Rh7AG210400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015400
Physical Location & Seq
Reverse (-)
19326596 .. 19328527
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG210400.1

Sequence Viewer

Length: 1464 bp
ATGAACCTCTTAACCTCAAAACCCACCACCCTCCGATCGAAAAGGCAACCCTCCCAAAGGTCCCCACTCCTCTACATCACCCTCCTCTTCTCCCTCCTCGTCTTCCTCTTCTACTTCTTCTCCCTCAGCCCCAATTCCCTCCTCACCGCCCAACTTTCCCATTCCCCAAAATGCCCTTCTCTGGGTGGAGACAAGTTCCTCTGGTACGCCCCCCACAGTGGCTTCGGCAACCAGCTCATGGAGTTGAAGAACGGAATCTTGATGGCCGGCATTTTGAACCGGACGCTGGTTGTGCCGCCGGTTCTCGATCACCACGCTGTGGCTCTCGGGAGTTGCCCCAAGTTTCGGGTTTCGGCTCCGAATGAGATCAGGGGTCAGGTCTGGGAGCATGTGATTGAGCTCATTGGGAGTGGGAGGTATGTATCCATGGCTGACATTGTTGATATATCGTCATTAGTTTCTTCTTCGTTAGTTCGAGTTATAGATTTCAGGGTTTTTATATCCTCATGGTGCAATGTGAACTTAGATTTTGCTTGCCATAATGAGTTCAATGCACATTTGCTGGATAAATTAAAGGAATGTGGATCTGTACTAAGTGGTGTCAAAGGTAACGTTAAGTGTTTATATGCTGTTAATGAAGACTGCAGAACCACTGTTTGGACATACCAGAATGGTAATGAGGATGTGGCATTAGATTCTTTTCAACCTGATGAAAAACTCAAGAAAAAGAAGATTTCATATGTTAGGAAACGACGAGATGTATACAAGACTCTCGGACCGGGTTCTGAAGCTGAATCAGCTTCTGTGCTGGCATTTGGAAGCCTTTTCACAGCTCCTTACAAAGGTTCTGAGCTACTTATTGATATCCATGAATCTCCAAGAGATCAAAGGATAGGAAGTCTAATGGAGAAGATTGAGTTTCTTCCATTTGCTCCTGAAATTGTGAGTGCAGGAAAGAAGTTTGCTTTGGATACCATAAAGGCTCCTTTTCTATGTGCACAGCTTCGATTATTAGACGGGCAGTTCAAGAATCACCGGAAGGCTACTTTTCAAGGGCTAAAACAAAAGTTGGATGCTTTGATGCAGAGCCCTCTCCCCATTCATATCTTTGTGATGACTGATCTTCCTGAAAGTAATTGGACTGAAAATTACTTGGGGGATTTGGCTAGAGATTCAAATCAGTTTAAACTGTTTTTCCTGAAAGAAAGAGATGATTTGGTAATACAAACAGCTACAAGAATTGTTGATGCAGGCCATGGCTTGAAGTTTGGGTCTGTTGCAAATATTCATGATGGAACTGATCAGATTAAGAAGGACTGCCCTTCTGCAGTAATACCCGATGTTCTTCTATACATAGAGCAAACTGTTTGCAGTTGTGCGTCTCTTGGATTTGTTGGGACTGCAGGATCAACTATTGCAGGGAGCATAGAGCTAATGAGAAAGTTCGGCGCATGTTCAAGCTAA

Protein Analysis

487

Amino Acids

53.96

Weight (kDa)

