Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015400

Physical Location & Seq

Genomic Coordinates Reverse (-)

5881767 .. 5882177

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGCCAGATCCAATTCGGCCTCCCAGAAGGTGAAGAACCAACTTCCAATTTGGTAGGTATTAGTTGCAGAAAGGCGGCTATGAATCTCTTCACCAGAAACAGACCCACAACAAGACCATGGCCTCTCAGAAAACACTACCCCCTCCTCTACCTGACACTCCTCTTCCCCCGCCTCTTCCTCTCCTACTTCTTCTCTCTCACTTCCGATTCCCTCTTCCTCAAGACCTCACTTTCTACTTCCCCAAAATGCCCCTCCCTCGGAGGAGAGAAGTTCCTCTGGTACGCTCCCCACAGTGGCTTCAGCAACCAGCTTTCCGAGTTTAAGAACGCCCTTCTCATGGCCGCCATTCTGAACCGGACCTTGCTCGTCCCTCCGGTTCTCGATCGACCACGCCGTTGCTCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

137

Amino Acids

15.54

Weight (kDa)

10.04

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17430
fragaria_vesca	FvH4_5g19490
malus_domestica	MD04G1060600.v1.1
prunus_persica	Prupe.5G065000_v2.0.a1
pyrus_communis	pycom04g05440 pycom06g04540
rosa_chinensis	RchiOBHm_Chr7g0204071
rosa_laevigata	RLG00000003490
rosa_multiflora	Rmu_co8337455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253380
rosa_rugosa	Rorug07G0080400
rosa_samantha	Rh7AG210400 Rh7BG209000 Rh7CG222800 Rh7DG217100
rosa_wichuraiana	Rw7G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	77, 172, 345
AclWI	GGATC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	286
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	3 cut(s)	260, 296, 340
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
AlwI	GGATC	1 cut(s)	4
AoxI	GGCC	3 cut(s)	19, 122, 342
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	44, 85
AvaII	GGWCC	1 cut(s)	360
BceAI	ACGGC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	78, 345
BlsI	GCNGC	2 cut(s)	79, 346
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	119, 259
BsaWI	WCCGGW	2 cut(s)	357, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 296, 340
BseDI	CCNNGG	2 cut(s)	119, 259
BseLI	CCNNNNNNNGG	3 cut(s)	260, 296, 340
BseMII	CTCAG	1 cut(s)	142
BseRI	GAGGAG	3 cut(s)	137, 152, 279
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	21, 124, 344
BsiEI	CGRYCG	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	358, 377
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	3 cut(s)	260, 296, 340
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	21, 124, 344
Bsp143I	GATC	2 cut(s)	9, 385
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	3 cut(s)	77, 172, 345
BspANI	GGCC	3 cut(s)	21, 124, 344
BspCNI	CTCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	119, 259
BssMI	GATC	2 cut(s)	9, 385
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	4 cut(s)	95, 170, 182, 221
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	12, 388
BstMBI	GATC	2 cut(s)	9, 385
BstMCI	CGRYCG	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	3 cut(s)	21, 124, 344
BtgI	CCRYGG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	2 cut(s)	120, 340
CviJI	RGCY	6 cut(s)	21, 80, 124, 300, 313, 344
CviKI_1	RGCY	6 cut(s)	21, 80, 124, 300, 313, 344
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	11, 387
DpnII	GATC	2 cut(s)	9, 385
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	4 cut(s)	95, 170, 182, 221
EarI	CTCTTC	4 cut(s)	95, 170, 182, 221
Eco130I	CCWWGG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	2 cut(s)	123, 343
FaiI	YATR	3 cut(s)	83, 121, 341
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	2 cut(s)	119, 339
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	78, 345
Fsp4HI	GCNGC	2 cut(s)	78, 345
GluI	GCNGC	2 cut(s)	78, 345
HaeIII	GGCC	3 cut(s)	21, 124, 344
HapII	CCGG	2 cut(s)	358, 377
Hin1II	CATG	2 cut(s)	123, 343
HinfI	GANTC	2 cut(s)	85, 209
HpaII	CCGG	2 cut(s)	358, 377
HphI	GGTGA	2 cut(s)	44, 85
Hpy188I	TCNGA	5 cut(s)	131, 208, 263, 319, 354
Hpy188III	TCNNGA	2 cut(s)	223, 383
HpyAV	CCTTC	2 cut(s)	23, 344
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	123, 343
Kzo9I	GATC	2 cut(s)	9, 385
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	20, 39, 109, 167, 265, 323, 371, 390
MalI	GATC	2 cut(s)	11, 387
MboI	GATC	2 cut(s)	9, 385
MboII	GAAGA	6 cut(s)	47, 82, 157, 169, 184, 208
MflI	RGATCY	1 cut(s)	9
MluCI	AATT	2 cut(s)	14, 49
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	358, 377
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	9, 385
NlaIII	CATG	2 cut(s)	123, 343
PcsI	WCGNNNNNNNCGW	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	85, 209
PkrI	GCNGC	2 cut(s)	79, 346
Ple19I	CGATCG	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	9
PvuI	CGATCG	1 cut(s)	388
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	78, 345
Sau3AI	GATC	2 cut(s)	9, 385
Sau96I	GGNCC	1 cut(s)	360
SetI	ASST	6 cut(s)	34, 61, 156, 230, 315, 365
SinI	GGWCC	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	14, 49
SsiI	CCGC	3 cut(s)	77, 172, 345
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	384, 388
TasI	AATT	2 cut(s)	14, 49
TauI	GCSGC	2 cut(s)	80, 347
TfiI	GAWTC	2 cut(s)	85, 209
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.