Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015400

Physical Location & Seq

Genomic Coordinates Forward (+)

47403020 .. 47406065

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGAACAGTGATCGGGTCCAAATCTCGGATGCTCTAAGAGAAAATAGTTTGTGGCTCTTGACAGACCCGGACCCATTCACAGCAACACTCAAAGCTCCAGTCTTTCTCCCCCAATTCAAAAACCCAGAAAGCCATGAACCTCTTAACCTCAAAACCCACCACCCTCCGATCCAAAAGGCAACCCTCCCAAAGGTCCCCACTCCTCTACCTCACCCTCCTCTTCTCCCTCCTCATCTTCCTCTTCTACTTCTTCTCCCTCAGCCCCAATTCCCTCCTCACCGCCCAACTTTCCCATTCCCCAAAATGCCCCTCTCTCGGCGGAGACAAGTTCCTCTGGTACGCCCCCACAGCGGCTTCAGCAACCAGCTCATGGAGTTGAAAAACGGAATCTTGATGGCCGGCATTTTGAACCGGACGCTGGTTGTGCCGCCGGTTCTCGATCACCACGCTGTGGCTCTCGGGAGTTGCCCCAAGTTTCGGGTTTCAGCTCCGAATGAGATCAGGGGTGAGGTATGGGAGCATGTGATTGAGCTCTTTAGGAGTGGGAGGTATGTATCCATCGCTGACATTGTTGATATATCATCAATAGTTTCTTCTTCGTTAGTTCGAGTTATAGATTTCAGAGTTTTTATATCCGCATGGTGCAATGTGAACTTAGATTTTGCATGCCATAATGAGTTCAATGCACAGCCTTATTTGCTGGATAAGCTAAAGGAATGTGGATCTGTACTAACTGGGGTCAAAGGTAATGTCAAGTGTTTATATGCTGTTAATGAAGACTGCAGAACCACTGTTTGGACGTACCAAAATGGTAATGAGGATGGGGCATTAGATTCTTTTCAACCTGATGAAAAACTCAAGAAAAAGAAGATTTCATATGTTAGGAAACGACGAGATGTATACAAGACTCTTGGACCGGGTTCTGAAGCTGAATCAGCTTCTTTGCTGGCATTTGGAAGTCTTTTCACTGCTCCTTACAAAGGTTCTGAGCTACTCATTGATATACATGAATCTCCAAGAGATCAAAGGATAGGAAGTCTAATGGAGAAGATTGAGTTTCTTCCATTTGCTCCTGAAATTATGAGTGCAGGAAAGAAGTTTGCTTTGGATACCATAAAGGCTCCTTTTCTATGTGCACAGCTTCGATTATTAGATGGGCAGTTCAAAAATCACCGGAAGGCTACTTTTCAAGGGCTAAAACAAAAGTTGGATGCTTTGATGCAGAGCCCTCTCCCCATTCATATCTTTGTGATGACTGATCTTCCTGAAAGTAATTGGACTGGAAATTACTTGGGGGATTTGGCTAGAGATTCAAATCAGTTTAAACTGTTTTTCCTGAAAGAAAGTGATGCTTTGGTAATACAAACAGCTAAAATAATTGTTGATGCAGGCCATGGCTTGAAGTTTGGGTCTGTTGCAAATATTCATGATGGAACTGATCAGATTAAGAAGGATTGTCCTTCTGCAGTAATACCCGATGTTCTACTATATATAGAGCAAACTGTTTGCAGTTGTGCTTCTCTTGGATTTGTTGGGACTGCAGGATCAACTATTGCAGGGAGCATAGAGCTAATGAGAAAGTTCGGTGCATGTTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

533

Amino Acids

59.25

Weight (kDa)

