 cut(s) 35, 710
MhlI GDGCHC 3 cut(s) 528, 1126, 1217
MluCI AATT 8 cut(s) 53, 106, 259, 695, 1065, 1261, 1273, 1365
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 1 cut(s) 1176
MroNI GCCGGC 1 cut(s) 392
MseI TTAA 6 cut(s) 137, 698, 741, 759, 1311, 1434
MspI CCGG 5 cut(s) 393, 406, 425, 905, 1162
MspR9I CCNGG 1 cut(s) 906
MssI GTTTAAAC 1 cut(s) 1312
MwoI GCNNNNNNNGC 2 cut(s) 418, 923
NaeI GCCGGC 1 cut(s) 394
NciI CCSGG 1 cut(s) 906
NcoI CCATGG 2 cut(s) 552, 1381
NdeI CATATG 1 cut(s) 865
NdeII GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
NgoMIV GCCGGC 1 cut(s) 392
NlaIII CATG 9 cut(s) 130, 367, 518, 556, 636, 998, 1385, 1418, 1581
NlaIV GGNNCC 3 cut(s) 188, 483, 1110
NspI RCATGY 2 cut(s) 518, 1581
PagI TCATGA 1 cut(s) 1414
PdiI GCCGGC 1 cut(s) 394
PfeI GAWTC 7 cut(s) 28, 381, 821, 920, 998, 1156, 1298
PflMI CCANNNNNTGG 3 cut(s) 364, 445, 783
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 889
PmeI GTTTAAAC 1 cut(s) 1312
PpsI GAGTC 1 cut(s) 889
PpuMI RGGWCCY 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 528
Psp1406I AACGTT 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 188, 483, 1110
PspPI GGNCC 2 cut(s) 186, 902
PspPPI RGGWCCY 1 cut(s) 186
PstI CTGCAG 3 cut(s) 773, 1456, 1531
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 2 cut(s) 35, 710
RsaI GTAC 2 cut(s) 332, 717
RsaNI GTAC 2 cut(s) 331, 716
Rsr2I CGGWCCG 1 cut(s) 902
RsrII CGGWCCG 1 cut(s) 902
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 6 cut(s) 137, 698, 741, 759, 1311, 1434
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 9 cut(s) 35, 161, 433, 492, 710, 1009, 1246, 1426, 1532
Sau96I GGNCC 2 cut(s) 186, 902
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 1 cut(s) 906
SduI GDGCHC 3 cut(s) 528, 1126, 1217
SfaNI GCATC 3 cut(s) 1189, 1197, 1363
SfcI CTRYAG 3 cut(s) 769, 1452, 1527
SinI GGWCC 2 cut(s) 186, 902
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 8 cut(s) 53, 106, 259, 695, 1065, 1261, 1273, 1365
SsiI CCGC 2 cut(s) 273, 422
SspI AATATT 1 cut(s) 1411
SspMI CTAG 1 cut(s) 1293
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 904
StyI CCWWGG 2 cut(s) 552, 1381
TaaI ACNGT 4 cut(s) 344, 781, 1317, 1492
TaiI ACGT 1 cut(s) 741
TaqI TCGA 3 cut(s) 432, 601, 1132
TasI AATT 8 cut(s) 53, 106, 259, 695, 1065, 1261, 1273, 1365
TatI WGTACW 1 cut(s) 715
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 7 cut(s) 28, 381, 821, 920, 998, 1156, 1298
Tru1I TTAA 6 cut(s) 137, 698, 741, 759, 1311, 1434
Tru9I TTAA 6 cut(s) 137, 698, 741, 759, 1311, 1434
TscAI CASTG 2 cut(s) 349, 784
TspDTI ATGAA 7 cut(s) 143, 777, 852, 852, 1011, 1217, 1403
TspGWI ACGGA 2 cut(s) 47, 393
TspRI CASTG 2 cut(s) 349, 784
Van91I CCANNNNNTGG 3 cut(s) 364, 445, 783
VneI GTGCAC 1 cut(s) 1122
VpaK11BI GGWCC 2 cut(s) 186, 902
XagI CCTNNNNNAGG 2 cut(s) 181, 966
XceI RCATGY 2 cut(s) 518, 1581
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 1 cut(s) 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.