8.48

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17430
fragaria_vesca FvH4_5g19490
malus_domestica MD04G1060600.v1.1
prunus_persica Prupe.5G065000_v2.0.a1
pyrus_communis pycom04g05440 pycom06g04540
rosa_chinensis RchiOBHm_Chr7g0204071
rosa_laevigata RLG00000003490
rosa_multiflora Rmu_co8337455.1_g000001
rosa_roxburghii Rroxscaffold_3G00253380
rosa_rugosa Rorug07G0080400
rosa_samantha Rh7AG210400 Rh7BG209000 Rh7CG222800 Rh7DG217100
rosa_wichuraiana Rw7G018320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 238, 319, 657
AccI GTMKAC 1 cut(s) 762
AciI CCGC 2 cut(s) 147, 296
AclI AACGTT 1 cut(s) 612
AclWI GGATC 2 cut(s) 592, 1414
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 807
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 2 cut(s) 206, 591
AgsI TTSAA 9 cut(s) 247, 277, 550, 704, 1027, 1052, 1176, 1264, 1458
AjuI GAANNNNNNNTTGG 6 cut(s) 160, 192, 640, 672, 950, 982
Alw21I GWGCWC 2 cut(s) 402, 1000
Alw26I GTCTC 2 cut(s) 183, 1386
Alw44I GTGCAC 1 cut(s) 996
AlwI GGATC 2 cut(s) 592, 1414
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 2 cut(s) 264, 1252
ApaLI GTGCAC 1 cut(s) 996
AspLEI GCGC 1 cut(s) 1451
AspS9I GGNCC 2 cut(s) 60, 776
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 4 cut(s) 70, 136, 302, 1025
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 60, 776
BaeGI GKGCMC 1 cut(s) 1000
BanII GRGCYC 2 cut(s) 402, 1091
BbsI GAAGAC 2 cut(s) 94, 645
Bbv12I GWGCWC 2 cut(s) 402, 1000
BbvCI CCTCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 256, 1286
BciVI GTATCC 2 cut(s) 433, 964
BclI TGATCA 1 cut(s) 1300
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 183, 1386
BfaI CTAG 1 cut(s) 1167
BfmI CTRYAG 3 cut(s) 643, 1326, 1401
BfuI GTATCC 2 cut(s) 433, 964
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 2 cut(s) 60, 776
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 60, 776
BmiI GGNNCC 3 cut(s) 62, 357, 984
BmrFI CCNGG 1 cut(s) 780
BmsI GCATC 3 cut(s) 1063, 1071, 1237
BpiI GAAGAC 2 cut(s) 94, 645
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 1 cut(s) 780
BsaBI GATNNNNATC 1 cut(s) 1176
BsaJI CCNNGG 2 cut(s) 426, 1255
BsaWI WCCGGW 2 cut(s) 279, 1035
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse118I RCCGGY 2 cut(s) 266, 298
Bse3DI GCAATG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 1176
BseDI CCNNGG 2 cut(s) 426, 1255
BseGI GGATG 2 cut(s) 688, 1078
BseJI GATNNNNATC 1 cut(s) 1176
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 139, 840
BseRI GAGGAG 4 cut(s) 59, 74, 86, 131
BseSI GKGCMC 1 cut(s) 1000
BsgI GTGCAG 1 cut(s) 969
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 266, 1254
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 402, 1000
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 5 cut(s) 267, 280, 299, 779, 1036
BslFI GGGAC 2 cut(s) 46, 1411
BsmAI GTCTC 2 cut(s) 183, 1386
BsmBI CGTCTC 1 cut(s) 1386
BsmFI GGGAC 2 cut(s) 46, 1411
BsnI GGCC 2 cut(s) 266, 1254
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 402, 1000, 1091
Bsp143I GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
Bsp19I CCATGG 2 cut(s) 426, 1255
BspACI CCGC 2 cut(s) 147, 296
BspANI GGCC 2 cut(s) 266, 1254
BspCNI CTCAG 2 cut(s) 138, 841
BspHI TCATGA 1 cut(s) 1288
BspLI GGNNCC 3 cut(s) 62, 357, 984
BspMAI CTGCAG 3 cut(s) 647, 1330, 1405
BspPI GGATC 2 cut(s) 592, 1414
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 2 cut(s) 266, 298