8.63

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17430
fragaria_vesca	FvH4_5g19490
malus_domestica	MD04G1060600.v1.1
prunus_persica	Prupe.5G065000_v2.0.a1
pyrus_communis	pycom04g05440 pycom06g04540
rosa_chinensis	RchiOBHm_Chr7g0204071
rosa_laevigata	RLG00000003490
rosa_multiflora	Rmu_co8337455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253380
rosa_rugosa	Rorug07G0080400
rosa_samantha	Rh7AG210400 Rh7BG209000 Rh7CG222800 Rh7DG217100
rosa_wichuraiana	Rw7G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	370, 451, 795
AccI	GTMKAC	1 cut(s)	900
AciI	CCGC	5 cut(s)	280, 319, 351, 428, 636
AclWI	GGATC	3 cut(s)	163, 730, 1552
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	2 cut(s)	340, 945
AdeI	CACNNNGTG	1 cut(s)	451
AfaI	GTAC	3 cut(s)	339, 729, 803
AjuI	GAANNNNNNNTTGG	4 cut(s)	778, 810, 1088, 1120
Alw21I	GWGCWC	2 cut(s)	534, 1138
Alw26I	GTCTC	1 cut(s)	316
Alw44I	GTGCAC	1 cut(s)	1134
AlwI	GGATC	3 cut(s)	163, 730, 1552
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	2 cut(s)	396, 1390
ApaLI	GTGCAC	1 cut(s)	1134
ArsI	GACNNNNNNTTYG	4 cut(s)	84, 116, 735, 767
AspS9I	GGNCC	4 cut(s)	16, 70, 193, 914
AsuC2I	CCSGG	2 cut(s)	68, 918
AsuHPI	GGTGA	5 cut(s)	203, 269, 434, 518, 1163
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	4 cut(s)	16, 70, 193, 914
BaeGI	GKGCMC	1 cut(s)	1138
BanII	GRGCYC	2 cut(s)	534, 1229
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	2 cut(s)	534, 1138
BbvCI	CCTCAGC	1 cut(s)	258
BccI	CCATC	5 cut(s)	388, 566, 815, 1148, 1424
BciVI	GTATCC	2 cut(s)	565, 1102
BclI	TGATCA	1 cut(s)	1438
BcnI	CCSGG	2 cut(s)	68, 918
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	1305
BfmI	CTRYAG	3 cut(s)	781, 1464, 1539
BfuI	GTATCC	2 cut(s)	565, 1102
BisI	GCNGC	2 cut(s)	352, 428
BlsI	GCNGC	2 cut(s)	353, 429
Bme1390I	CCNGG	2 cut(s)	68, 918
Bme18I	GGWCC	4 cut(s)	16, 70, 193, 914
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	4 cut(s)	16, 70, 193, 914
BmiI	GGNNCC	4 cut(s)	17, 72, 195, 1122
BmrFI	CCNGG	2 cut(s)	68, 918
BmrI	ACTGGG	1 cut(s)	744
BmsI	GCATC	5 cut(s)	19, 1201, 1209, 1339, 1375
BmuI	ACTGGG	1 cut(s)	744
BpiI	GAAGAC	1 cut(s)	783
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	2 cut(s)	68, 918
BsaBI	GATNNNNATC	1 cut(s)	1314
BsaJI	CCNNGG	1 cut(s)	1393
BsaWI	WCCGGW	2 cut(s)	411, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse118I	RCCGGY	2 cut(s)	398, 430
Bse1I	ACTGG	3 cut(s)	98, 739, 1285
Bse3DI	GCAATG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	1314
BseDI	CCNNGG	1 cut(s)	1393
BseGI	GGATG	3 cut(s)	34, 826, 1216
BseJI	GATNNNNATC	1 cut(s)	1314
