Rmu_co8337455.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8337455.1
OG0015400
Physical Location & Seq
Reverse (-)
2 .. 867
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8337455.1_g000001.1.cds

Sequence Viewer

Length: 866 bp
atggctgacgttgttgatatatcgtcattagtttcttcttcgttagttcgagttatagatttcagggtttttatatcctcatggtgcaatgtgaacttagattttgcttgccataatgagttcaatgcacagccttatttgctggataaattaaaggaatgtggatctgtactaagtggtgtcaaaggtaatgttaagtgtttatatgctgttaatgaagactgcagaaccactgtttggacataccagaatggtaatgaggatggggcattagattcttttcaacctgatgaaaaactcaagaaaaagaagatttcatatgttaggaaacgacgagatgtatacaagactctcggactgggttctgaagctgaatcagcttctgtgctggcatttggaagccttttcactgctccttacaaaggttctgagctacttattgatatccatgaatctccaagagatcaaaggataggaagtctaatggagaagattgagtttcttccatttgctcctgaaattgtgagtgcaggaaagaagtttgctttagataccataaaggctccttttctatgtgcacagcttcgattattagacgggcagttcaagaatcaccggaaggctacttttcaagggctaaaacaaaagttggatgctttgatgcagagccctctccccattcatatctttgtgatgactgatcttcctgaaagtaattggactgaaaattacttgggggatttggctagagattcaaatcagtttaaactgtttttcctgaaagaaagagatgatttggtaatacaaacagctacaagaattgttgatgcaggccatggcttgaagtttgggtctgttgcaaatat

Protein Analysis

288

Amino Acids

32.31

Weight (kDa)