BssAI RCCGGY 2 cut(s) 266, 298
BssECI CCNNGG 2 cut(s) 426, 1255
BssMI GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
BssNAI GTATAC 1 cut(s) 763
BssT1I CCWWGG 2 cut(s) 426, 1255
Bst1107I GTATAC 1 cut(s) 763
Bst4CI ACNGT 4 cut(s) 218, 655, 1191, 1366
Bst6I CTCTTC 2 cut(s) 92, 113
BstC8I GCNNGC 4 cut(s) 268, 535, 810, 1252
BstDEI CTNAG 4 cut(s) 125, 523, 593, 849
BstDSI CCRYGG 2 cut(s) 426, 1255
BstENI CCTNNNNNAGG 2 cut(s) 55, 840
BstF5I GGATG 2 cut(s) 688, 1078
BstHHI GCGC 1 cut(s) 1451
BstKTI GATC 8 cut(s) 38, 310, 369, 587, 886, 1123, 1303, 1409
BstMAI GTCTC 2 cut(s) 183, 1386
BstMBI GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 292, 797
BstNSI RCATGY 2 cut(s) 392, 1455
BstSCI CCNGG 1 cut(s) 778
BstSFI CTRYAG 3 cut(s) 643, 1326, 1401
BstSLI GKGCMC 1 cut(s) 1000
BstV2I GAAGAC 2 cut(s) 94, 645
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BstZ17I GTATAC 1 cut(s) 763
BsuI GTATCC 2 cut(s) 433, 964
BsuRI GGCC 2 cut(s) 266, 1254
BtgI CCRYGG 2 cut(s) 426, 1255
BtsCI GGATG 2 cut(s) 688, 1078
BtsIMutI CAGTG 2 cut(s) 223, 651
Cac8I GCNNGC 4 cut(s) 268, 535, 810, 1252
CaiI CAGNNNCTG 1 cut(s) 803
CciI TCATGA 1 cut(s) 1288
CfoI GCGC 1 cut(s) 1451
Cfr10I RCCGGY 2 cut(s) 266, 298
Cfr13I GGNCC 2 cut(s) 60, 776
CpoI CGGWCCG 1 cut(s) 776
CseI GACGC 2 cut(s) 292, 1368
Csp6I GTAC 2 cut(s) 205, 590
CspI CGGWCCG 1 cut(s) 776
CviAII CATG 8 cut(s) 238, 389, 427, 507, 869, 1256, 1289, 1452
CviQI GTAC 2 cut(s) 205, 590
DdeI CTNAG 4 cut(s) 125, 523, 593, 849
DpnI GATC 8 cut(s) 37, 309, 368, 586, 885, 1122, 1302, 1408
DpnII GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
DraI TTTAAA 1 cut(s) 1186
DraIII CACNNNGTG 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 92, 113
EarI CTCTTC 2 cut(s) 92, 113
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 2 cut(s) 426, 1255
Eco24I GRGCYC 2 cut(s) 402, 1091
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 2 cut(s) 60, 776
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 400
EcoNI CCTNNNNNAGG 2 cut(s) 55, 840
EcoO109I RGGNCCY 1 cut(s) 60
EcoRV GATATC 1 cut(s) 865
EcoT14I CCWWGG 2 cut(s) 426, 1255
EcoT38I GRGCYC 2 cut(s) 402, 1091
ErhI CCWWGG 2 cut(s) 426, 1255
Esp3I CGTCTC 1 cut(s) 1386
FaeI CATG 8 cut(s) 241, 392, 430, 510, 872, 1259, 1292, 1455
FaqI GGGAC 2 cut(s) 46, 1411
FatI CATG 8 cut(s) 237, 388, 426, 506, 868, 1255, 1288, 1451
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 1 cut(s) 1300
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 695, 1085
FriOI GRGCYC 2 cut(s) 402, 1091
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 1167
GlaI GCGC 1 cut(s) 1450
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 2 cut(s) 266, 1254
HapII CCGG 5 cut(s) 267, 280, 299, 779, 1036
HgaI GACGC 2 cut(s) 292, 1368
HhaI GCGC 1 cut(s) 1451
Hin1II CATG 8 cut(s) 241, 392, 430, 510, 872, 1259, 1292, 1455
Hin6I GCGC 1 cut(s) 1449
HinP1I GCGC 1 cut(s) 1449
HinfI GANTC 7 cut(s) 255, 695, 769, 794, 872, 1030, 1172
HpaII CCGG 5 cut(s) 267, 280, 299, 779, 1036
HphI GGTGA 4 cut(s) 70, 136, 302, 1025
Hpy166II GTNNAC 3 cut(s) 520, 763, 998
Hpy188I TCNGA 6 cut(s) 35, 360, 776, 787, 850, 1305
Hpy188III TCNNGA 9 cut(s) 259, 305, 328, 721, 935, 1027, 1127, 1198, 1289
Hpy8I GTNNAC 3 cut(s) 520, 763, 998
Hpy99I CGWCG 1 cut(s) 756
HpyAV CCTTC 4 cut(s) 186, 1033, 1306, 1332
HpyCH4III ACNGT 4 cut(s) 218, 655, 1191, 1366