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	2 cut(s)	272, 978
BseNI	ACTGG	3 cut(s)	98, 739, 1285
BseRI	GAGGAG	4 cut(s)	192, 207, 219, 264
BseSI	GKGCMC	1 cut(s)	1138
BsgI	GTGCAG	1 cut(s)	1107
BshFI	GGCC	2 cut(s)	398, 1392
BsiHKAI	GWGCWC	2 cut(s)	534, 1138
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	6 cut(s)	68, 399, 412, 431, 917, 1174
BslFI	GGGAC	2 cut(s)	179, 1549
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	179, 1549
BsnI	GGCC	2 cut(s)	398, 1392
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	3 cut(s)	534, 1138, 1229
Bsp143I	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
Bsp19I	CCATGG	1 cut(s)	1393
BspACI	CCGC	5 cut(s)	280, 319, 351, 428, 636
BspANI	GGCC	2 cut(s)	398, 1392
BspCNI	CTCAG	2 cut(s)	271, 979
BspHI	TCATGA	1 cut(s)	1426
BspLI	GGNNCC	4 cut(s)	17, 72, 195, 1122
BspMAI	CTGCAG	3 cut(s)	785, 1468, 1543
BspPI	GGATC	3 cut(s)	163, 730, 1552
BsrDI	GCAATG	1 cut(s)	652
BsrFI	RCCGGY	2 cut(s)	398, 430
BsrI	ACTGG	3 cut(s)	98, 739, 1285
BssAI	RCCGGY	2 cut(s)	398, 430
BssECI	CCNNGG	1 cut(s)	1393
BssMI	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
BssNAI	GTATAC	1 cut(s)	901
BssT1I	CCWWGG	1 cut(s)	1393
Bst1107I	GTATAC	1 cut(s)	901
Bst4CI	ACNGT	4 cut(s)	8, 793, 1329, 1504
Bst6I	CTCTTC	2 cut(s)	225, 246
BstC8I	GCNNGC	4 cut(s)	400, 667, 948, 1390
BstDEI	CTNAG	4 cut(s)	35, 258, 655, 987
BstDSI	CCRYGG	1 cut(s)	1393
BstENI	CCTNNNNNAGG	2 cut(s)	188, 978
BstF5I	GGATG	3 cut(s)	34, 826, 1216
BstKTI	GATC	9 cut(s)	13, 171, 442, 501, 725, 1024, 1261, 1441, 1547
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
BstMWI	GCNNNNNNNGC	6 cut(s)	348, 357, 424, 697, 706, 935
BstNSI	RCATGY	3 cut(s)	524, 669, 1593
BstSCI	CCNGG	2 cut(s)	66, 916
BstSFI	CTRYAG	3 cut(s)	781, 1464, 1539
BstSLI	GKGCMC	1 cut(s)	1138
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	722
BstZ17I	GTATAC	1 cut(s)	901
BsuI	GTATCC	2 cut(s)	565, 1102
BsuRI	GGCC	2 cut(s)	398, 1392
BtgI	CCRYGG	1 cut(s)	1393
BtgZI	GCGATG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	34, 826, 1216
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	3 cut(s)	13, 789, 966
Cac8I	GCNNGC	4 cut(s)	400, 667, 948, 1390
CciI	TCATGA	1 cut(s)	1426
Cfr10I	RCCGGY	2 cut(s)	398, 430
Cfr13I	GGNCC	4 cut(s)	16, 70, 193, 914
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	338, 728, 802
CviAII	CATG	9 cut(s)	134, 370, 521, 639, 666, 1007, 1394, 1427, 1590
CviQI	GTAC	3 cut(s)	338, 728, 802
DdeI	CTNAG	4 cut(s)	35, 258, 655, 987
DpnI	GATC	9 cut(s)	12, 170, 441, 500, 724, 1023, 1260, 1440, 1546
DpnII	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
DraI	TTTAAA	1 cut(s)	1324