6.95

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17430
fragaria_vesca FvH4_5g19490
malus_domestica MD04G1060600.v1.1
prunus_persica Prupe.5G065000_v2.0.a1
pyrus_communis pycom04g05440 pycom06g04540
rosa_chinensis RchiOBHm_Chr7g0204071
rosa_laevigata RLG00000003490
rosa_multiflora Rmu_co8337455.1_g000001
rosa_roxburghii Rroxscaffold_3G00253380
rosa_rugosa Rorug07G0080400
rosa_samantha Rh7AG210400 Rh7BG209000 Rh7CG222800 Rh7DG217100
rosa_wichuraiana Rw7G018320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 237
AccI GTMKAC 1 cut(s) 342
AclWI GGATC 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 237, 422
AgsI TTSAA 6 cut(s) 124, 284, 607, 632, 756, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AluBI AGCT 5 cut(s) 371, 380, 433, 583, 812
AluI AGCT 5 cut(s) 371, 380, 433, 583, 812
Alw21I GWGCWC 1 cut(s) 580
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 1 cut(s) 832
ApaLI GTGCAC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 580
BccI CCATC 1 cut(s) 257
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 564
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 3 cut(s) 643, 651, 817
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 1 cut(s) 835
BsaWI WCCGGW 1 cut(s) 615
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 422
Bse1I ACTGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 835
BseGI GGATG 2 cut(s) 268, 658
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 2 cut(s) 237, 422
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 580
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 1 cut(s) 834
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 1 cut(s) 616
BslI CCNNNNNNNGG 2 cut(s) 237, 422
BsnI GGCC 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 580, 671
Bsp143I GATC 3 cut(s) 164, 463, 700
Bsp19I CCATGG 1 cut(s) 835
BspANI GGCC 1 cut(s) 834
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 835
BssMI GATC 3 cut(s) 164, 463, 700
BssNAI GTATAC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 835
Bst1107I GTATAC 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 235, 771
BstC8I GCNNGC 3 cut(s) 109, 390, 832
BstDEI CTNAG 3 cut(s) 97, 173, 429
BstDSI CCRYGG 1 cut(s) 835
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 268, 658
BstKTI GATC 3 cut(s) 167, 466, 703
BstMBI GATC 3 cut(s) 164, 463, 700
BstMWI GCNNNNNNNGC 2 cut(s) 139, 377
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 580
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BstZ17I GTATAC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 834
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 2 cut(s) 268, 658
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 231, 408
Cac8I GCNNGC 3 cut(s) 109, 390, 832
CaiI CAGNNNCTG 1 cut(s) 383
Csp6I GTAC 1 cut(s) 170
CviAII CATG 3 cut(s) 81, 449, 836
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 3 cut(s) 97, 173, 429
DpnI GATC 3 cut(s) 166, 465, 702
DpnII GATC 3 cut(s) 164, 463, 700
DraI TTTAAA 1 cut(s) 766
Eco130I CCWWGG 1 cut(s) 835
Eco24I GRGCYC 1 cut(s) 671
Eco32I GATATC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 387
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 671
ErhI CCWWGG 1 cut(s) 835
FaeI CATG 3 cut(s) 84, 452, 839
FatI CATG 3 cut(s) 80, 448, 835
FauNDI CATATG 1 cut(s) 319
FblI GTMKAC 1 cut(s) 342
FokI GGATG 2 cut(s) 275, 665
FriOI GRGCYC 1 cut(s) 671
FspBI CTAG 1 cut(s) 747
HaeIII GGCC 1 cut(s) 834
HapII CCGG 1 cut(s) 616
Hin1II CATG 3 cut(s) 84, 452, 839
HinfI GANTC 6 cut(s) 275, 349, 374, 452, 610, 752
HpaII CCGG 1 cut(s) 616
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 3 cut(s) 94, 343, 578
Hpy188I TCNGA 3 cut(s) 356, 367, 430
Hpy188III TCNNGA 5 cut(s) 301, 515, 607, 707, 778
Hpy8I GTNNAC 3 cut(s) 94, 343, 578
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 613
HpyCH4III ACNGT 2 cut(s) 235, 771
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 8 cut(s) 87, 128, 225, 530, 578, 664, 830, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 377
HpyF3I CTNAG 3 cut(s) 97, 173, 429
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 3 cut(s) 84, 452, 839
Kzo9I GATC 3 cut(s) 164, 463, 700
LmnI GCTCC 3 cut(s) 418, 517, 568
LweI GCATC 3 cut(s) 643, 651, 817
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 9
MalI GATC 3 cut(s) 166, 465, 702
MboI GATC 3 cut(s) 164, 463, 700
MboII GAAGA 7 cut(s) 27, 30, 230, 322, 494, 502, 695
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 580, 671
MluCI AATT 5 cut(s) 149, 519, 715, 727, 819
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 3 cut(s) 88, 253, 681
MseI TTAA 4 cut(s) 152, 195, 213, 765
MspI CCGG 1 cut(s) 616
MssI GTTTAAAC 1 cut(s) 766
MwoI GCNNNNNNNGC 2 cut(s) 139, 377
NcoI CCATGG 1 cut(s) 835
NdeI CATATG 1 cut(s) 319
NdeII GATC 3 cut(s) 164, 463, 700
NlaIII CATG 3 cut(s) 84, 452, 839
NlaIV GGNNCC 1 cut(s) 564
PfeI GAWTC 5 cut(s) 275, 374, 452, 610, 752
PflMI CCANNNNNTGG 1 cut(s) 237
PleI GAGTC 1 cut(s) 343
PmeI GTTTAAAC 1 cut(s) 766
PpsI GAGTC 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 564
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 4 cut(s) 152, 195, 213, 765
Sau3AI GATC 3 cut(s) 164, 463, 700
SchI GAGTC 1 cut(s) 343
SduI GDGCHC 2 cut(s) 580, 671
SetI ASST 9 cut(s) 12, 190, 289, 373, 382, 427, 435, 585, 814
SfaNI GCATC 3 cut(s) 643, 651, 817
SfcI CTRYAG 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 5 cut(s) 149, 519, 715, 727, 819
SspMI CTAG 1 cut(s) 747
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 2 cut(s) 235, 771
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 49, 586
TasI AATT 5 cut(s) 149, 519, 715, 727, 819
TatI WGTACW 1 cut(s) 169
TfiI GAWTC 5 cut(s) 275, 374, 452, 610, 752
Tru1I TTAA 4 cut(s) 152, 195, 213, 765
Tru9I TTAA 4 cut(s) 152, 195, 213, 765
TscAI CASTG 2 cut(s) 238, 415
TspDTI ATGAA 5 cut(s) 231, 306, 306, 465, 671
TspRI CASTG 2 cut(s) 238, 415
Van91I CCANNNNNTGG 1 cut(s) 237
VneI GTGCAC 1 cut(s) 576
XagI CCTNNNNNAGG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.