HpyCH4IV ACGT 1 cut(s) 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 797
HpyF3I CTNAG 4 cut(s) 125, 523, 593, 849
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 8 cut(s) 241, 392, 430, 510, 872, 1259, 1292, 1455
HspAI GCGC 1 cut(s) 1449
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 1300
Kzo9I GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
LmnI GCTCC 6 cut(s) 361, 385, 838, 937, 988, 1422
LweI GCATC 3 cut(s) 1063, 1071, 1237
MaeI CTAG 1 cut(s) 1167
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 608
MalI GATC 8 cut(s) 37, 309, 368, 586, 885, 1122, 1302, 1408
MboI GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 3 cut(s) 402, 1000, 1091
MluCI AATT 6 cut(s) 133, 569, 939, 1135, 1147, 1239
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 1050
MroNI GCCGGC 1 cut(s) 266
MseI TTAA 6 cut(s) 11, 572, 615, 633, 1185, 1308
MspI CCGG 5 cut(s) 267, 280, 299, 779, 1036
MspR9I CCNGG 1 cut(s) 780
MssI GTTTAAAC 1 cut(s) 1186
MwoI GCNNNNNNNGC 2 cut(s) 292, 797
NaeI GCCGGC 1 cut(s) 268
NciI CCSGG 1 cut(s) 780
NcoI CCATGG 2 cut(s) 426, 1255
NdeI CATATG 1 cut(s) 739
NdeII GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 8 cut(s) 241, 392, 430, 510, 872, 1259, 1292, 1455
NlaIV GGNNCC 3 cut(s) 62, 357, 984
NspI RCATGY 2 cut(s) 392, 1455
PagI TCATGA 1 cut(s) 1288
PdiI GCCGGC 1 cut(s) 268
PfeI GAWTC 6 cut(s) 255, 695, 794, 872, 1030, 1172
PflMI CCANNNNNTGG 3 cut(s) 238, 319, 657
PkrI GCNGC 1 cut(s) 297
Ple19I CGATCG 1 cut(s) 38
PleI GAGTC 1 cut(s) 763
PmeI GTTTAAAC 1 cut(s) 1186
PpsI GAGTC 1 cut(s) 763
PpuMI RGGWCCY 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 62, 357, 984
PspPI GGNCC 2 cut(s) 60, 776
PspPPI RGGWCCY 1 cut(s) 60
PstI CTGCAG 3 cut(s) 647, 1330, 1405
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 584
PvuI CGATCG 1 cut(s) 38
RsaI GTAC 2 cut(s) 206, 591
RsaNI GTAC 2 cut(s) 205, 590
Rsr2I CGGWCCG 1 cut(s) 776
RsrII CGGWCCG 1 cut(s) 776
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 6 cut(s) 11, 572, 615, 633, 1185, 1308
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 8 cut(s) 35, 307, 366, 584, 883, 1120, 1300, 1406
Sau96I GGNCC 2 cut(s) 60, 776
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 1 cut(s) 780
SduI GDGCHC 3 cut(s) 402, 1000, 1091
SfaNI GCATC 3 cut(s) 1063, 1071, 1237
SfcI CTRYAG 3 cut(s) 643, 1326, 1401
SinI GGWCC 2 cut(s) 60, 776
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 6 cut(s) 133, 569, 939, 1135, 1147, 1239
SsiI CCGC 2 cut(s) 147, 296
SspI AATATT 1 cut(s) 1285
SspMI CTAG 1 cut(s) 1167
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 2 cut(s) 426, 1255
TaaI ACNGT 4 cut(s) 218, 655, 1191, 1366
TaiI ACGT 1 cut(s) 615
TaqI TCGA 4 cut(s) 38, 306, 475, 1006
TasI AATT 6 cut(s) 133, 569, 939, 1135, 1147, 1239
TatI WGTACW 1 cut(s) 589
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 6 cut(s) 255, 695, 794, 872, 1030, 1172
Tru1I TTAA 6 cut(s) 11, 572, 615, 633, 1185, 1308
Tru9I TTAA 6 cut(s) 11, 572, 615, 633, 1185, 1308
TscAI CASTG 2 cut(s) 223, 658
TspDTI ATGAA 7 cut(s) 17, 651, 726, 726, 885, 1091, 1277
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 2 cut(s) 223, 658
Van91I CCANNNNNTGG 3 cut(s) 238, 319, 657
VneI GTGCAC 1 cut(s) 996
VpaK11BI GGWCC 2 cut(s) 60, 776
XagI CCTNNNNNAGG 2 cut(s) 55, 840
XceI RCATGY 2 cut(s) 392, 1455
XmiI GTMKAC 1 cut(s) 762
XspI CTAG 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.