DraIII	CACNNNGTG	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	225, 246
EarI	CTCTTC	2 cut(s)	225, 246
EciI	GGCGGA	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	1393
Eco24I	GRGCYC	2 cut(s)	534, 1229
Eco47I	GGWCC	4 cut(s)	16, 70, 193, 914
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	340, 945
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	532
EcoNI	CCTNNNNNAGG	2 cut(s)	188, 978
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	1393
EcoT38I	GRGCYC	2 cut(s)	534, 1229
ErhI	CCWWGG	1 cut(s)	1393
FaeI	CATG	9 cut(s)	137, 373, 524, 642, 669, 1010, 1397, 1430, 1593
FalI	AAGNNNNNCTT	2 cut(s)	1336, 1368
FaqI	GGGAC	2 cut(s)	179, 1549
FatI	CATG	9 cut(s)	133, 369, 520, 638, 665, 1006, 1393, 1426, 1589
FauNDI	CATATG	1 cut(s)	877
FbaI	TGATCA	1 cut(s)	1438
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	2 cut(s)	352, 428
FokI	GGATG	3 cut(s)	41, 833, 1223
FriOI	GRGCYC	2 cut(s)	534, 1229
Fsp4HI	GCNGC	2 cut(s)	352, 428
FspBI	CTAG	1 cut(s)	1305
GluI	GCNGC	2 cut(s)	352, 428
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	398, 1392
HapII	CCGG	6 cut(s)	68, 399, 412, 431, 917, 1174
HgaI	GACGC	1 cut(s)	424
Hin1II	CATG	9 cut(s)	137, 373, 524, 642, 669, 1010, 1397, 1430, 1593
HinfI	GANTC	6 cut(s)	387, 833, 907, 932, 1010, 1310
HpaII	CCGG	6 cut(s)	68, 399, 412, 431, 917, 1174
HphI	GGTGA	5 cut(s)	203, 269, 434, 518, 1163
Hpy166II	GTNNAC	3 cut(s)	652, 901, 1136
Hpy188I	TCNGA	7 cut(s)	28, 168, 492, 623, 925, 988, 1443
Hpy188III	TCNNGA	9 cut(s)	58, 391, 437, 460, 859, 1073, 1265, 1336, 1427
Hpy8I	GTNNAC	3 cut(s)	652, 901, 1136
Hpy99I	CGWCG	1 cut(s)	894
HpyAV	CCTTC	3 cut(s)	1171, 1444, 1470
HpyCH4III	ACNGT	4 cut(s)	8, 793, 1329, 1504
HpyCH4IV	ACGT	1 cut(s)	800
HpyF10VI	GCNNNNNNNGC	6 cut(s)	348, 357, 424, 697, 706, 935
HpyF3I	CTNAG	4 cut(s)	35, 258, 655, 987
HpySE526I	ACGT	1 cut(s)	800
Hsp92II	CATG	9 cut(s)	137, 373, 524, 642, 669, 1010, 1397, 1430, 1593
KroI	GCCGGC	1 cut(s)	398
KroNI	GCCGGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	1438
Kzo9I	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
LmnI	GCTCC	7 cut(s)	100, 493, 517, 976, 1075, 1126, 1560
LweI	GCATC	5 cut(s)	19, 1201, 1209, 1339, 1375
MaeI	CTAG	1 cut(s)	1305
MaeII	ACGT	1 cut(s)	800
MalI	GATC	9 cut(s)	12, 170, 441, 500, 724, 1023, 1260, 1440, 1546
MboI	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
MflI	RGATCY	1 cut(s)	722
MhlI	GDGCHC	3 cut(s)	534, 1138, 1229
MluCI	AATT	6 cut(s)	113, 266, 1077, 1273, 1285, 1377
MlyI	GAGTC	1 cut(s)	901
MmeI	TCCRAC	1 cut(s)	1188
MroNI	GCCGGC	1 cut(s)	398
MseI	TTAA	4 cut(s)	144, 771, 1323, 1446
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	6 cut(s)	68, 399, 412, 431, 917, 1174
MspR9I	CCNGG	2 cut(s)	68, 918
MssI	GTTTAAAC	1 cut(s)	1324
MwoI	GCNNNNNNNGC	6 cut(s)	348, 357, 424, 697, 706, 935
NaeI	GCCGGC	1 cut(s)	400
NciI	CCSGG	2 cut(s)	68, 918
NcoI	CCATGG	1 cut(s)	1393
NdeI	CATATG	1 cut(s)	877
NdeII	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
NgoMIV	GCCGGC	1 cut(s)	398
NlaIII	CATG	9 cut(s)	137, 373, 524, 642, 669, 1010, 1397, 1430, 1593
NlaIV	GGNNCC	4 cut(s)	17, 72, 195, 1122
NmeAIII	GCCGAG	1 cut(s)	295
NspI	RCATGY	3 cut(s)	524, 669, 1593
PaeI	GCATGC	1 cut(s)	669
PagI	TCATGA	1 cut(s)	1426
PdiI	GCCGGC	1 cut(s)	400
PfeI	GAWTC	5 cut(s)	387, 833, 932, 1010, 1310
PflMI	CCANNNNNTGG	3 cut(s)	370, 451, 795
PkrI	GCNGC	2 cut(s)	353, 429
PleI	GAGTC	1 cut(s)	901
PmeI	GTTTAAAC	1 cut(s)	1324
PpsI	GAGTC	1 cut(s)	901
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	17, 72, 195, 1122
PspPI	GGNCC	4 cut(s)	16, 70, 193, 914
PspPPI	RGGWCCY	1 cut(s)	193
PstI	CTGCAG	3 cut(s)	785, 1468, 1543
PsuI	RGATCY	1 cut(s)	722
RsaI	GTAC	3 cut(s)	339, 729, 803
RsaNI	GTAC	3 cut(s)	338, 728, 802
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	4 cut(s)	144, 771, 1323, 1446
SatI	GCNGC	2 cut(s)	352, 428
Sau3AI	GATC	9 cut(s)	10, 168, 439, 498, 722, 1021, 1258, 1438, 1544
Sau96I	GGNCC	4 cut(s)	16, 70, 193, 914
SchI	GAGTC	1 cut(s)	901
ScrFI	CCNGG	2 cut(s)	68, 918
SduI	GDGCHC	3 cut(s)	534, 1138, 1229
SfaNI	GCATC	5 cut(s)	19, 1201, 1209, 1339, 1375
SfcI	CTRYAG	3 cut(s)	781, 1464, 1539
SinI	GGWCC	4 cut(s)	16, 70, 193, 914
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	669
Sse9I	AATT	6 cut(s)	113, 266, 1077, 1273, 1285, 1377
SsiI	CCGC	5 cut(s)	280, 319, 351, 428, 636
SspI	AATATT	1 cut(s)	1423
SspMI	CTAG	1 cut(s)	1305
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	66, 916
StyI	CCWWGG	1 cut(s)	1393
TaaI	ACNGT	4 cut(s)	8, 793, 1329, 1504
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	3 cut(s)	438, 607, 1144
TasI	AATT	6 cut(s)	113, 266, 1077, 1273, 1285, 1377
TatI	WGTACW	1 cut(s)	727
TauI	GCSGC	2 cut(s)	354, 430
TfiI	GAWTC	5 cut(s)	387, 833, 932, 1010, 1310
Tru1I	TTAA	4 cut(s)	144, 771, 1323, 1446
Tru9I	TTAA	4 cut(s)	144, 771, 1323, 1446
TscAI	CASTG	3 cut(s)	13, 796, 973
TspDTI	ATGAA	8 cut(s)	17, 150, 789, 864, 864, 1023, 1229, 1415
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	13, 796, 973
Van91I	CCANNNNNTGG	3 cut(s)	370, 451, 795
VneI	GTGCAC	1 cut(s)	1134
VpaK11BI	GGWCC	4 cut(s)	16, 70, 193, 914
XagI	CCTNNNNNAGG	2 cut(s)	188, 978
XceI	RCATGY	3 cut(s)	524, 669, 1593
XmiI	GTMKAC	1 cut(s)	900
XspI	CTAG	1 cut(s)	1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.